Wall clock time and date at job start Tue Mar 31 2020 13:50:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46901 * 111.00040 * 2 1 4 4 C 1.50696 * 109.47399 * 66.04221 * 3 2 1 5 5 H 1.08005 * 119.99725 * 0.02562 * 4 3 2 6 6 C 1.37878 * 120.00189 * 180.02562 * 4 3 2 7 7 N 1.31513 * 119.99790 * 359.97438 * 6 4 3 8 8 Si 1.86801 * 120.00051 * 180.02562 * 6 4 3 9 9 H 1.48496 * 109.47235 * 89.99847 * 8 6 4 10 10 H 1.48498 * 109.47219 * 209.99790 * 8 6 4 11 11 H 1.48501 * 109.46836 * 329.99929 * 8 6 4 12 12 C 1.46899 * 111.00255 * 236.04264 * 2 1 3 13 13 C 1.52997 * 109.47254 * 293.95367 * 12 2 1 14 14 H 1.08998 * 109.47533 * 59.99633 * 13 12 2 15 15 O 1.42905 * 109.47264 * 299.99921 * 13 12 2 16 16 C 1.52992 * 109.47482 * 179.97438 * 13 12 2 17 17 O 1.42905 * 109.47641 * 184.99974 * 16 13 12 18 18 C 1.35901 * 117.00161 * 180.02562 * 17 16 13 19 19 C 1.38757 * 120.05606 * 359.72257 * 18 17 16 20 20 C 1.38121 * 119.94249 * 179.70521 * 19 18 17 21 21 C 1.38292 * 120.05464 * 0.59374 * 20 19 18 22 22 C 1.38245 * 120.10990 * 359.68472 * 21 20 19 23 23 C 1.50701 * 119.96782 * 179.97438 * 22 21 20 24 24 C 1.50705 * 109.47100 * 270.01702 * 23 22 21 25 25 O 1.20825 * 119.99890 * 0.02562 * 24 23 22 26 26 O 1.34231 * 119.99640 * 180.02562 * 24 23 22 27 27 C 1.38163 * 120.06016 * 0.02562 * 22 21 20 28 28 H 1.09005 * 109.46528 * 183.95480 * 1 2 3 29 29 H 1.09000 * 109.46785 * 303.95569 * 1 2 3 30 30 H 1.08997 * 109.47044 * 63.96124 * 1 2 3 31 31 H 1.08998 * 109.47407 * 186.04713 * 3 2 1 32 32 H 1.09007 * 109.46608 * 306.04149 * 3 2 1 33 33 H 0.96994 * 119.99598 * 179.97438 * 7 6 4 34 34 H 1.09002 * 109.47043 * 53.95437 * 12 2 1 35 35 H 1.09001 * 109.47354 * 173.95499 * 12 2 1 36 36 H 0.96696 * 114.00036 * 299.99911 * 15 13 12 37 37 H 1.09001 * 109.47563 * 305.00337 * 16 13 12 38 38 H 1.09004 * 109.47313 * 64.99993 * 16 13 12 39 39 H 1.08003 * 120.02611 * 359.97438 * 19 18 17 40 40 H 1.07994 * 119.97137 * 180.29589 * 20 19 18 41 41 H 1.07994 * 119.94181 * 179.70225 * 21 20 19 42 42 H 1.09000 * 109.47336 * 30.02200 * 23 22 21 43 43 H 1.08999 * 109.46768 * 150.02072 * 23 22 21 44 44 H 0.96696 * 116.99291 * 180.02562 * 26 24 23 45 45 H 1.07993 * 120.03385 * 180.02562 * 27 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0472 1.2983 5 1 1.0745 1.5113 2.0487 6 6 2.0268 3.3496 1.5284 7 7 2.7120 4.0019 0.6148 8 14 1.5829 4.1870 3.1381 9 1 2.6603 3.9509 4.1324 10 1 1.4300 5.6465 2.9111 11 1 0.3055 3.6292 3.6504 12 6 1.9955 -0.7660 -1.1375 13 6 1.6316 -2.2426 -0.9702 14 1 0.5473 -2.3476 -0.9321 15 8 2.2010 -2.7392 0.2428 16 6 2.1794 -3.0404 -2.1552 17 8 1.7412 -4.3972 -2.0595 18 6 2.1436 -5.2463 -3.0413 19 6 2.9391 -4.7817 -4.0789 20 6 3.3518 -5.6481 -5.0724 21 6 2.9626 -6.9747 -5.0400 22 6 2.1653 -7.4387 -4.0104 23 6 1.7426 -8.8849 -3.9786 24 6 0.4413 -9.0443 -4.7218 25 8 -0.0883 -8.0824 -5.2259 26 8 -0.1293 -10.2550 -4.8236 27 6 1.7548 -6.5775 -3.0110 28 1 -0.3632 -1.0253 0.0709 29 1 -0.3633 0.5740 0.8524 30 1 -0.3633 0.4511 -0.9233 31 1 3.0797 1.3445 -0.1083 32 1 1.5611 1.9273 -0.8310 33 1 2.9859 4.9182 0.7765 34 1 1.5612 -0.3873 -2.0628 35 1 3.0798 -0.6612 -1.1755 36 1 3.1653 -2.6771 0.2789 37 1 1.8145 -2.6056 -3.0858 38 1 3.2688 -3.0087 -2.1421 39 1 3.2389 -3.7446 -4.1074 40 1 3.9749 -5.2881 -5.8776 41 1 3.2824 -7.6494 -5.8203 42 1 2.5092 -9.4980 -4.4525 43 1 1.6116 -9.2024 -2.9442 44 1 -0.9634 -10.3076 -5.3101 45 1 1.1323 -6.9405 -2.2067 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001598469320.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:36 Heat of formation + Delta-G solvation = -177.537574 kcal Electronic energy + Delta-G solvation = -26245.592355 eV Core-core repulsion = 22227.373403 eV Total energy + Delta-G solvation = -4018.218952 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.71 seconds Orbital eigenvalues (eV) -41.53481 -40.93204 -39.50797 -38.37110 -37.06207 -36.86707 -34.63423 -33.75625 -32.19660 -30.85971 -29.19100 -29.01013 -27.83718 -25.87110 -23.97350 -23.41492 -22.90596 -21.86949 -21.48838 -19.09318 -18.81522 -18.51118 -17.84377 -17.59702 -17.40296 -17.14507 -16.81520 -16.75520 -16.25843 -16.12230 -15.86883 -15.36082 -15.10990 -15.00368 -14.35798 -14.33262 -14.16824 -13.92005 -13.72345 -13.35075 -13.23058 -13.12162 -12.84713 -12.63821 -12.58093 -12.54451 -12.47767 -12.42179 -12.11041 -11.94827 -11.93416 -11.63653 -11.60532 -11.40066 -10.88831 -10.62183 -9.87722 -9.17161 -9.00694 -8.21629 -6.31063 0.23991 0.47999 1.24782 1.41093 1.42358 1.53520 2.00655 2.20260 2.40578 2.88668 3.10840 3.23304 3.52162 3.58668 3.79006 3.84790 3.96925 4.01094 4.11812 4.23370 4.27485 4.30755 4.33211 4.48719 4.49387 4.53171 4.62338 4.66662 4.69300 4.77395 4.96888 5.05456 5.05815 5.15926 5.28689 5.32055 5.44922 5.53579 5.63852 5.65278 5.79852 6.03206 6.28010 6.41717 6.59782 6.84308 6.89402 7.01864 7.38458 8.89236 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.032153 B = 0.001852 C = 0.001807 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.635971 B =15112.028183 C =15491.331344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.539 5.539 3 C 0.207 3.793 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.933 5.933 8 Si 0.969 3.031 9 H -0.273 1.273 10 H -0.281 1.281 11 H -0.266 1.266 12 C 0.028 3.972 13 C 0.128 3.872 14 H 0.095 0.905 15 O -0.556 6.556 16 C 0.035 3.965 17 O -0.323 6.323 18 C 0.109 3.891 19 C -0.216 4.216 20 C -0.084 4.084 21 C -0.148 4.148 22 C -0.048 4.048 23 C -0.070 4.070 24 C 0.483 3.517 25 O -0.552 6.552 26 O -0.512 6.512 27 C -0.155 4.155 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.014 0.986 31 H 0.009 0.991 32 H -0.036 1.036 33 H 0.265 0.735 34 H 0.041 0.959 35 H 0.079 0.921 36 H 0.383 0.617 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.137 0.863 40 H 0.149 0.851 41 H 0.148 0.852 42 H 0.151 0.849 43 H 0.137 0.863 44 H 0.427 0.573 45 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.736 -28.903 -13.793 32.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.263 5.263 3 C 0.081 3.919 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.794 3.206 9 H -0.198 1.198 10 H -0.207 1.207 11 H -0.191 1.191 12 C -0.101 4.101 13 C 0.068 3.932 14 H 0.113 0.887 15 O -0.362 6.362 16 C -0.040 4.040 17 O -0.237 6.237 18 C 0.064 3.936 19 C -0.235 4.235 20 C -0.101 4.101 21 C -0.166 4.166 22 C -0.049 4.049 23 C -0.107 4.107 24 C 0.327 3.673 25 O -0.442 6.442 26 O -0.326 6.326 27 C -0.174 4.174 28 H 0.091 0.909 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.027 0.973 32 H -0.018 1.018 33 H 0.073 0.927 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.232 0.768 37 H 0.099 0.901 38 H 0.102 0.898 39 H 0.155 0.845 40 H 0.167 0.833 41 H 0.166 0.834 42 H 0.168 0.832 43 H 0.155 0.845 44 H 0.288 0.712 45 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 0.442 -28.834 -13.003 31.633 hybrid contribution -0.385 1.754 -0.707 1.930 sum 0.057 -27.080 -13.710 30.353 Atomic orbital electron populations 1.22246 0.87863 1.01010 0.99881 1.61887 1.07992 1.15114 1.41355 1.19414 0.93884 0.83562 0.95009 1.21466 1.34891 0.97489 1.02416 0.92145 1.25893 0.95051 0.98022 1.00669 1.70070 1.39339 1.11907 1.36049 0.85386 0.78912 0.77252 0.79084 1.19841 1.20679 1.19082 1.22685 1.01070 0.93651 0.92670 1.21729 0.98908 0.89486 0.83119 0.88669 1.86590 1.26442 1.84861 1.38333 1.23561 1.00637 0.79814 1.00032 1.86093 1.71217 1.20508 1.45873 1.19269 0.95097 0.90655 0.88574 1.21539 1.03260 1.01873 0.96789 1.21255 0.98028 0.93199 0.97667 1.21251 1.00016 0.96536 0.98801 1.19271 0.96849 0.94538 0.94195 1.20390 0.92426 0.93801 1.04037 1.23676 0.86838 0.79877 0.76877 1.90777 1.64864 1.41875 1.46732 1.84486 1.42983 1.33020 1.72119 1.20438 1.04185 0.90948 1.01833 0.90855 0.92488 0.96761 0.97331 1.01840 0.92663 0.94097 0.90230 0.76849 0.90106 0.89832 0.84478 0.83281 0.83410 0.83181 0.84474 0.71155 0.85321 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.52 9.14 127.69 1.17 2.69 16 2 N -0.54 -23.37 4.62 -927.04 -4.28 -27.65 16 3 C 0.21 11.03 4.72 85.56 0.40 11.44 16 4 C -0.52 -30.06 8.46 25.60 0.22 -29.84 16 5 H 0.06 3.44 7.12 -2.91 -0.02 3.42 16 6 C 0.00 0.10 5.46 84.66 0.46 0.56 16 7 N -0.93 -56.04 13.29 21.45 0.28 -55.76 16 8 Si 0.97 44.71 29.54 68.60 2.03 46.73 16 9 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 11 H -0.27 -11.89 7.11 99.48 0.71 -11.19 16 12 C 0.03 0.94 4.62 86.30 0.40 1.33 16 13 C 0.13 3.66 3.12 30.59 0.10 3.76 16 14 H 0.10 2.90 6.55 -2.39 -0.02 2.89 16 15 O -0.56 -17.52 13.17 -144.37 -1.90 -19.42 16 16 C 0.04 0.82 4.38 71.98 0.31 1.14 16 17 O -0.32 -8.73 10.10 -87.82 -0.89 -9.62 16 18 C 0.11 2.64 6.69 22.51 0.15 2.79 16 19 C -0.22 -4.40 9.04 22.37 0.20 -4.20 16 20 C -0.08 -1.39 10.04 22.25 0.22 -1.16 16 21 C -0.15 -2.26 9.70 22.28 0.22 -2.04 16 22 C -0.05 -0.80 4.37 -19.88 -0.09 -0.89 16 23 C -0.07 -0.65 5.94 29.10 0.17 -0.48 16 24 C 0.48 6.77 8.32 71.24 0.59 7.36 16 25 O -0.55 -12.90 16.79 21.97 0.37 -12.53 16 26 O -0.51 -4.38 13.42 -51.42 -0.69 -5.07 16 27 C -0.16 -3.36 9.64 22.37 0.22 -3.15 16 28 H 0.07 2.53 6.47 -2.38 -0.02 2.52 16 29 H 0.06 2.47 6.76 -2.39 -0.02 2.45 16 30 H 0.01 0.54 8.14 -2.39 -0.02 0.52 16 31 H 0.01 0.48 7.93 -2.39 -0.02 0.47 16 32 H -0.04 -2.07 8.12 -2.38 -0.02 -2.09 16 33 H 0.26 14.92 8.31 -92.71 -0.77 14.15 16 34 H 0.04 1.31 8.12 -2.39 -0.02 1.29 16 35 H 0.08 2.54 7.93 -2.39 -0.02 2.52 16 36 H 0.38 9.57 9.05 -74.06 -0.67 8.90 16 37 H 0.08 1.68 7.65 -2.39 -0.02 1.66 16 38 H 0.08 1.64 7.67 -2.39 -0.02 1.62 16 39 H 0.14 2.42 6.30 -2.91 -0.02 2.40 16 40 H 0.15 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.15 1.40 8.06 -2.91 -0.02 1.37 16 42 H 0.15 0.43 8.08 -2.39 -0.02 0.41 16 43 H 0.14 0.78 8.08 -2.39 -0.02 0.76 16 44 H 0.43 0.70 9.10 -74.06 -0.67 0.03 16 45 H 0.13 2.64 8.06 -2.91 -0.02 2.62 16 Total: -1.00 -78.38 381.46 -0.66 -79.04 By element: Atomic # 1 Polarization: 15.29 SS G_CDS: -0.32 Total: 14.97 kcal Atomic # 6 Polarization: -15.43 SS G_CDS: 4.75 Total: -10.69 kcal Atomic # 7 Polarization: -79.41 SS G_CDS: -4.00 Total: -83.41 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -3.11 Total: -46.64 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.73 kcal Total: -78.38 -0.66 -79.04 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001598469320.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.501 kcal (2) G-P(sol) polarization free energy of solvation -78.378 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.879 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.036 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.71 seconds