Wall clock time and date at job start Tue Mar 31 2020 13:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99790 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00051 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47235 * 89.99847 * 8 6 4 10 10 H 1.48498 * 109.47219 * 209.99790 * 8 6 4 11 11 H 1.48501 * 109.46836 * 329.99929 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.52997 * 109.47254 * 293.95367 * 12 2 1 14 14 H 1.08998 * 109.47533 * 59.99633 * 13 12 2 15 15 O 1.42905 * 109.47264 * 299.99921 * 13 12 2 16 16 C 1.52992 * 109.47482 * 179.97438 * 13 12 2 17 17 O 1.42905 * 109.47641 * 184.99974 * 16 13 12 18 18 C 1.35901 * 117.00161 * 180.02562 * 17 16 13 19 19 C 1.38757 * 120.05606 * 359.72257 * 18 17 16 20 20 C 1.38121 * 119.94249 * 179.70521 * 19 18 17 21 21 C 1.38292 * 120.05464 * 0.59374 * 20 19 18 22 22 C 1.38245 * 120.10990 * 359.68472 * 21 20 19 23 23 C 1.50701 * 119.96782 * 179.97438 * 22 21 20 24 24 C 1.50705 * 109.47100 * 270.01702 * 23 22 21 25 25 O 1.20825 * 119.99890 * 0.02562 * 24 23 22 26 26 O 1.34231 * 119.99640 * 180.02562 * 24 23 22 27 27 C 1.38163 * 120.06016 * 0.02562 * 22 21 20 28 28 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 29 29 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 30 30 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 31 31 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 32 32 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 33 33 H 0.96994 * 119.99598 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 35 35 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 36 36 H 0.96696 * 114.00036 * 299.99911 * 15 13 12 37 37 H 1.09001 * 109.47563 * 305.00337 * 16 13 12 38 38 H 1.09004 * 109.47313 * 64.99993 * 16 13 12 39 39 H 1.08003 * 120.02611 * 359.97438 * 19 18 17 40 40 H 1.07994 * 119.97137 * 180.29589 * 20 19 18 41 41 H 1.07994 * 119.94181 * 179.70225 * 21 20 19 42 42 H 1.09000 * 109.47336 * 30.02200 * 23 22 21 43 43 H 1.08999 * 109.46768 * 150.02072 * 23 22 21 44 44 H 0.96696 * 116.99291 * 180.02562 * 26 24 23 45 45 H 1.07993 * 120.03385 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 2.7120 4.0019 0.6148 8 14 1.5829 4.1870 3.1381 9 1 2.6603 3.9509 4.1324 10 1 1.4300 5.6465 2.9111 11 1 0.3055 3.6292 3.6504 12 6 1.9955 -0.7660 -1.1375 13 6 1.6316 -2.2426 -0.9702 14 1 0.5473 -2.3476 -0.9321 15 8 2.2010 -2.7392 0.2428 16 6 2.1794 -3.0404 -2.1552 17 8 1.7412 -4.3972 -2.0595 18 6 2.1436 -5.2463 -3.0413 19 6 2.9391 -4.7817 -4.0789 20 6 3.3518 -5.6481 -5.0724 21 6 2.9626 -6.9747 -5.0400 22 6 2.1653 -7.4387 -4.0104 23 6 1.7426 -8.8849 -3.9786 24 6 0.4413 -9.0443 -4.7218 25 8 -0.0883 -8.0824 -5.2259 26 8 -0.1293 -10.2550 -4.8236 27 6 1.7548 -6.5775 -3.0110 28 1 -0.3632 -1.0253 0.0709 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4511 -0.9233 31 1 3.0797 1.3445 -0.1083 32 1 1.5611 1.9273 -0.8310 33 1 2.9859 4.9182 0.7765 34 1 1.5612 -0.3873 -2.0628 35 1 3.0798 -0.6612 -1.1755 36 1 3.1653 -2.6771 0.2789 37 1 1.8145 -2.6056 -3.0858 38 1 3.2688 -3.0087 -2.1421 39 1 3.2389 -3.7446 -4.1074 40 1 3.9749 -5.2881 -5.8776 41 1 3.2824 -7.6494 -5.8203 42 1 2.5092 -9.4980 -4.4525 43 1 1.6116 -9.2024 -2.9442 44 1 -0.9634 -10.3076 -5.3101 45 1 1.1323 -6.9405 -2.2067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001598469320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:37 Heat of formation + Delta-G solvation = -150.096126 kcal Electronic energy + Delta-G solvation = -26244.402405 eV Core-core repulsion = 22227.373403 eV Total energy + Delta-G solvation = -4017.029001 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.86939 -40.15843 -38.41217 -37.27346 -36.44198 -35.40228 -33.12793 -32.55436 -31.15718 -29.79116 -28.39946 -27.27894 -26.42625 -24.27072 -23.13124 -22.64242 -21.58912 -20.80825 -20.22680 -18.51570 -17.96076 -16.94734 -16.86740 -16.55214 -16.49555 -16.26710 -15.99953 -15.35086 -14.98746 -14.78433 -14.57353 -14.25212 -13.76601 -13.64115 -13.56496 -13.41734 -13.17662 -12.67842 -12.60091 -12.42660 -11.94336 -11.92863 -11.86504 -11.44003 -11.33743 -11.15177 -11.05370 -10.95840 -10.91216 -10.78336 -10.65055 -10.31737 -10.03307 -9.71375 -9.18582 -9.16781 -8.45008 -8.38048 -7.26019 -6.04461 -4.05459 0.94246 1.22876 1.81422 2.64791 2.97159 3.32345 3.38044 3.42326 3.57290 4.12867 4.39289 4.46423 4.56146 4.64504 4.68906 4.83719 4.89728 4.95375 4.96715 5.03118 5.08134 5.22362 5.30595 5.31650 5.38514 5.45626 5.54341 5.74065 5.95983 6.03956 6.09214 6.13889 6.15922 6.22296 6.23290 6.32484 6.49255 6.75543 7.21307 7.27053 7.29211 7.48416 7.77491 7.93112 8.06096 8.15766 8.51381 9.02461 9.58856 11.06521 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.032153 B = 0.001852 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.635971 B =15112.028183 C =15491.331344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.528 5.528 3 C 0.193 3.807 4 C -0.506 4.506 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.900 3.100 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.273 1.273 12 C 0.027 3.973 13 C 0.116 3.884 14 H 0.105 0.895 15 O -0.537 6.537 16 C 0.027 3.973 17 O -0.301 6.301 18 C 0.137 3.863 19 C -0.205 4.205 20 C -0.078 4.078 21 C -0.145 4.145 22 C -0.046 4.046 23 C -0.071 4.071 24 C 0.477 3.523 25 O -0.502 6.502 26 O -0.520 6.520 27 C -0.136 4.136 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.010 0.990 31 H 0.029 0.971 32 H -0.010 1.010 33 H 0.261 0.739 34 H 0.032 0.968 35 H 0.073 0.927 36 H 0.370 0.630 37 H 0.070 0.930 38 H 0.067 0.933 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.121 0.879 42 H 0.118 0.882 43 H 0.118 0.882 44 H 0.411 0.589 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.370 -27.013 -13.387 30.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.252 5.252 3 C 0.068 3.932 4 C -0.545 4.545 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.728 3.272 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.198 1.198 12 C -0.102 4.102 13 C 0.056 3.944 14 H 0.123 0.877 15 O -0.340 6.340 16 C -0.049 4.049 17 O -0.214 6.214 18 C 0.091 3.909 19 C -0.223 4.223 20 C -0.096 4.096 21 C -0.164 4.164 22 C -0.047 4.047 23 C -0.108 4.108 24 C 0.318 3.682 25 O -0.389 6.389 26 O -0.332 6.332 27 C -0.155 4.155 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.028 0.972 31 H 0.047 0.953 32 H 0.008 0.992 33 H 0.071 0.929 34 H 0.050 0.950 35 H 0.092 0.908 36 H 0.217 0.783 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.147 0.853 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.136 0.864 43 H 0.136 0.864 44 H 0.270 0.730 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 0.080 -26.889 -12.589 29.690 hybrid contribution -0.268 1.315 -0.751 1.538 sum -0.188 -25.574 -13.340 28.845 Atomic orbital electron populations 1.22282 0.88763 0.99779 1.00579 1.62002 1.07053 1.17495 1.38677 1.19761 0.95299 0.81390 0.96780 1.21162 1.34804 0.96855 1.01638 0.91720 1.24999 0.95312 0.97343 0.97065 1.69957 1.38483 1.11472 1.34071 0.86468 0.78914 0.78333 0.83523 1.20603 1.21357 1.19825 1.22620 1.00812 0.92789 0.94006 1.21940 0.99358 0.90765 0.82331 0.87738 1.86634 1.25107 1.84808 1.37483 1.23738 0.99818 0.80208 1.01136 1.86164 1.70416 1.20070 1.44796 1.18996 0.93594 0.90299 0.88017 1.21355 1.03201 1.01081 0.96688 1.20890 0.98128 0.92997 0.97559 1.20832 1.00813 0.96193 0.98533 1.18932 0.97573 0.93167 0.94991 1.20250 0.92540 0.95304 1.02718 1.23368 0.86713 0.80128 0.77950 1.90786 1.63403 1.40312 1.44389 1.84518 1.42067 1.34405 1.72246 1.20207 1.03589 0.90805 1.00885 0.93346 0.90486 0.97186 0.95299 0.99178 0.92938 0.94958 0.90822 0.78309 0.91214 0.91503 0.85253 0.85590 0.86050 0.86413 0.86377 0.72973 0.85181 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.14 60.07 0.55 1.23 16 2 N -0.53 -11.33 4.62 -244.37 -1.13 -12.46 16 3 C 0.19 4.99 4.72 -4.98 -0.02 4.96 16 4 C -0.51 -14.27 8.46 -34.44 -0.29 -14.56 16 5 H 0.06 1.82 7.12 -52.48 -0.37 1.45 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.68 13.29 55.43 0.74 -25.94 16 8 Si 0.90 21.75 29.54 -169.99 -5.02 16.73 16 9 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 10 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 11 H -0.27 -6.50 7.11 56.52 0.40 -6.09 16 12 C 0.03 0.46 4.62 -3.83 -0.02 0.44 16 13 C 0.12 1.70 3.12 -26.74 -0.08 1.62 16 14 H 0.10 1.62 6.55 -51.93 -0.34 1.28 16 15 O -0.54 -8.57 13.17 -40.06 -0.53 -9.10 16 16 C 0.03 0.32 4.38 37.15 0.16 0.49 16 17 O -0.30 -4.09 10.10 -24.25 -0.25 -4.34 16 18 C 0.14 1.67 6.69 -39.21 -0.26 1.41 16 19 C -0.20 -2.18 9.04 -39.43 -0.36 -2.53 16 20 C -0.08 -0.72 10.04 -39.60 -0.40 -1.11 16 21 C -0.15 -1.27 9.70 -39.56 -0.38 -1.66 16 22 C -0.05 -0.42 4.37 -104.65 -0.46 -0.88 16 23 C -0.07 -0.42 5.94 -29.03 -0.17 -0.59 16 24 C 0.48 3.75 8.32 36.01 0.30 4.05 16 25 O -0.50 -6.03 16.79 -18.75 -0.31 -6.34 16 26 O -0.52 -2.79 13.42 -39.26 -0.53 -3.32 16 27 C -0.14 -1.50 9.64 -39.43 -0.38 -1.88 16 28 H 0.05 0.85 6.47 -51.93 -0.34 0.51 16 29 H 0.08 1.65 6.76 -51.93 -0.35 1.30 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 32 H -0.01 -0.26 8.12 -51.93 -0.42 -0.69 16 33 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.03 0.53 8.12 -51.93 -0.42 0.10 16 35 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 36 H 0.37 4.72 9.05 45.56 0.41 5.13 16 37 H 0.07 0.76 7.65 -51.93 -0.40 0.36 16 38 H 0.07 0.70 7.67 -51.93 -0.40 0.30 16 39 H 0.13 1.21 6.30 -52.48 -0.33 0.88 16 40 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 41 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 42 H 0.12 0.40 8.08 -51.93 -0.42 -0.02 16 43 H 0.12 0.49 8.08 -51.93 -0.42 0.07 16 44 H 0.41 0.71 9.10 45.56 0.41 1.13 16 45 H 0.13 1.32 8.06 -52.49 -0.42 0.89 16 LS Contribution 381.46 15.07 5.75 5.75 Total: -1.00 -35.85 381.46 -8.23 -44.07 By element: Atomic # 1 Polarization: 7.55 SS G_CDS: -5.03 Total: 2.51 kcal Atomic # 6 Polarization: -5.66 SS G_CDS: -1.91 Total: -7.57 kcal Atomic # 7 Polarization: -38.00 SS G_CDS: -0.39 Total: -38.40 kcal Atomic # 8 Polarization: -21.48 SS G_CDS: -1.61 Total: -23.09 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.85 -8.23 -44.07 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598469320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.026 kcal (2) G-P(sol) polarization free energy of solvation -35.845 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.871 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.071 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds