Wall clock time and date at job start Tue Mar 31 2020 13:50:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46895 * 111.00060 * 2 1 4 4 C 1.50701 * 109.47328 * 293.95339 * 3 2 1 5 5 H 1.07999 * 119.99866 * 0.02562 * 4 3 2 6 6 C 1.37875 * 120.00069 * 179.97438 * 4 3 2 7 7 N 1.31522 * 120.00059 * 0.02562 * 6 4 3 8 8 Si 1.86796 * 120.00103 * 180.02562 * 6 4 3 9 9 H 1.48497 * 109.47187 * 90.00081 * 8 6 4 10 10 H 1.48504 * 109.47165 * 210.00084 * 8 6 4 11 11 H 1.48496 * 109.47145 * 330.00131 * 8 6 4 12 12 C 1.46900 * 110.99568 * 123.95750 * 2 1 3 13 13 C 1.52994 * 109.47557 * 66.04643 * 12 2 1 14 14 H 1.09008 * 109.46970 * 304.99717 * 13 12 2 15 15 O 1.42903 * 109.47242 * 64.99196 * 13 12 2 16 16 C 1.52997 * 109.47404 * 184.99766 * 13 12 2 17 17 O 1.42898 * 109.47319 * 174.99993 * 16 13 12 18 18 C 1.35900 * 117.00172 * 179.97438 * 17 16 13 19 19 C 1.38746 * 120.05467 * 359.72752 * 18 17 16 20 20 C 1.38131 * 119.94707 * 179.69741 * 19 18 17 21 21 C 1.38290 * 120.04957 * 0.59675 * 20 19 18 22 22 C 1.38250 * 120.11062 * 359.67603 * 21 20 19 23 23 C 1.50704 * 119.96871 * 180.02562 * 22 21 20 24 24 C 1.50697 * 109.47316 * 270.02249 * 23 22 21 25 25 O 1.20830 * 119.99674 * 0.02562 * 24 23 22 26 26 O 1.34224 * 120.00229 * 179.97438 * 24 23 22 27 27 C 1.38162 * 120.05723 * 0.02573 * 22 21 20 28 28 H 1.08999 * 109.47337 * 296.04555 * 1 2 3 29 29 H 1.09001 * 109.47305 * 56.04176 * 1 2 3 30 30 H 1.09001 * 109.47673 * 176.04501 * 1 2 3 31 31 H 1.09001 * 109.47182 * 53.95622 * 3 2 1 32 32 H 1.08997 * 109.47233 * 173.95501 * 3 2 1 33 33 H 0.97001 * 120.00205 * 179.97438 * 7 6 4 34 34 H 1.09001 * 109.46898 * 306.03808 * 12 2 1 35 35 H 1.09009 * 109.46674 * 186.04499 * 12 2 1 36 36 H 0.96705 * 113.99520 * 60.00664 * 15 13 12 37 37 H 1.09002 * 109.47153 * 54.99686 * 16 13 12 38 38 H 1.09001 * 109.46832 * 294.99876 * 16 13 12 39 39 H 1.08010 * 120.02919 * 359.97292 * 19 18 17 40 40 H 1.07993 * 119.97567 * 180.29505 * 20 19 18 41 41 H 1.07997 * 119.94208 * 179.70200 * 21 20 19 42 42 H 1.09003 * 109.46632 * 30.02434 * 23 22 21 43 43 H 1.08996 * 109.46429 * 150.02007 * 23 22 21 44 44 H 0.96703 * 117.00125 * 179.97438 * 26 24 23 45 45 H 1.07998 * 120.02891 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6370 2.0471 -1.2984 5 1 1.0740 1.5115 -2.0485 6 6 2.0268 3.3495 -1.5284 7 7 2.7120 4.0019 -0.6149 8 14 1.5819 4.1873 -3.1376 9 1 0.2695 4.8674 -2.9952 10 1 2.6239 5.1888 -3.4789 11 1 1.4986 3.1718 -4.2179 12 6 1.9954 -0.7661 1.1376 13 6 1.6314 -2.2426 0.9703 14 1 0.5530 -2.3389 0.8432 15 8 2.2954 -2.7696 -0.1801 16 6 2.0698 -3.0200 2.2130 17 8 1.6271 -4.3746 2.1083 18 6 1.9371 -5.2063 3.1374 19 6 2.6577 -4.7298 4.2232 20 6 2.9662 -5.5755 5.2708 21 6 2.5681 -6.8993 5.2324 22 6 1.8549 -7.3779 4.1491 23 6 1.4222 -8.8210 4.1109 24 6 2.4943 -9.6497 3.4515 25 8 3.5063 -9.1226 3.0539 26 8 2.3256 -10.9734 3.3069 27 6 1.5386 -6.5345 3.1016 28 1 -0.3634 0.4512 0.9233 29 1 -0.3634 0.5740 -0.8524 30 1 -0.3634 -1.0252 -0.0709 31 1 1.5612 1.9273 0.8309 32 1 3.0797 1.3444 0.1082 33 1 2.9867 4.9180 -0.7768 34 1 1.5611 -0.3872 2.0628 35 1 3.0797 -0.6612 1.1756 36 1 3.2600 -2.7167 -0.1361 37 1 1.6329 -2.5625 3.1007 38 1 3.1569 -2.9979 2.2905 39 1 2.9733 -3.6972 4.2512 40 1 3.5229 -5.2039 6.1183 41 1 2.8144 -7.5602 6.0503 42 1 1.2602 -9.1788 5.1277 43 1 0.4956 -8.9074 3.5434 44 1 3.0407 -11.4628 2.8775 45 1 0.9811 -6.9087 2.2557 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598469319.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:34 Heat of formation + Delta-G solvation = -149.928500 kcal Electronic energy + Delta-G solvation = -26245.404197 eV Core-core repulsion = 22228.382465 eV Total energy + Delta-G solvation = -4017.021732 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.86510 -40.15821 -38.41626 -37.27466 -36.43419 -35.42800 -33.12785 -32.55944 -31.15446 -29.78799 -28.39959 -27.27792 -26.44897 -24.27212 -23.13027 -22.64235 -21.59015 -20.81147 -20.24077 -18.50777 -17.96052 -16.94910 -16.87103 -16.53881 -16.50008 -16.27001 -16.00328 -15.36391 -14.99609 -14.77110 -14.57200 -14.28153 -13.74401 -13.69916 -13.51188 -13.41534 -13.18336 -12.69378 -12.63643 -12.38975 -11.94283 -11.92809 -11.86169 -11.43824 -11.34973 -11.12927 -11.06758 -10.95331 -10.91740 -10.77301 -10.70365 -10.30683 -10.04302 -9.71553 -9.18055 -9.16833 -8.45521 -8.38269 -7.26434 -6.04481 -4.05527 0.94091 1.22682 1.82210 2.65096 2.97144 3.31723 3.37890 3.43319 3.57135 4.12795 4.39219 4.46281 4.55490 4.64297 4.68520 4.83392 4.89718 4.95225 4.97205 5.03085 5.07433 5.22521 5.30325 5.31314 5.37762 5.45104 5.53752 5.73888 5.94295 6.03908 6.09933 6.12207 6.15730 6.22165 6.23119 6.31009 6.49091 6.73901 7.21014 7.26685 7.28639 7.49201 7.77367 7.92333 8.05697 8.15338 8.51024 9.02305 9.58787 11.06461 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.031497 B = 0.001856 C = 0.001809 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 888.753741 B =15080.366637 C =15470.862067 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.529 5.529 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.281 1.281 10 H -0.287 1.287 11 H -0.272 1.272 12 C 0.028 3.972 13 C 0.116 3.884 14 H 0.107 0.893 15 O -0.538 6.538 16 C 0.027 3.973 17 O -0.301 6.301 18 C 0.137 3.863 19 C -0.205 4.205 20 C -0.078 4.078 21 C -0.145 4.145 22 C -0.046 4.046 23 C -0.071 4.071 24 C 0.477 3.523 25 O -0.502 6.502 26 O -0.520 6.520 27 C -0.136 4.136 28 H 0.010 0.990 29 H 0.077 0.923 30 H 0.048 0.952 31 H -0.010 1.010 32 H 0.029 0.971 33 H 0.261 0.739 34 H 0.032 0.968 35 H 0.074 0.926 36 H 0.370 0.630 37 H 0.070 0.930 38 H 0.066 0.934 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.122 0.878 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.411 0.589 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.693 -26.496 14.542 30.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 N -0.253 5.253 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.197 1.197 12 C -0.102 4.102 13 C 0.056 3.944 14 H 0.124 0.876 15 O -0.342 6.342 16 C -0.049 4.049 17 O -0.214 6.214 18 C 0.091 3.909 19 C -0.223 4.223 20 C -0.096 4.096 21 C -0.164 4.164 22 C -0.047 4.047 23 C -0.108 4.108 24 C 0.318 3.682 25 O -0.388 6.388 26 O -0.333 6.333 27 C -0.155 4.155 28 H 0.028 0.972 29 H 0.095 0.905 30 H 0.066 0.934 31 H 0.008 0.992 32 H 0.047 0.953 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.217 0.783 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.270 0.730 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -2.199 -26.304 13.833 29.801 hybrid contribution 0.812 1.006 0.143 1.301 sum -1.387 -25.298 13.976 28.935 Atomic orbital electron populations 1.22291 0.88811 0.99730 1.00625 1.62004 1.07000 1.17561 1.38759 1.19758 0.95330 0.81342 0.96776 1.21161 1.34773 0.96857 1.01680 0.91724 1.24999 0.95285 0.97352 0.97083 1.69959 1.38428 1.11444 1.34152 0.86473 0.77953 0.79191 0.83680 1.20755 1.21262 1.19696 1.22627 1.00862 0.92748 0.93915 1.21968 0.98829 0.90645 0.83004 0.87578 1.86645 1.23111 1.83770 1.40633 1.23742 0.99876 0.80303 1.01000 1.86163 1.73906 1.20930 1.40439 1.18992 0.94080 0.90511 0.87329 1.21355 1.04175 1.01303 0.95497 1.20891 0.97849 0.93184 0.97653 1.20833 1.00795 0.96033 0.98706 1.18934 0.98340 0.92889 0.94501 1.20246 0.96907 0.90158 1.03489 1.23357 0.87650 0.80690 0.76489 1.90790 1.29673 1.72596 1.45762 1.84514 1.51537 1.21956 1.75250 1.20208 1.04632 0.90986 0.99655 0.97153 0.90461 0.93370 0.99175 0.95271 0.92935 0.94990 0.90760 0.78319 0.91189 0.91540 0.85259 0.85590 0.86048 0.86428 0.86400 0.72954 0.85176 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.67 9.14 60.07 0.55 1.21 16 2 N -0.53 -11.36 4.70 -244.37 -1.15 -12.51 16 3 C 0.19 4.99 4.72 -4.98 -0.02 4.97 16 4 C -0.51 -14.28 8.46 -34.44 -0.29 -14.58 16 5 H 0.06 1.82 7.12 -52.49 -0.37 1.45 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.44 16 7 N -0.90 -26.69 13.29 55.43 0.74 -25.95 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.51 7.11 56.52 0.40 -6.11 16 12 C 0.03 0.47 4.59 -3.83 -0.02 0.45 16 13 C 0.12 1.70 3.20 -26.74 -0.09 1.61 16 14 H 0.11 1.63 6.34 -51.92 -0.33 1.31 16 15 O -0.54 -8.73 13.25 -40.08 -0.53 -9.26 16 16 C 0.03 0.32 4.37 37.16 0.16 0.49 16 17 O -0.30 -4.09 10.10 -24.28 -0.25 -4.34 16 18 C 0.14 1.67 6.69 -39.22 -0.26 1.41 16 19 C -0.20 -2.18 9.04 -39.43 -0.36 -2.53 16 20 C -0.08 -0.71 10.04 -39.60 -0.40 -1.11 16 21 C -0.15 -1.27 9.70 -39.56 -0.38 -1.65 16 22 C -0.05 -0.42 4.37 -104.64 -0.46 -0.88 16 23 C -0.07 -0.42 5.94 -29.03 -0.17 -0.59 16 24 C 0.48 3.77 8.32 36.00 0.30 4.07 16 25 O -0.50 -6.07 16.79 -18.75 -0.31 -6.38 16 26 O -0.52 -2.82 13.42 -39.24 -0.53 -3.34 16 27 C -0.14 -1.50 9.64 -39.43 -0.38 -1.88 16 28 H 0.01 0.19 8.14 -51.93 -0.42 -0.23 16 29 H 0.08 1.63 6.76 -51.93 -0.35 1.28 16 30 H 0.05 0.83 6.37 -51.93 -0.33 0.50 16 31 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 32 H 0.03 0.80 7.93 -51.93 -0.41 0.39 16 33 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 34 H 0.03 0.51 8.12 -51.93 -0.42 0.09 16 35 H 0.07 1.21 7.93 -51.92 -0.41 0.80 16 36 H 0.37 4.81 9.05 45.56 0.41 5.22 16 37 H 0.07 0.74 7.68 -51.93 -0.40 0.34 16 38 H 0.07 0.71 7.65 -51.93 -0.40 0.32 16 39 H 0.13 1.21 6.30 -52.48 -0.33 0.88 16 40 H 0.13 0.86 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.35 16 42 H 0.12 0.39 8.09 -51.93 -0.42 -0.02 16 43 H 0.12 0.48 8.08 -51.93 -0.42 0.06 16 44 H 0.41 0.74 9.10 45.56 0.41 1.15 16 45 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 381.37 15.07 5.75 5.75 Total: -1.00 -36.00 381.37 -8.24 -44.23 By element: Atomic # 1 Polarization: 7.65 SS G_CDS: -5.02 Total: 2.64 kcal Atomic # 6 Polarization: -5.65 SS G_CDS: -1.91 Total: -7.56 kcal Atomic # 7 Polarization: -38.05 SS G_CDS: -0.41 Total: -38.46 kcal Atomic # 8 Polarization: -21.70 SS G_CDS: -1.62 Total: -23.32 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.00 -8.24 -44.23 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598469319.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.697 kcal (2) G-P(sol) polarization free energy of solvation -35.996 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.693 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds