Wall clock time and date at job start Tue Mar 31 2020 13:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42901 * 109.47137 * 2 1 4 4 C 1.42895 * 113.99975 * 180.02562 * 3 2 1 5 5 C 1.53006 * 109.47273 * 180.02562 * 4 3 2 6 6 H 1.08993 * 109.47300 * 175.00426 * 5 4 3 7 7 C 1.50697 * 109.47095 * 54.99605 * 5 4 3 8 8 O 1.20829 * 120.00343 * 240.00116 * 7 5 4 9 9 O 1.34231 * 120.00016 * 60.00557 * 7 5 4 10 10 N 1.46900 * 109.46718 * 294.99980 * 5 4 3 11 11 C 1.46902 * 111.00347 * 303.94983 * 10 5 4 12 12 C 1.46904 * 110.99797 * 179.97438 * 10 5 4 13 13 C 1.50702 * 109.47122 * 190.00268 * 12 10 5 14 14 C 1.38295 * 119.93331 * 89.99791 * 13 12 10 15 15 C 1.38099 * 120.06865 * 180.29799 * 14 13 12 16 16 C 1.38882 * 119.93206 * 359.47410 * 15 14 13 17 17 O 1.35746 * 120.07145 * 180.25590 * 16 15 14 18 18 C 1.34834 * 117.00340 * 174.73672 * 17 16 15 19 19 H 1.08003 * 119.99155 * 5.05417 * 18 17 16 20 20 C 1.38652 * 120.00189 * 185.05311 * 18 17 16 21 21 N 1.31551 * 120.00092 * 0.02562 * 20 18 17 22 22 Si 1.86801 * 119.99812 * 180.02562 * 20 18 17 23 23 H 1.48499 * 109.47231 * 59.99795 * 22 20 18 24 24 H 1.48500 * 109.47174 * 180.02562 * 22 20 18 25 25 H 1.48506 * 109.46985 * 299.99579 * 22 20 18 26 26 C 1.38876 * 119.85943 * 0.52538 * 16 15 14 27 27 C 1.38100 * 119.93177 * 359.72571 * 26 16 15 28 28 H 1.09004 * 109.47053 * 299.99449 * 1 2 3 29 29 H 1.09001 * 109.47678 * 59.99646 * 1 2 3 30 30 H 1.09001 * 109.47406 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47053 * 240.00551 * 2 1 3 32 32 H 1.08993 * 109.47393 * 120.00236 * 2 1 3 33 33 H 1.08999 * 109.47129 * 60.00242 * 4 3 2 34 34 H 1.09004 * 109.47441 * 299.99683 * 4 3 2 35 35 H 0.96691 * 117.00504 * 180.02562 * 9 7 5 36 36 H 1.08995 * 109.47379 * 296.04914 * 11 10 5 37 37 H 1.08996 * 109.46626 * 56.05070 * 11 10 5 38 38 H 1.09002 * 109.47413 * 176.04554 * 11 10 5 39 39 H 1.08992 * 109.47083 * 70.00141 * 12 10 5 40 40 H 1.08999 * 109.46944 * 309.99718 * 12 10 5 41 41 H 1.08000 * 119.96836 * 0.02607 * 14 13 12 42 42 H 1.08002 * 120.03655 * 179.72759 * 15 14 13 43 43 H 0.97006 * 120.00187 * 180.02562 * 21 20 18 44 44 H 1.07996 * 120.03796 * 179.70626 * 26 16 15 45 45 H 1.07997 * 119.96864 * 179.97438 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0063 1.3473 0.0000 4 6 3.4308 1.4601 -0.0006 5 6 3.8254 2.9384 0.0001 6 1 4.9082 3.0254 0.0892 7 6 3.1680 3.6332 1.1646 8 8 2.4108 4.5544 0.9694 9 8 3.4237 3.2288 2.4188 10 7 3.3855 3.5631 -1.2546 11 6 3.9332 2.8517 -2.4173 12 6 3.7476 4.9864 -1.2892 13 6 3.0742 5.6476 -2.4641 14 6 1.8188 6.2081 -2.3143 15 6 1.1965 6.8093 -3.3906 16 6 1.8373 6.8604 -4.6217 17 8 1.2304 7.4553 -5.6802 18 6 1.9500 7.5672 -6.8150 19 1 2.9310 7.1198 -6.8785 20 6 1.4306 8.2565 -7.9001 21 7 0.2360 8.8018 -7.8224 22 14 2.4274 8.4109 -9.4724 23 1 2.7147 7.0573 -10.0113 24 1 1.6549 9.1892 -10.4738 25 1 3.7052 9.1095 -9.1819 26 6 3.0980 6.2967 -4.7689 27 6 3.7128 5.6923 -3.6901 28 1 -0.3633 0.5138 0.8901 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.8933 -0.5138 -0.8901 32 1 1.8933 -0.5138 0.8899 33 1 3.8332 0.9767 -0.8908 34 1 3.8340 0.9765 0.8892 35 1 2.9783 3.7048 3.1329 36 1 5.0200 2.9356 -2.4157 37 1 3.6499 1.8004 -2.3665 38 1 3.5362 3.2912 -3.3324 39 1 4.8287 5.0839 -1.3879 40 1 3.4222 5.4666 -0.3664 41 1 1.3227 6.1717 -1.3557 42 1 0.2142 7.2429 -3.2741 43 1 -0.1276 9.2837 -8.5818 44 1 3.5969 6.3306 -5.7261 45 1 4.6930 5.2534 -3.8040 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001596883947.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:37:16 Heat of formation + Delta-G solvation = -142.532981 kcal Electronic energy + Delta-G solvation = -27555.148803 eV Core-core repulsion = 23538.447765 eV Total energy + Delta-G solvation = -4016.701039 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.61082 -40.75099 -39.29066 -38.67789 -37.44873 -36.74902 -34.32927 -33.02099 -31.79706 -31.54602 -30.09826 -28.16240 -27.30554 -25.32678 -24.26473 -23.64271 -23.51876 -21.96564 -21.25404 -19.82022 -19.06457 -18.80687 -18.14050 -17.53853 -17.13588 -16.85145 -16.40810 -16.34874 -16.17298 -15.92873 -15.48070 -15.42418 -15.08796 -14.86684 -14.49254 -14.34095 -14.18223 -13.93818 -13.62688 -13.52166 -13.36559 -12.93685 -12.89345 -12.86198 -12.73224 -12.43818 -12.36263 -12.21235 -12.16460 -12.13189 -12.08607 -11.73832 -11.21450 -11.06317 -10.76546 -10.45334 -9.74944 -9.26397 -8.87300 -8.45430 -6.14011 0.61954 0.68756 1.29009 1.35300 1.46679 1.52276 1.97993 2.19145 2.70622 2.74616 3.00691 3.29604 3.53421 3.82055 3.96373 4.05055 4.17340 4.19543 4.22033 4.24167 4.36174 4.41751 4.42910 4.53510 4.54575 4.59843 4.63523 4.68058 4.81196 4.84082 4.88152 5.05627 5.11050 5.14879 5.17611 5.28433 5.33091 5.58942 5.71113 5.71957 5.83306 5.97476 6.03997 6.10013 6.25433 6.34534 6.98783 7.08631 7.80765 8.78046 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018838 B = 0.002649 C = 0.002568 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.023791 B =10568.932405 C =10900.327451 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.054 3.946 3 O -0.404 6.404 4 C 0.070 3.930 5 C 0.093 3.907 6 H 0.121 0.879 7 C 0.489 3.511 8 O -0.528 6.528 9 O -0.510 6.510 10 N -0.533 5.533 11 C 0.022 3.978 12 C 0.102 3.898 13 C -0.148 4.148 14 C -0.047 4.047 15 C -0.209 4.209 16 C 0.117 3.883 17 O -0.234 6.234 18 C -0.414 4.414 19 H 0.104 0.896 20 C -0.025 4.025 21 N -0.924 5.924 22 Si 1.020 2.980 23 H -0.255 1.255 24 H -0.273 1.273 25 H -0.257 1.257 26 C -0.240 4.240 27 C -0.056 4.056 28 H 0.052 0.948 29 H 0.045 0.955 30 H 0.091 0.909 31 H 0.058 0.942 32 H 0.064 0.936 33 H 0.084 0.916 34 H 0.087 0.913 35 H 0.426 0.574 36 H 0.051 0.949 37 H 0.082 0.918 38 H 0.060 0.940 39 H 0.054 0.946 40 H 0.089 0.911 41 H 0.125 0.875 42 H 0.106 0.894 43 H 0.272 0.728 44 H 0.123 0.877 45 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.344 -19.556 18.905 29.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.022 4.022 3 O -0.324 6.324 4 C -0.007 4.007 5 C -0.016 4.016 6 H 0.138 0.862 7 C 0.332 3.668 8 O -0.416 6.416 9 O -0.324 6.324 10 N -0.259 5.259 11 C -0.124 4.124 12 C -0.024 4.024 13 C -0.149 4.149 14 C -0.066 4.066 15 C -0.228 4.228 16 C 0.067 3.933 17 O -0.141 6.141 18 C -0.490 4.490 19 H 0.121 0.879 20 C -0.222 4.222 21 N -0.562 5.562 22 Si 0.839 3.161 23 H -0.180 1.180 24 H -0.197 1.197 25 H -0.181 1.181 26 C -0.259 4.259 27 C -0.074 4.074 28 H 0.071 0.929 29 H 0.064 0.936 30 H 0.110 0.890 31 H 0.076 0.924 32 H 0.082 0.918 33 H 0.102 0.898 34 H 0.105 0.895 35 H 0.288 0.712 36 H 0.069 0.931 37 H 0.101 0.899 38 H 0.078 0.922 39 H 0.072 0.928 40 H 0.108 0.892 41 H 0.143 0.857 42 H 0.124 0.876 43 H 0.081 0.919 44 H 0.140 0.860 45 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 11.334 -19.191 18.400 28.902 hybrid contribution 0.263 0.797 -0.407 0.933 sum 11.597 -18.394 17.994 28.224 Atomic orbital electron populations 1.21753 0.94189 1.03006 1.01963 1.22589 0.95506 0.82944 1.01113 1.88039 1.21041 1.27714 1.95583 1.22676 0.82377 0.92269 1.03349 1.21435 0.99389 0.94041 0.86706 0.86161 1.23252 0.78612 0.80631 0.84347 1.90692 1.35134 1.30092 1.85695 1.84421 1.68916 1.62331 1.16698 1.61583 1.61319 1.02103 1.00911 1.22545 0.98101 0.99359 0.92428 1.21105 0.96873 0.87371 0.97036 1.19458 0.95845 1.04186 0.95382 1.20722 0.94524 0.94577 0.96734 1.20388 1.01701 1.09184 0.91556 1.19861 0.92666 0.92543 0.88271 1.83948 1.41097 1.69860 1.19209 1.21821 1.01864 1.36295 0.89050 0.87920 1.26639 0.97748 0.94982 1.02822 1.70194 1.17986 1.34940 1.33070 0.84630 0.77424 0.79462 0.74559 1.17958 1.19724 1.18078 1.21225 0.96554 1.07180 1.00969 1.20936 0.99308 0.96124 0.91027 0.92892 0.93574 0.89036 0.92390 0.91761 0.89835 0.89497 0.71204 0.93087 0.89905 0.92168 0.92765 0.89248 0.85698 0.87611 0.91873 0.85958 0.83895 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.45 10.28 71.98 0.74 -1.71 16 2 C 0.05 0.82 6.66 71.98 0.48 1.30 16 3 O -0.40 -8.55 9.77 -148.98 -1.46 -10.01 16 4 C 0.07 1.00 5.19 71.98 0.37 1.38 16 5 C 0.09 1.64 2.39 44.17 0.11 1.75 16 6 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 7 C 0.49 10.34 6.79 71.23 0.48 10.82 16 8 O -0.53 -15.65 14.64 21.95 0.32 -15.33 16 9 O -0.51 -7.08 13.35 -51.43 -0.69 -7.76 16 10 N -0.53 -12.82 4.37 -906.05 -3.96 -16.78 16 11 C 0.02 0.45 8.77 127.69 1.12 1.57 16 12 C 0.10 2.76 4.71 85.56 0.40 3.16 16 13 C -0.15 -5.14 4.89 -19.83 -0.10 -5.23 16 14 C -0.05 -1.89 9.69 22.25 0.22 -1.67 16 15 C -0.21 -9.96 9.99 22.39 0.22 -9.73 16 16 C 0.12 6.16 6.65 22.58 0.15 6.31 16 17 O -0.23 -14.72 9.76 -22.74 -0.22 -14.95 16 18 C -0.41 -24.75 9.49 67.92 0.64 -24.11 16 19 H 0.10 5.57 5.20 -2.91 -0.02 5.55 16 20 C -0.02 -1.44 5.49 84.83 0.47 -0.98 16 21 N -0.92 -58.26 13.67 21.61 0.30 -57.96 16 22 Si 1.02 43.51 29.55 68.60 2.03 45.54 16 23 H -0.26 -10.14 7.11 99.48 0.71 -9.43 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 H -0.26 -10.22 7.11 99.48 0.71 -9.52 16 26 C -0.24 -10.76 9.17 22.39 0.21 -10.56 16 27 C -0.06 -1.96 7.95 22.25 0.18 -1.79 16 28 H 0.05 0.92 8.14 -2.38 -0.02 0.90 16 29 H 0.05 0.92 8.14 -2.39 -0.02 0.90 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.06 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 33 H 0.08 0.92 5.98 -2.39 -0.01 0.90 16 34 H 0.09 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.43 2.89 9.10 -74.06 -0.67 2.21 16 36 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 37 H 0.08 1.40 5.90 -2.39 -0.01 1.39 16 38 H 0.06 1.55 6.16 -2.39 -0.01 1.54 16 39 H 0.05 1.19 8.06 -2.39 -0.02 1.17 16 40 H 0.09 2.63 5.15 -2.39 -0.01 2.62 16 41 H 0.13 4.76 8.06 -2.91 -0.02 4.74 16 42 H 0.11 5.08 8.06 -2.91 -0.02 5.05 16 43 H 0.27 15.73 8.31 -92.70 -0.77 14.96 16 44 H 0.12 5.46 5.64 -2.91 -0.02 5.44 16 45 H 0.14 3.89 8.03 -2.91 -0.02 3.87 16 Total: -1.00 -82.01 373.35 2.36 -79.65 By element: Atomic # 1 Polarization: 26.74 SS G_CDS: 0.34 Total: 27.09 kcal Atomic # 6 Polarization: -35.17 SS G_CDS: 5.69 Total: -29.48 kcal Atomic # 7 Polarization: -71.08 SS G_CDS: -3.66 Total: -74.74 kcal Atomic # 8 Polarization: -46.01 SS G_CDS: -2.04 Total: -48.05 kcal Atomic # 14 Polarization: 43.51 SS G_CDS: 2.03 Total: 45.54 kcal Total: -82.01 2.36 -79.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001596883947.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.885 kcal (2) G-P(sol) polarization free energy of solvation -82.005 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -144.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.357 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.648 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.533 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds