Wall clock time and date at job start Tue Mar 31 2020 13:37:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47137 * 2 1 4 4 C 1.42895 * 113.99975 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47273 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.47300 * 175.00426 * 5 4 3 7 7 C 1.50697 * 109.47095 * 54.99605 * 5 4 3 8 8 O 1.20829 * 120.00343 * 240.00116 * 7 5 4 9 9 O 1.34231 * 120.00016 * 60.00557 * 7 5 4 10 10 N 1.46900 * 109.46718 * 294.99980 * 5 4 3 11 11 C 1.46902 * 111.00347 * 303.94983 * 10 5 4 12 12 C 1.46904 * 110.99797 * 179.97438 * 10 5 4 13 13 C 1.50702 * 109.47122 * 190.00268 * 12 10 5 14 14 C 1.38295 * 119.93331 * 89.99791 * 13 12 10 15 15 C 1.38099 * 120.06865 * 180.29799 * 14 13 12 16 16 C 1.38882 * 119.93206 * 359.47410 * 15 14 13 17 17 O 1.35746 * 120.07145 * 180.25590 * 16 15 14 18 18 C 1.34834 * 117.00340 * 174.73672 * 17 16 15 19 19 H 1.08003 * 119.99155 * 5.05417 * 18 17 16 20 20 C 1.38652 * 120.00189 * 185.05311 * 18 17 16 21 21 N 1.31551 * 120.00092 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99812 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47231 * 59.99795 * 22 20 18 24 24 H 1.48500 * 109.47174 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46985 * 299.99579 * 22 20 18 26 26 C 1.38876 * 119.85943 * 0.52538 * 16 15 14 27 27 C 1.38100 * 119.93177 * 359.72571 * 26 16 15 28 28 H 1.09004 * 109.47053 * 299.99449 * 1 2 3 29 29 H 1.09001 * 109.47678 * 59.99646 * 1 2 3 30 30 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47053 * 240.00551 * 2 1 3 32 32 H 1.08993 * 109.47393 * 120.00236 * 2 1 3 33 33 H 1.08999 * 109.47129 * 60.00242 * 4 3 2 34 34 H 1.09004 * 109.47441 * 299.99683 * 4 3 2 35 35 H 0.96691 * 117.00504 * 180.02562 * 9 7 5 36 36 H 1.08995 * 109.47379 * 296.04914 * 11 10 5 37 37 H 1.08996 * 109.46626 * 56.05070 * 11 10 5 38 38 H 1.09002 * 109.47413 * 176.04554 * 11 10 5 39 39 H 1.08992 * 109.47083 * 70.00141 * 12 10 5 40 40 H 1.08999 * 109.46944 * 309.99718 * 12 10 5 41 41 H 1.08000 * 119.96836 * 0.02607 * 14 13 12 42 42 H 1.08002 * 120.03655 * 179.72759 * 15 14 13 43 43 H 0.97006 * 120.00187 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.03796 * 179.70626 * 26 16 15 45 45 H 1.07997 * 119.96864 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 1 4.9082 3.0254 0.0892 7 6 3.1680 3.6332 1.1646 8 8 2.4108 4.5544 0.9694 9 8 3.4237 3.2288 2.4188 10 7 3.3855 3.5631 -1.2546 11 6 3.9332 2.8517 -2.4173 12 6 3.7476 4.9864 -1.2892 13 6 3.0742 5.6476 -2.4641 14 6 1.8188 6.2081 -2.3143 15 6 1.1965 6.8093 -3.3906 16 6 1.8373 6.8604 -4.6217 17 8 1.2304 7.4553 -5.6802 18 6 1.9500 7.5672 -6.8150 19 1 2.9310 7.1198 -6.8785 20 6 1.4306 8.2565 -7.9001 21 7 0.2360 8.8018 -7.8224 22 14 2.4274 8.4109 -9.4724 23 1 2.7147 7.0573 -10.0113 24 1 1.6549 9.1892 -10.4738 25 1 3.7052 9.1095 -9.1819 26 6 3.0980 6.2967 -4.7689 27 6 3.7128 5.6923 -3.6901 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.8332 0.9767 -0.8908 34 1 3.8340 0.9765 0.8892 35 1 2.9783 3.7048 3.1329 36 1 5.0200 2.9356 -2.4157 37 1 3.6499 1.8004 -2.3665 38 1 3.5362 3.2912 -3.3324 39 1 4.8287 5.0839 -1.3879 40 1 3.4222 5.4666 -0.3664 41 1 1.3227 6.1717 -1.3557 42 1 0.2142 7.2429 -3.2741 43 1 -0.1276 9.2837 -8.5818 44 1 3.5969 6.3306 -5.7261 45 1 4.6930 5.2534 -3.8040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001596883947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:18 Heat of formation + Delta-G solvation = -116.712441 kcal Electronic energy + Delta-G solvation = -27554.029140 eV Core-core repulsion = 23538.447765 eV Total energy + Delta-G solvation = -4015.581376 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -40.70902 -39.03278 -38.39136 -37.41265 -36.21616 -35.70880 -32.43298 -31.97870 -30.46426 -30.05873 -29.01806 -26.94498 -25.40983 -24.30240 -23.14605 -22.97285 -21.80330 -20.57214 -20.18008 -18.24734 -17.88559 -17.33874 -16.90773 -16.77036 -16.19098 -15.96447 -15.32827 -15.06146 -14.53548 -14.45682 -14.19448 -13.95144 -13.68929 -13.42736 -13.40602 -13.22044 -12.89651 -12.58391 -12.55220 -12.37716 -12.11566 -11.88767 -11.79720 -11.60597 -11.52484 -11.28336 -11.21446 -11.16199 -10.73833 -10.60945 -10.48176 -10.39194 -10.07858 -9.76062 -9.25038 -8.77209 -8.30924 -8.03700 -7.07660 -6.38995 -3.97770 2.14077 2.32256 2.38709 2.73460 3.15804 3.16959 3.19837 3.38976 3.85234 4.01328 4.54696 4.72386 4.80865 4.83778 4.86977 5.01387 5.09021 5.14577 5.17262 5.20614 5.32946 5.35090 5.40380 5.50749 5.53249 5.61225 5.72545 5.81649 5.93006 5.97009 6.03992 6.12098 6.32672 6.43432 6.54363 6.83628 6.88570 6.97071 7.01787 7.06544 7.16945 7.37235 7.51837 7.55108 7.84036 7.94999 8.06320 9.06594 9.78829 10.79268 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002649 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.023791 B =10568.932405 C =10900.327451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.369 6.369 4 C 0.071 3.929 5 C 0.096 3.904 6 H 0.088 0.912 7 C 0.488 3.512 8 O -0.481 6.481 9 O -0.522 6.522 10 N -0.509 5.509 11 C 0.022 3.978 12 C 0.097 3.903 13 C -0.173 4.173 14 C -0.045 4.045 15 C -0.196 4.196 16 C 0.157 3.843 17 O -0.180 6.180 18 C -0.391 4.391 19 H 0.090 0.910 20 C 0.039 3.961 21 N -0.864 5.864 22 Si 0.940 3.060 23 H -0.270 1.270 24 H -0.278 1.278 25 H -0.271 1.271 26 C -0.237 4.237 27 C -0.068 4.068 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.068 0.932 31 H 0.048 0.952 32 H 0.045 0.955 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.410 0.590 36 H 0.024 0.976 37 H 0.067 0.933 38 H 0.088 0.912 39 H 0.027 0.973 40 H 0.096 0.904 41 H 0.115 0.885 42 H 0.115 0.885 43 H 0.270 0.730 44 H 0.125 0.875 45 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.762 -16.858 17.548 25.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.288 6.288 4 C -0.006 4.006 5 C -0.013 4.013 6 H 0.105 0.895 7 C 0.328 3.672 8 O -0.366 6.366 9 O -0.334 6.334 10 N -0.235 5.235 11 C -0.125 4.125 12 C -0.028 4.028 13 C -0.174 4.174 14 C -0.063 4.063 15 C -0.215 4.215 16 C 0.103 3.897 17 O -0.083 6.083 18 C -0.468 4.468 19 H 0.108 0.892 20 C -0.165 4.165 21 N -0.499 5.499 22 Si 0.765 3.235 23 H -0.196 1.196 24 H -0.203 1.203 25 H -0.196 1.196 26 C -0.256 4.256 27 C -0.086 4.086 28 H 0.080 0.920 29 H 0.086 0.914 30 H 0.087 0.913 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.085 0.915 34 H 0.081 0.919 35 H 0.269 0.731 36 H 0.042 0.958 37 H 0.086 0.914 38 H 0.106 0.894 39 H 0.046 0.954 40 H 0.114 0.886 41 H 0.133 0.867 42 H 0.133 0.867 43 H 0.080 0.920 44 H 0.142 0.858 45 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges 7.717 -16.440 16.965 24.852 hybrid contribution 1.315 0.161 -0.385 1.379 sum 9.032 -16.278 16.580 24.929 Atomic orbital electron populations 1.21722 0.93591 1.01998 1.03526 1.22452 0.95896 0.83793 0.99714 1.88075 1.19396 1.26003 1.95280 1.22508 0.83382 0.93272 1.01420 1.21226 0.97740 0.93620 0.88761 0.89518 1.22916 0.79557 0.81485 0.83275 1.90700 1.32982 1.27978 1.84948 1.84464 1.69215 1.62596 1.17163 1.61809 1.59806 1.02889 0.98975 1.22550 0.96653 0.98960 0.94362 1.21204 0.95916 0.86273 0.99445 1.18953 0.97152 1.07111 0.94171 1.20534 0.93602 0.94896 0.97307 1.20238 1.01654 1.08422 0.91173 1.19400 0.90898 0.91087 0.88311 1.83982 1.39267 1.67159 1.17903 1.21262 1.01132 1.35718 0.88639 0.89222 1.25269 0.96510 0.95795 0.98959 1.70032 1.15515 1.32845 1.31550 0.85803 0.79010 0.78750 0.79967 1.19556 1.20319 1.19575 1.21082 0.97519 1.07217 0.99769 1.20590 0.98011 0.97715 0.92317 0.91981 0.91423 0.91278 0.93420 0.93708 0.91455 0.91882 0.73135 0.95788 0.91438 0.89376 0.95439 0.88559 0.86699 0.86658 0.92044 0.85765 0.88069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 10.28 37.16 0.38 -0.92 16 2 C 0.06 0.51 6.66 37.16 0.25 0.76 16 3 O -0.37 -4.35 9.77 -35.23 -0.34 -4.70 16 4 C 0.07 0.66 5.19 37.16 0.19 0.85 16 5 C 0.10 1.04 2.39 -68.86 -0.16 0.88 16 6 H 0.09 0.73 8.14 -51.93 -0.42 0.31 16 7 C 0.49 5.81 6.79 36.00 0.24 6.06 16 8 O -0.48 -7.46 14.64 -18.75 -0.27 -7.73 16 9 O -0.52 -4.45 13.35 -39.26 -0.52 -4.97 16 10 N -0.51 -6.96 4.37 -237.73 -1.04 -8.00 16 11 C 0.02 0.26 8.77 60.07 0.53 0.79 16 12 C 0.10 1.47 4.71 -4.97 -0.02 1.45 16 13 C -0.17 -3.16 4.89 -104.57 -0.51 -3.67 16 14 C -0.04 -0.89 9.69 -39.61 -0.38 -1.28 16 15 C -0.20 -4.44 9.99 -39.39 -0.39 -4.83 16 16 C 0.16 3.94 6.65 -39.11 -0.26 3.68 16 17 O -0.18 -5.29 9.76 0.05 0.00 -5.29 16 18 C -0.39 -11.17 9.49 30.89 0.29 -10.88 16 19 H 0.09 2.36 5.20 -52.48 -0.27 2.09 16 20 C 0.04 1.08 5.49 -17.52 -0.10 0.99 16 21 N -0.86 -25.88 13.67 55.48 0.76 -25.12 16 22 Si 0.94 20.85 29.55 -169.99 -5.02 15.83 16 23 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 24 H -0.28 -6.03 7.11 56.52 0.40 -5.63 16 25 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 26 C -0.24 -5.27 9.17 -39.40 -0.36 -5.63 16 27 C -0.07 -1.27 7.95 -39.61 -0.32 -1.58 16 28 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 29 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 30 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 32 H 0.04 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.07 0.53 5.98 -51.93 -0.31 0.22 16 34 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.41 1.92 9.10 45.56 0.41 2.33 16 36 H 0.02 0.24 8.14 -51.93 -0.42 -0.18 16 37 H 0.07 0.70 5.90 -51.93 -0.31 0.39 16 38 H 0.09 1.27 6.16 -51.93 -0.32 0.95 16 39 H 0.03 0.37 8.06 -51.93 -0.42 -0.05 16 40 H 0.10 1.53 5.15 -51.93 -0.27 1.27 16 41 H 0.12 2.18 8.06 -52.49 -0.42 1.76 16 42 H 0.12 2.55 8.06 -52.49 -0.42 2.13 16 43 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 44 H 0.12 2.76 5.64 -52.49 -0.30 2.46 16 45 H 0.10 1.60 8.03 -52.49 -0.42 1.18 16 LS Contribution 373.35 15.07 5.63 5.63 Total: -1.00 -34.91 373.35 -7.00 -41.91 By element: Atomic # 1 Polarization: 11.35 SS G_CDS: -5.56 Total: 5.79 kcal Atomic # 6 Polarization: -12.73 SS G_CDS: -0.62 Total: -13.35 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: -0.28 Total: -33.12 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -1.14 Total: -22.69 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.91 -7.00 -41.91 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596883947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.800 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.709 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.003 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.712 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds