Wall clock time and date at job start Tue Mar 31 2020 14:32:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38047 * 126.29116 * 2 1 4 4 C 1.47433 * 126.41141 * 0.03679 * 3 2 1 5 5 O 1.21602 * 120.00407 * 332.46686 * 4 3 2 6 6 N 1.34777 * 119.99597 * 152.46744 * 4 3 2 7 7 C 1.46503 * 120.00229 * 6.48970 * 6 4 3 8 8 C 1.50703 * 109.46803 * 96.55429 * 7 6 4 9 9 O 1.20831 * 120.00084 * 359.97438 * 8 7 6 10 10 O 1.34225 * 119.99973 * 180.02562 * 8 7 6 11 11 C 1.46504 * 119.99958 * 186.49678 * 6 4 3 12 12 C 1.52999 * 109.47390 * 89.99675 * 11 6 4 13 13 C 1.52998 * 109.46988 * 65.00120 * 12 11 6 14 14 C 1.52997 * 109.47095 * 185.00111 * 12 11 6 15 15 C 1.41284 * 107.17101 * 180.02562 * 3 2 1 16 16 N 1.30443 * 108.02457 * 359.73924 * 15 3 2 17 17 N 1.34262 * 126.29535 * 180.02562 * 2 1 3 18 18 C 1.46503 * 125.75181 * 359.96066 * 17 2 1 19 19 C 1.50701 * 109.47002 * 89.99411 * 18 17 2 20 20 H 1.07998 * 120.00354 * 0.02562 * 19 18 17 21 21 C 1.37882 * 119.99605 * 179.72135 * 19 18 17 22 22 N 1.31512 * 119.99873 * 180.27533 * 21 19 18 23 23 Si 1.86802 * 120.00063 * 0.28039 * 21 19 18 24 24 H 1.48502 * 109.47162 * 89.99484 * 23 21 19 25 25 H 1.48496 * 109.47209 * 209.99663 * 23 21 19 26 26 H 1.48502 * 109.47148 * 330.00064 * 23 21 19 27 27 H 1.09005 * 109.47002 * 269.99952 * 1 2 3 28 28 H 1.08993 * 109.47441 * 30.00300 * 1 2 3 29 29 H 1.09004 * 109.46717 * 150.00646 * 1 2 3 30 30 H 1.08993 * 109.47226 * 216.55157 * 7 6 4 31 31 H 1.09004 * 109.46929 * 336.55575 * 7 6 4 32 32 H 0.96697 * 117.00172 * 180.02562 * 10 8 7 33 33 H 1.08999 * 109.47079 * 210.00320 * 11 6 4 34 34 H 1.08998 * 109.46579 * 329.99582 * 11 6 4 35 35 H 1.09007 * 109.46826 * 305.00216 * 12 11 6 36 36 H 1.09003 * 109.46946 * 299.99725 * 13 12 11 37 37 H 1.08995 * 109.47301 * 59.99922 * 13 12 11 38 38 H 1.09002 * 109.46999 * 180.02562 * 13 12 11 39 39 H 1.09001 * 109.47011 * 59.99758 * 14 12 11 40 40 H 1.09002 * 109.46975 * 179.97438 * 14 12 11 41 41 H 1.08995 * 109.46989 * 299.99953 * 14 12 11 42 42 H 1.08007 * 125.98409 * 179.97438 * 15 3 2 43 43 H 1.09004 * 109.46566 * 329.99830 * 18 17 2 44 44 H 1.08993 * 109.46760 * 209.99825 * 18 17 2 45 45 H 0.96994 * 120.00003 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1127 0.0000 4 6 1.8857 2.5203 0.0008 5 8 0.8131 2.8235 -0.4854 6 7 2.6739 3.4712 0.5403 7 6 4.0239 3.1315 0.9969 8 6 5.0196 3.4730 -0.0815 9 8 4.6405 3.9507 -1.1246 10 8 6.3276 3.2456 0.1164 11 6 2.1806 4.8446 0.6703 12 6 1.4881 5.0118 2.0243 13 6 2.5143 4.8424 3.1463 14 6 0.8647 6.4064 2.1095 15 6 3.6590 0.6499 -0.0006 16 7 3.6340 -0.6543 0.0047 17 7 2.3018 -1.0821 -0.0005 18 6 1.8502 -2.4758 -0.0003 19 6 1.6944 -2.9536 -1.4211 20 1 1.9106 -2.2860 -2.2421 21 6 1.2819 -4.2449 -1.6728 22 7 1.1512 -4.6636 -2.9126 23 14 0.9087 -5.3998 -0.2527 24 1 -0.5237 -5.2791 0.1201 25 1 1.1975 -6.7976 -0.6624 26 1 1.7555 -5.0406 0.9131 27 1 -0.3633 0.0000 1.0277 28 1 -0.3634 0.8899 -0.5138 29 1 -0.3633 -0.8901 -0.5138 30 1 4.2559 3.6984 1.8984 31 1 4.0759 2.0648 1.2149 32 1 6.9281 3.4813 -0.6040 33 1 3.0178 5.5393 0.6020 34 1 1.4699 5.0525 -0.1295 35 1 0.7077 4.2579 2.1287 36 1 2.9584 3.8488 3.0856 37 1 3.2946 5.5962 3.0418 38 1 2.0208 4.9611 4.1110 39 1 0.1336 6.5270 1.3100 40 1 0.3709 6.5253 3.0739 41 1 1.6450 7.1601 2.0050 42 1 4.5448 1.2678 -0.0012 43 1 0.8918 -2.5471 0.5141 44 1 2.5851 -3.0957 0.5131 45 1 0.8607 -5.5719 -3.0897 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599974193.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:08 Heat of formation + Delta-G solvation = -67.263327 kcal Electronic energy + Delta-G solvation = -28417.794535 eV Core-core repulsion = 24436.650184 eV Total energy + Delta-G solvation = -3981.144350 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.70106 -41.44588 -40.31586 -37.72554 -37.04817 -35.97415 -35.19403 -33.95659 -32.92199 -30.38298 -29.67150 -28.56152 -27.92546 -26.81348 -24.99579 -23.58851 -22.68683 -21.78680 -20.82771 -19.89508 -19.30204 -19.20881 -18.37480 -17.71941 -17.46097 -17.23969 -16.80038 -16.35124 -16.00027 -15.75747 -15.66617 -15.15179 -14.79014 -14.70628 -14.52868 -14.18480 -13.98117 -13.91537 -13.73149 -13.63887 -13.39446 -13.11978 -13.05558 -12.86556 -12.64821 -12.57719 -12.53015 -12.21659 -12.12048 -11.93871 -11.85762 -11.83579 -11.66303 -11.56376 -10.92555 -10.90416 -10.33041 -9.91344 -9.53960 -8.43443 -6.56725 0.56538 0.99976 1.19606 1.34194 1.36045 1.45475 1.53566 1.71160 2.02916 2.25009 2.46910 2.88802 3.42554 3.59850 3.75924 3.87949 3.97621 4.01523 4.07359 4.17282 4.23191 4.28648 4.38269 4.47391 4.51970 4.61858 4.69020 4.74300 4.86667 4.91927 4.99713 5.04069 5.06156 5.08380 5.16409 5.29546 5.31571 5.42908 5.48525 5.57749 5.59086 5.78441 6.16784 6.18063 6.46909 6.64593 6.93796 7.07405 7.12191 8.73313 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.016916 B = 0.003487 C = 0.003164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1654.889113 B = 8028.704095 C = 8846.908521 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.154 3.846 3 C -0.332 4.332 4 C 0.610 3.390 5 O -0.567 6.567 6 N -0.587 5.587 7 C 0.089 3.911 8 C 0.457 3.543 9 O -0.540 6.540 10 O -0.504 6.504 11 C 0.123 3.877 12 C -0.109 4.109 13 C -0.150 4.150 14 C -0.141 4.141 15 C 0.060 3.940 16 N -0.319 5.319 17 N -0.331 5.331 18 C 0.233 3.767 19 C -0.558 4.558 20 H 0.022 0.978 21 C 0.022 3.978 22 N -0.937 5.937 23 Si 0.953 3.047 24 H -0.251 1.251 25 H -0.279 1.279 26 H -0.238 1.238 27 H 0.109 0.891 28 H 0.094 0.906 29 H 0.075 0.925 30 H 0.164 0.836 31 H 0.143 0.857 32 H 0.429 0.571 33 H 0.093 0.907 34 H 0.064 0.936 35 H 0.054 0.946 36 H 0.059 0.941 37 H 0.072 0.928 38 H 0.063 0.937 39 H 0.047 0.953 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.207 0.793 43 H 0.076 0.924 44 H 0.062 0.938 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.582 19.414 17.054 26.437 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.019 3.981 3 C -0.347 4.347 4 C 0.400 3.600 5 O -0.447 6.447 6 N -0.319 5.319 7 C -0.035 4.035 8 C 0.298 3.702 9 O -0.429 6.429 10 O -0.318 6.318 11 C 0.002 3.998 12 C -0.128 4.128 13 C -0.207 4.207 14 C -0.198 4.198 15 C -0.126 4.126 16 N -0.138 5.138 17 N -0.108 5.108 18 C 0.114 3.886 19 C -0.596 4.596 20 H 0.040 0.960 21 C -0.178 4.178 22 N -0.574 5.574 23 Si 0.773 3.227 24 H -0.175 1.175 25 H -0.204 1.204 26 H -0.161 1.161 27 H 0.127 0.873 28 H 0.112 0.888 29 H 0.094 0.906 30 H 0.181 0.819 31 H 0.161 0.839 32 H 0.292 0.708 33 H 0.111 0.889 34 H 0.082 0.918 35 H 0.072 0.928 36 H 0.078 0.922 37 H 0.091 0.909 38 H 0.082 0.918 39 H 0.066 0.934 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.223 0.777 43 H 0.094 0.906 44 H 0.079 0.921 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.306 18.220 16.706 25.282 hybrid contribution -0.080 0.040 -1.243 1.246 sum 5.226 18.260 15.463 24.492 Atomic orbital electron populations 1.20705 0.85321 1.04750 1.04932 1.21924 0.96084 0.86204 0.93927 1.19907 0.93272 0.93290 1.28209 1.17241 0.83245 0.83870 0.75602 1.90688 1.24719 1.82707 1.46578 1.47281 1.13017 1.09958 1.61609 1.22001 0.78889 1.07534 0.95119 1.24412 0.83340 0.74174 0.88265 1.90781 1.80695 1.42105 1.29356 1.84485 1.17739 1.78652 1.50907 1.21678 0.99615 0.80506 0.98048 1.21468 0.98289 0.98608 0.94481 1.21981 0.98870 1.02241 0.97645 1.21734 1.00840 0.95109 1.02155 1.24452 0.97113 0.91890 0.99152 1.77104 0.98329 1.13648 1.24756 1.48808 1.03196 1.07477 1.51366 1.19969 0.97155 0.74174 0.97316 1.21203 1.48539 0.98801 0.91011 0.95999 1.25879 0.93518 0.99241 0.99196 1.70036 1.46589 1.19002 1.21816 0.85655 0.80564 0.77573 0.78909 1.17499 1.20434 1.16115 0.87276 0.88769 0.90644 0.81884 0.83947 0.70825 0.88912 0.91751 0.92761 0.92238 0.90927 0.91764 0.93404 0.91465 0.91260 0.77652 0.90590 0.92056 0.91627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -3.39 9.63 71.24 0.69 -2.71 16 2 C 0.15 6.09 7.00 42.14 0.29 6.38 16 3 C -0.33 -12.03 5.72 -20.15 -0.12 -12.14 16 4 C 0.61 20.54 7.55 86.67 0.65 21.20 16 5 O -0.57 -22.44 14.74 -4.04 -0.06 -22.50 16 6 N -0.59 -14.38 1.81 -830.02 -1.50 -15.88 16 7 C 0.09 1.58 4.80 85.63 0.41 1.99 16 8 C 0.46 9.15 6.77 71.24 0.48 9.64 16 9 O -0.54 -15.58 17.13 21.95 0.38 -15.21 16 10 O -0.50 -6.73 13.42 -51.37 -0.69 -7.42 16 11 C 0.12 2.56 4.88 86.38 0.42 2.99 16 12 C -0.11 -1.80 3.13 -10.80 -0.03 -1.83 16 13 C -0.15 -1.70 8.23 71.98 0.59 -1.11 16 14 C -0.14 -1.87 9.19 71.98 0.66 -1.21 16 15 C 0.06 2.07 9.62 85.65 0.82 2.89 16 16 N -0.32 -13.32 12.50 -56.28 -0.70 -14.02 16 17 N -0.33 -14.45 3.56 -336.69 -1.20 -15.65 16 18 C 0.23 10.57 4.85 85.63 0.42 10.99 16 19 C -0.56 -31.48 9.94 25.60 0.25 -31.23 16 20 H 0.02 1.45 8.06 -2.91 -0.02 1.43 16 21 C 0.02 1.21 5.47 84.66 0.46 1.67 16 22 N -0.94 -56.79 13.96 21.45 0.30 -56.49 16 23 Si 0.95 39.64 27.47 68.60 1.88 41.53 16 24 H -0.25 -9.68 7.11 99.48 0.71 -8.97 16 25 H -0.28 -11.59 7.11 99.48 0.71 -10.88 16 26 H -0.24 -8.90 6.54 99.48 0.65 -8.25 16 27 H 0.11 2.95 8.14 -2.38 -0.02 2.93 16 28 H 0.09 3.35 6.42 -2.39 -0.02 3.33 16 29 H 0.07 2.75 7.70 -2.39 -0.02 2.73 16 30 H 0.16 1.57 5.71 -2.39 -0.01 1.55 16 31 H 0.14 2.66 4.08 -2.39 -0.01 2.65 16 32 H 0.43 2.72 9.10 -74.06 -0.67 2.05 16 33 H 0.09 1.55 8.07 -2.39 -0.02 1.53 16 34 H 0.06 1.69 7.34 -2.39 -0.02 1.67 16 35 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 36 H 0.06 0.68 5.76 -2.39 -0.01 0.67 16 37 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 38 H 0.06 0.66 8.14 -2.39 -0.02 0.64 16 39 H 0.05 0.74 8.14 -2.39 -0.02 0.72 16 40 H 0.07 0.77 8.14 -2.39 -0.02 0.75 16 41 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 42 H 0.21 5.50 4.46 -2.91 -0.01 5.49 16 43 H 0.08 3.02 7.06 -2.39 -0.02 3.00 16 44 H 0.06 2.70 7.19 -2.39 -0.02 2.69 16 45 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 Total: -1.00 -80.18 368.36 4.73 -75.45 By element: Atomic # 1 Polarization: 22.37 SS G_CDS: 0.31 Total: 22.68 kcal Atomic # 6 Polarization: 1.50 SS G_CDS: 6.01 Total: 7.51 kcal Atomic # 7 Polarization: -98.94 SS G_CDS: -3.10 Total: -102.04 kcal Atomic # 8 Polarization: -44.75 SS G_CDS: -0.37 Total: -45.13 kcal Atomic # 14 Polarization: 39.64 SS G_CDS: 1.88 Total: 41.53 kcal Total: -80.18 4.73 -75.45 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599974193.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.191 kcal (2) G-P(sol) polarization free energy of solvation -80.181 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.726 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds