Wall clock time and date at job start Tue Mar 31 2020 13:37:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46812 * 2 1 4 4 C 1.42905 * 113.99476 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46704 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.47028 * 186.85258 * 5 4 3 7 7 C 1.50702 * 109.46990 * 306.85178 * 5 4 3 8 8 O 1.20825 * 119.99606 * 120.00121 * 7 5 4 9 9 O 1.34227 * 120.00301 * 299.99863 * 7 5 4 10 10 N 1.46896 * 109.46929 * 66.85238 * 5 4 3 11 11 C 1.46898 * 111.00486 * 73.97442 * 10 5 4 12 12 C 1.46906 * 111.00080 * 310.01683 * 10 5 4 13 13 C 1.50701 * 109.46996 * 190.00155 * 12 10 5 14 14 C 1.38308 * 119.93091 * 269.72847 * 13 12 10 15 15 C 1.38098 * 120.06596 * 179.72542 * 14 13 12 16 16 C 1.38875 * 119.93029 * 0.57329 * 15 14 13 17 17 O 1.35758 * 120.06576 * 179.68139 * 16 15 14 18 18 C 1.34831 * 116.99550 * 174.50860 * 17 16 15 19 19 H 1.08003 * 120.00484 * 5.10307 * 18 17 16 20 20 C 1.38655 * 119.99602 * 185.09781 * 18 17 16 21 21 N 1.31547 * 120.00403 * 0.02562 * 20 18 17 22 22 Si 1.86810 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47000 * 59.99970 * 22 20 18 24 24 H 1.48491 * 109.47120 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46797 * 300.00172 * 22 20 18 26 26 C 1.38877 * 119.86562 * 359.69762 * 16 15 14 27 27 C 1.38097 * 119.93117 * 0.02562 * 26 16 15 28 28 H 1.08992 * 109.47595 * 299.99930 * 1 2 3 29 29 H 1.09007 * 109.47004 * 60.00405 * 1 2 3 30 30 H 1.08999 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46985 * 239.99802 * 2 1 3 32 32 H 1.08996 * 109.46814 * 120.00017 * 2 1 3 33 33 H 1.08994 * 109.47219 * 60.00363 * 4 3 2 34 34 H 1.08999 * 109.46807 * 299.99606 * 4 3 2 35 35 H 0.96695 * 117.00365 * 180.02562 * 9 7 5 36 36 H 1.08999 * 109.47024 * 63.43414 * 11 10 5 37 37 H 1.08997 * 109.47729 * 183.43608 * 11 10 5 38 38 H 1.09002 * 109.46646 * 303.43904 * 11 10 5 39 39 H 1.08997 * 109.47391 * 309.99842 * 12 10 5 40 40 H 1.08995 * 109.46874 * 70.00724 * 12 10 5 41 41 H 1.07997 * 119.96050 * 359.97438 * 14 13 12 42 42 H 1.07999 * 120.03384 * 180.27124 * 15 14 13 43 43 H 0.97000 * 120.00601 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.03797 * 179.97438 * 26 16 15 45 45 H 1.07995 * 119.96721 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 1 4.9048 3.0263 -0.1223 7 6 3.1320 3.6428 -1.1378 8 8 2.3814 4.5621 -0.9114 9 8 3.3484 3.2489 -2.4026 10 7 3.4250 3.5526 1.2728 11 6 4.3122 3.1286 2.3641 12 6 2.0224 3.2481 1.5861 13 6 1.5761 4.0853 2.7570 14 6 1.7219 3.6035 4.0453 15 6 1.3191 4.3707 5.1206 16 6 0.7562 5.6221 4.9068 17 8 0.3533 6.3759 5.9616 18 6 -0.0787 7.6244 5.6921 19 1 -0.1710 7.9547 4.6680 20 6 -0.4044 8.4842 6.7299 21 7 -0.2916 8.0822 7.9773 22 14 -1.0036 10.2138 6.3566 23 1 -2.2458 10.1432 5.5458 24 1 -1.2836 10.9261 7.6291 25 1 0.0416 10.9467 5.5981 26 6 0.6059 6.1007 3.6118 27 6 1.0159 5.3312 2.5409 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8340 0.9765 -0.8891 34 1 3.8332 0.9767 0.8909 35 1 2.8816 3.7312 -3.0986 36 1 5.3245 3.4816 2.1673 37 1 3.9574 3.5489 3.3051 38 1 4.3132 2.0405 2.4295 39 1 1.3996 3.4730 0.7204 40 1 1.9274 2.1918 1.8376 41 1 2.1550 2.6281 4.2105 42 1 1.4373 3.9958 6.1265 43 1 -0.5192 8.6838 8.7033 44 1 0.1681 7.0733 3.4423 45 1 0.8990 5.7026 1.5336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596883945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:13 Heat of formation + Delta-G solvation = -119.892136 kcal Electronic energy + Delta-G solvation = -27991.939485 eV Core-core repulsion = 23976.220227 eV Total energy + Delta-G solvation = -4015.719258 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.82 seconds Orbital eigenvalues (eV) -40.72026 -39.08595 -38.57428 -37.20477 -36.16542 -35.67473 -32.34358 -31.88627 -30.52491 -30.09386 -28.99364 -26.59866 -25.31096 -24.77291 -23.18868 -22.98491 -21.76813 -20.74357 -19.90165 -18.17388 -17.88383 -17.40096 -17.09251 -16.71147 -16.14099 -15.89716 -15.21710 -14.89176 -14.57035 -14.46772 -14.05843 -13.84447 -13.75456 -13.47510 -13.19798 -13.16799 -12.97649 -12.66075 -12.54501 -12.36307 -12.17814 -11.75024 -11.69430 -11.60865 -11.54775 -11.50236 -11.17296 -11.01642 -10.68529 -10.60673 -10.49949 -10.37334 -10.24058 -9.81506 -9.21736 -8.74787 -8.24308 -8.02192 -7.05230 -6.37230 -3.95578 2.23356 2.32299 2.41249 2.78777 3.18910 3.20113 3.22600 3.30614 3.96710 4.04309 4.51002 4.70855 4.78275 4.84217 4.86442 4.97516 5.05319 5.09656 5.18755 5.21829 5.35860 5.37229 5.43505 5.49413 5.65579 5.67803 5.71811 5.92303 5.93159 6.03675 6.05885 6.26653 6.33409 6.46053 6.58160 6.79961 6.84728 6.97022 7.04586 7.10264 7.18946 7.38436 7.56107 7.60406 7.90691 7.96609 8.08803 9.08940 9.80317 10.81075 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.002886 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.851338 B = 9699.606664 C =10148.580374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.056 3.944 3 O -0.377 6.377 4 C 0.033 3.967 5 C 0.098 3.902 6 H 0.128 0.872 7 C 0.487 3.513 8 O -0.483 6.483 9 O -0.524 6.524 10 N -0.517 5.517 11 C 0.020 3.980 12 C 0.118 3.882 13 C -0.175 4.175 14 C -0.071 4.071 15 C -0.196 4.196 16 C 0.155 3.845 17 O -0.181 6.181 18 C -0.390 4.390 19 H 0.091 0.909 20 C 0.039 3.961 21 N -0.866 5.866 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.279 1.279 25 H -0.270 1.270 26 C -0.235 4.235 27 C -0.045 4.045 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.069 0.931 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.065 0.935 34 H 0.065 0.935 35 H 0.409 0.591 36 H 0.065 0.935 37 H 0.089 0.911 38 H 0.024 0.976 39 H 0.086 0.914 40 H 0.048 0.952 41 H 0.105 0.895 42 H 0.114 0.886 43 H 0.269 0.731 44 H 0.125 0.875 45 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.373 -15.980 -18.349 25.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.020 4.020 3 O -0.296 6.296 4 C -0.046 4.046 5 C -0.012 4.012 6 H 0.146 0.854 7 C 0.327 3.673 8 O -0.367 6.367 9 O -0.336 6.336 10 N -0.241 5.241 11 C -0.128 4.128 12 C -0.007 4.007 13 C -0.177 4.177 14 C -0.090 4.090 15 C -0.215 4.215 16 C 0.101 3.899 17 O -0.084 6.084 18 C -0.466 4.466 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.501 5.501 22 Si 0.764 3.236 23 H -0.195 1.195 24 H -0.204 1.204 25 H -0.195 1.195 26 C -0.255 4.255 27 C -0.064 4.064 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.088 0.912 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.267 0.733 36 H 0.084 0.916 37 H 0.107 0.893 38 H 0.043 0.957 39 H 0.104 0.896 40 H 0.066 0.934 41 H 0.123 0.877 42 H 0.132 0.868 43 H 0.079 0.921 44 H 0.142 0.858 45 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 8.215 -15.194 -17.528 24.609 hybrid contribution -0.436 0.154 -0.603 0.760 sum 7.779 -15.040 -18.132 24.809 Atomic orbital electron populations 1.21746 0.93464 1.02194 1.03553 1.22465 0.95901 0.83730 0.99889 1.88157 1.19812 1.26510 1.95161 1.23109 0.83071 0.96556 1.01819 1.21378 1.00422 0.90130 0.89288 0.85409 1.22950 0.79783 0.81698 0.82898 1.90744 1.33735 1.27831 1.84371 1.84466 1.69148 1.62495 1.17516 1.61902 1.04722 1.57540 0.99902 1.22541 0.96671 0.97807 0.95741 1.21058 0.86438 0.96232 0.97019 1.19190 1.08214 0.97081 0.93176 1.20472 0.98858 0.97878 0.91818 1.20136 1.07884 0.94748 0.98746 1.19384 0.91434 0.91364 0.87686 1.83972 1.70343 1.25009 1.29112 1.21285 1.44353 0.86581 0.94413 0.89151 1.25261 0.97165 0.99639 0.94438 1.70026 1.45219 1.36467 0.98431 0.85804 0.79325 0.80494 0.77950 1.19534 1.20352 1.19505 1.21181 1.09659 1.02371 0.92268 1.20662 0.95106 0.92928 0.97681 0.91372 0.91920 0.91193 0.93522 0.93367 0.91710 0.91723 0.73281 0.91587 0.89256 0.95728 0.89600 0.93406 0.87710 0.86800 0.92092 0.85758 0.87248 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.26 10.28 37.16 0.38 -0.88 16 2 C 0.06 0.47 6.66 37.16 0.25 0.72 16 3 O -0.38 -4.04 6.11 -35.23 -0.22 -4.25 16 4 C 0.03 0.29 5.06 37.16 0.19 0.48 16 5 C 0.10 1.03 2.79 -68.86 -0.19 0.83 16 6 H 0.13 0.99 8.02 -51.93 -0.42 0.58 16 7 C 0.49 5.84 6.73 36.01 0.24 6.09 16 8 O -0.48 -7.73 15.49 -18.75 -0.29 -8.02 16 9 O -0.52 -4.53 13.35 -39.25 -0.52 -5.05 16 10 N -0.52 -6.95 4.37 -237.73 -1.04 -7.98 16 11 C 0.02 0.23 9.18 60.06 0.55 0.78 16 12 C 0.12 1.81 3.21 -4.97 -0.02 1.79 16 13 C -0.18 -3.23 4.90 -104.57 -0.51 -3.74 16 14 C -0.07 -1.31 7.87 -39.61 -0.31 -1.62 16 15 C -0.20 -4.27 9.99 -39.40 -0.39 -4.66 16 16 C 0.15 3.90 6.65 -39.11 -0.26 3.64 16 17 O -0.18 -5.33 9.76 0.02 0.00 -5.33 16 18 C -0.39 -11.28 9.49 30.89 0.29 -10.99 16 19 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 20 C 0.04 1.10 5.49 -17.52 -0.10 1.00 16 21 N -0.87 -26.00 13.67 55.48 0.76 -25.24 16 22 Si 0.94 21.20 29.55 -169.99 -5.02 16.17 16 23 H -0.27 -5.91 7.11 56.52 0.40 -5.51 16 24 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.27 -5.92 7.11 56.52 0.40 -5.52 16 26 C -0.24 -5.49 9.17 -39.40 -0.36 -5.85 16 27 C -0.04 -0.93 9.69 -39.61 -0.38 -1.31 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.54 8.14 -51.92 -0.42 0.12 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 33 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 34 H 0.06 0.50 6.59 -51.93 -0.34 0.16 16 35 H 0.41 2.04 9.10 45.56 0.41 2.45 16 36 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.09 1.23 5.67 -51.93 -0.29 0.93 16 38 H 0.02 0.23 6.58 -51.93 -0.34 -0.11 16 39 H 0.09 1.46 5.59 -51.93 -0.29 1.17 16 40 H 0.05 0.69 6.13 -51.93 -0.32 0.37 16 41 H 0.10 1.60 7.94 -52.49 -0.42 1.18 16 42 H 0.11 2.39 8.06 -52.49 -0.42 1.96 16 43 H 0.27 7.43 8.31 -40.82 -0.34 7.09 16 44 H 0.12 2.92 5.64 -52.49 -0.30 2.62 16 45 H 0.11 2.17 8.06 -52.49 -0.42 1.75 16 LS Contribution 368.67 15.07 5.56 5.56 Total: -1.00 -34.91 368.67 -6.91 -41.82 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.51 Total: 6.06 kcal Atomic # 6 Polarization: -13.11 SS G_CDS: -0.62 Total: -13.73 kcal Atomic # 7 Polarization: -32.95 SS G_CDS: -0.28 Total: -33.23 kcal Atomic # 8 Polarization: -21.62 SS G_CDS: -1.03 Total: -22.65 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.91 -6.91 -41.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596883945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -78.068 kcal (2) G-P(sol) polarization free energy of solvation -34.911 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -112.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.913 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.892 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.82 seconds