Wall clock time and date at job start Tue Mar 31 2020 13:37:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.42902 * 109.46812 * 2 1 4 4 C 1.42905 * 113.99476 * 179.97438 * 3 2 1 5 5 C 1.53005 * 109.46704 * 179.97438 * 4 3 2 6 6 H 1.08994 * 109.47028 * 186.85258 * 5 4 3 7 7 C 1.50702 * 109.46990 * 306.85178 * 5 4 3 8 8 O 1.20825 * 119.99606 * 120.00121 * 7 5 4 9 9 O 1.34227 * 120.00301 * 299.99863 * 7 5 4 10 10 N 1.46896 * 109.46929 * 66.85238 * 5 4 3 11 11 C 1.46898 * 111.00486 * 73.97442 * 10 5 4 12 12 C 1.46906 * 111.00080 * 310.01683 * 10 5 4 13 13 C 1.50701 * 109.46996 * 190.00155 * 12 10 5 14 14 C 1.38308 * 119.93091 * 269.72847 * 13 12 10 15 15 C 1.38098 * 120.06596 * 179.72542 * 14 13 12 16 16 C 1.38875 * 119.93029 * 0.57329 * 15 14 13 17 17 O 1.35758 * 120.06576 * 179.68139 * 16 15 14 18 18 C 1.34831 * 116.99550 * 174.50860 * 17 16 15 19 19 H 1.08003 * 120.00484 * 5.10307 * 18 17 16 20 20 C 1.38655 * 119.99602 * 185.09781 * 18 17 16 21 21 N 1.31547 * 120.00403 * 0.02562 * 20 18 17 22 22 Si 1.86810 * 119.99976 * 180.02562 * 20 18 17 23 23 H 1.48507 * 109.47000 * 59.99970 * 22 20 18 24 24 H 1.48491 * 109.47120 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.46797 * 300.00172 * 22 20 18 26 26 C 1.38877 * 119.86562 * 359.69762 * 16 15 14 27 27 C 1.38097 * 119.93117 * 0.02562 * 26 16 15 28 28 H 1.08992 * 109.47595 * 299.99930 * 1 2 3 29 29 H 1.09007 * 109.47004 * 60.00405 * 1 2 3 30 30 H 1.08999 * 109.47076 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.46985 * 239.99802 * 2 1 3 32 32 H 1.08996 * 109.46814 * 120.00017 * 2 1 3 33 33 H 1.08994 * 109.47219 * 60.00363 * 4 3 2 34 34 H 1.08999 * 109.46807 * 299.99606 * 4 3 2 35 35 H 0.96695 * 117.00365 * 180.02562 * 9 7 5 36 36 H 1.08999 * 109.47024 * 63.43414 * 11 10 5 37 37 H 1.08997 * 109.47729 * 183.43608 * 11 10 5 38 38 H 1.09002 * 109.46646 * 303.43904 * 11 10 5 39 39 H 1.08997 * 109.47391 * 309.99842 * 12 10 5 40 40 H 1.08995 * 109.46874 * 70.00724 * 12 10 5 41 41 H 1.07997 * 119.96050 * 359.97438 * 14 13 12 42 42 H 1.07999 * 120.03384 * 180.27124 * 15 14 13 43 43 H 0.97000 * 120.00601 * 179.97438 * 21 20 18 44 44 H 1.08002 * 120.03797 * 179.97438 * 26 16 15 45 45 H 1.07995 * 119.96721 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 6 3.8253 2.9384 -0.0001 6 1 4.9048 3.0263 -0.1223 7 6 3.1320 3.6428 -1.1378 8 8 2.3814 4.5621 -0.9114 9 8 3.3484 3.2489 -2.4026 10 7 3.4250 3.5526 1.2728 11 6 4.3122 3.1286 2.3641 12 6 2.0224 3.2481 1.5861 13 6 1.5761 4.0853 2.7570 14 6 1.7219 3.6035 4.0453 15 6 1.3191 4.3707 5.1206 16 6 0.7562 5.6221 4.9068 17 8 0.3533 6.3759 5.9616 18 6 -0.0787 7.6244 5.6921 19 1 -0.1710 7.9547 4.6680 20 6 -0.4044 8.4842 6.7299 21 7 -0.2916 8.0822 7.9773 22 14 -1.0036 10.2138 6.3566 23 1 -2.2458 10.1432 5.5458 24 1 -1.2836 10.9261 7.6291 25 1 0.0416 10.9467 5.5981 26 6 0.6059 6.1007 3.6118 27 6 1.0159 5.3312 2.5409 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 -0.3633 -1.0277 -0.0005 31 1 1.8933 -0.5139 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 3.8340 0.9765 -0.8891 34 1 3.8332 0.9767 0.8909 35 1 2.8816 3.7312 -3.0986 36 1 5.3245 3.4816 2.1673 37 1 3.9574 3.5489 3.3051 38 1 4.3132 2.0405 2.4295 39 1 1.3996 3.4730 0.7204 40 1 1.9274 2.1918 1.8376 41 1 2.1550 2.6281 4.2105 42 1 1.4373 3.9958 6.1265 43 1 -0.5192 8.6838 8.7033 44 1 0.1681 7.0733 3.4423 45 1 0.8990 5.7026 1.5336 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596883945.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:10 Heat of formation + Delta-G solvation = -145.305098 kcal Electronic energy + Delta-G solvation = -27993.041474 eV Core-core repulsion = 23976.220227 eV Total energy + Delta-G solvation = -4016.821247 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.63071 -40.74203 -39.56742 -38.50647 -37.34708 -36.71379 -34.33144 -32.81373 -31.85065 -31.62433 -30.07231 -28.02416 -27.00822 -25.76853 -24.27131 -23.67131 -23.50544 -22.10818 -21.02605 -19.83003 -19.01258 -18.81405 -18.19339 -17.74084 -16.95662 -16.77716 -16.46599 -16.31010 -15.98609 -15.91164 -15.46785 -15.28656 -15.09457 -14.85907 -14.44787 -14.36100 -14.09154 -13.87004 -13.68022 -13.56382 -13.40989 -12.95021 -12.82702 -12.70262 -12.65847 -12.42248 -12.35000 -12.30951 -12.23801 -12.16197 -12.00266 -11.78794 -11.33227 -11.14480 -10.77892 -10.50452 -9.74368 -9.22186 -8.85013 -8.46810 -6.14685 0.61682 0.70053 1.33883 1.36291 1.44643 1.50036 2.01311 2.18178 2.66418 2.77327 3.03677 3.32531 3.53305 3.80890 4.07226 4.12378 4.15159 4.19294 4.20929 4.25528 4.33114 4.45042 4.52024 4.54083 4.57812 4.60053 4.63289 4.76175 4.86053 4.89663 4.98615 5.05225 5.15304 5.16236 5.21992 5.28774 5.32546 5.58639 5.72066 5.75025 5.86766 6.01828 6.03713 6.12852 6.23418 6.26503 6.97964 7.12938 7.78696 8.76216 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018370 B = 0.002886 C = 0.002758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1523.851338 B = 9699.606664 C =10148.580374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.054 3.946 3 O -0.405 6.405 4 C 0.035 3.965 5 C 0.096 3.904 6 H 0.160 0.840 7 C 0.489 3.511 8 O -0.534 6.534 9 O -0.512 6.512 10 N -0.540 5.540 11 C 0.019 3.981 12 C 0.133 3.867 13 C -0.151 4.151 14 C -0.055 4.055 15 C -0.200 4.200 16 C 0.115 3.885 17 O -0.231 6.231 18 C -0.415 4.415 19 H 0.096 0.904 20 C -0.020 4.020 21 N -0.920 5.920 22 Si 1.016 2.984 23 H -0.259 1.259 24 H -0.268 1.268 25 H -0.259 1.259 26 C -0.244 4.244 27 C -0.053 4.053 28 H 0.048 0.952 29 H 0.052 0.948 30 H 0.089 0.911 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.424 0.576 36 H 0.085 0.915 37 H 0.063 0.937 38 H 0.052 0.948 39 H 0.069 0.931 40 H 0.066 0.934 41 H 0.149 0.851 42 H 0.118 0.882 43 H 0.273 0.727 44 H 0.112 0.888 45 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.157 -18.183 -20.764 29.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.021 4.021 3 O -0.325 6.325 4 C -0.043 4.043 5 C -0.013 4.013 6 H 0.178 0.822 7 C 0.331 3.669 8 O -0.422 6.422 9 O -0.325 6.325 10 N -0.264 5.264 11 C -0.128 4.128 12 C 0.007 3.993 13 C -0.153 4.153 14 C -0.073 4.073 15 C -0.220 4.220 16 C 0.065 3.935 17 O -0.138 6.138 18 C -0.492 4.492 19 H 0.114 0.886 20 C -0.218 4.218 21 N -0.558 5.558 22 Si 0.835 3.165 23 H -0.183 1.183 24 H -0.192 1.192 25 H -0.184 1.184 26 C -0.264 4.264 27 C -0.072 4.072 28 H 0.067 0.933 29 H 0.071 0.929 30 H 0.107 0.893 31 H 0.081 0.919 32 H 0.077 0.923 33 H 0.105 0.895 34 H 0.100 0.900 35 H 0.286 0.714 36 H 0.103 0.897 37 H 0.082 0.918 38 H 0.070 0.930 39 H 0.087 0.913 40 H 0.083 0.917 41 H 0.167 0.833 42 H 0.136 0.864 43 H 0.082 0.918 44 H 0.130 0.870 45 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 10.034 -17.455 -20.015 28.389 hybrid contribution -0.836 0.542 -0.153 1.008 sum 9.198 -16.913 -20.168 27.881 Atomic orbital electron populations 1.21768 0.94092 1.03042 1.02119 1.22577 0.95431 0.82933 1.01195 1.88112 1.21055 1.27978 1.95393 1.23175 0.82325 0.95108 1.03694 1.21584 1.01912 0.90877 0.86966 0.82242 1.23372 0.78763 0.80782 0.83993 1.90736 1.36108 1.30156 1.85187 1.84426 1.68892 1.62218 1.16975 1.61686 1.03622 1.59292 1.01821 1.22568 0.96970 0.99462 0.93782 1.20847 0.87910 0.96073 0.94494 1.19720 1.04740 0.95991 0.94801 1.20846 0.97029 0.98917 0.90498 1.20441 1.07388 0.93890 1.00242 1.19894 0.93350 0.92556 0.87711 1.83933 1.73008 1.25774 1.31056 1.21743 1.45084 0.87204 0.95130 0.88646 1.26541 0.96997 1.04273 0.93983 1.70163 1.47512 1.38476 0.99650 0.84688 0.79155 0.74302 0.78314 1.18302 1.19213 1.18378 1.21196 1.10199 1.02416 0.92562 1.20806 0.95455 0.93819 0.97079 0.93252 0.92860 0.89265 0.91889 0.92260 0.89532 0.90043 0.71447 0.89664 0.91847 0.92997 0.91293 0.91650 0.83324 0.86435 0.91779 0.87020 0.86660 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.23 10.28 71.98 0.74 -1.49 16 2 C 0.05 0.71 6.66 71.98 0.48 1.19 16 3 O -0.41 -7.31 6.11 -148.98 -0.91 -8.22 16 4 C 0.03 0.45 5.06 71.98 0.36 0.81 16 5 C 0.10 1.64 2.79 44.17 0.12 1.76 16 6 H 0.16 1.69 8.02 -2.39 -0.02 1.67 16 7 C 0.49 10.56 6.73 71.24 0.48 11.04 16 8 O -0.53 -16.62 15.49 21.97 0.34 -16.27 16 9 O -0.51 -7.35 13.35 -51.39 -0.69 -8.04 16 10 N -0.54 -12.82 4.37 -906.05 -3.96 -16.78 16 11 C 0.02 0.36 9.18 127.69 1.17 1.53 16 12 C 0.13 3.74 3.21 85.56 0.27 4.01 16 13 C -0.15 -5.36 4.90 -19.83 -0.10 -5.46 16 14 C -0.05 -1.90 7.87 22.25 0.18 -1.72 16 15 C -0.20 -8.82 9.99 22.39 0.22 -8.60 16 16 C 0.12 6.08 6.65 22.58 0.15 6.23 16 17 O -0.23 -14.50 9.76 -22.84 -0.22 -14.72 16 18 C -0.42 -25.42 9.49 67.92 0.64 -24.77 16 19 H 0.10 5.48 5.20 -2.91 -0.02 5.46 16 20 C -0.02 -1.21 5.49 84.83 0.47 -0.74 16 21 N -0.92 -57.87 13.67 21.61 0.30 -57.58 16 22 Si 1.02 44.72 29.55 68.60 2.03 46.75 16 23 H -0.26 -10.76 7.11 99.48 0.71 -10.05 16 24 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 25 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 26 C -0.24 -11.89 9.17 22.39 0.21 -11.69 16 27 C -0.05 -2.20 9.69 22.25 0.22 -1.98 16 28 H 0.05 0.89 8.14 -2.39 -0.02 0.87 16 29 H 0.05 0.85 8.14 -2.38 -0.02 0.83 16 30 H 0.09 0.91 8.14 -2.39 -0.02 0.89 16 31 H 0.06 0.62 8.14 -2.38 -0.02 0.60 16 32 H 0.06 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.09 0.77 8.14 -2.39 -0.02 0.75 16 34 H 0.08 0.79 6.59 -2.39 -0.02 0.78 16 35 H 0.42 3.25 9.10 -74.06 -0.67 2.57 16 36 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 37 H 0.06 1.54 5.67 -2.39 -0.01 1.53 16 38 H 0.05 0.71 6.58 -2.39 -0.02 0.69 16 39 H 0.07 2.25 5.59 -2.39 -0.01 2.24 16 40 H 0.07 1.63 6.13 -2.39 -0.01 1.61 16 41 H 0.15 3.91 7.94 -2.91 -0.02 3.89 16 42 H 0.12 5.01 8.06 -2.91 -0.02 4.99 16 43 H 0.27 15.72 8.31 -92.71 -0.77 14.95 16 44 H 0.11 5.59 5.64 -2.91 -0.02 5.57 16 45 H 0.12 4.64 8.06 -2.91 -0.02 4.62 16 Total: -1.00 -81.81 368.67 2.85 -78.96 By element: Atomic # 1 Polarization: 25.44 SS G_CDS: 0.35 Total: 25.78 kcal Atomic # 6 Polarization: -35.50 SS G_CDS: 5.62 Total: -29.88 kcal Atomic # 7 Polarization: -70.70 SS G_CDS: -3.66 Total: -74.36 kcal Atomic # 8 Polarization: -45.77 SS G_CDS: -1.48 Total: -47.25 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -81.81 2.85 -78.96 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596883945.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.348 kcal (2) G-P(sol) polarization free energy of solvation -81.808 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.155 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.850 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.957 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds