Wall clock time and date at job start Tue Mar 31 2020 14:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38108 * 126.29784 * 2 1 4 4 C 1.47348 * 126.42253 * 359.96399 * 3 2 1 5 5 O 1.21625 * 120.00076 * 326.67472 * 4 3 2 6 6 N 1.34782 * 120.00168 * 146.67396 * 4 3 2 7 7 C 1.36979 * 120.00193 * 184.92897 * 6 4 3 8 8 H 1.08004 * 119.99803 * 222.23422 * 7 6 4 9 9 C 1.38971 * 120.00026 * 42.23416 * 7 6 4 10 10 N 1.31406 * 120.00086 * 28.34801 * 9 7 6 11 11 Si 1.86806 * 119.99968 * 208.34652 * 9 7 6 12 12 H 1.48492 * 109.46936 * 90.00065 * 11 9 7 13 13 H 1.48493 * 109.47115 * 210.00178 * 11 9 7 14 14 H 1.48502 * 109.46887 * 330.00079 * 11 9 7 15 15 C 1.46498 * 119.99471 * 4.93051 * 6 4 3 16 16 C 1.53000 * 109.47317 * 96.31324 * 15 6 4 17 17 C 1.50701 * 109.47245 * 179.97438 * 16 15 6 18 18 O 1.20828 * 119.99785 * 0.02562 * 17 16 15 19 19 O 1.34229 * 120.00217 * 179.97438 * 17 16 15 20 20 C 1.41329 * 107.15286 * 179.84828 * 3 2 1 21 21 N 1.30441 * 108.02717 * 0.41489 * 20 3 2 22 22 N 1.34292 * 126.29662 * 180.30680 * 2 1 3 23 23 C 1.46496 * 125.75125 * 0.02562 * 22 2 1 24 24 C 1.53002 * 109.47531 * 66.61583 * 23 22 2 25 25 C 1.52996 * 109.47118 * 186.62222 * 23 22 2 26 26 C 1.53006 * 109.47143 * 306.62068 * 23 22 2 27 27 H 1.08997 * 109.47244 * 265.14397 * 1 2 3 28 28 H 1.09001 * 109.47225 * 145.13976 * 1 2 3 29 29 H 1.09004 * 109.47218 * 25.14036 * 1 2 3 30 30 H 0.97007 * 120.00295 * 184.98321 * 10 9 7 31 31 H 1.09005 * 109.46713 * 216.30723 * 15 6 4 32 32 H 1.08994 * 109.47559 * 336.30900 * 15 6 4 33 33 H 1.08993 * 109.46924 * 299.99729 * 16 15 6 34 34 H 1.09005 * 109.46910 * 59.99767 * 16 15 6 35 35 H 0.96694 * 117.00458 * 180.02562 * 19 17 16 36 36 H 1.08003 * 125.98379 * 180.16116 * 20 3 2 37 37 H 1.09008 * 109.46445 * 65.08033 * 24 23 22 38 38 H 1.08990 * 109.47320 * 185.08175 * 24 23 22 39 39 H 1.08998 * 109.46960 * 305.08552 * 24 23 22 40 40 H 1.08996 * 109.47356 * 59.99703 * 25 23 22 41 41 H 1.09002 * 109.47251 * 179.97438 * 25 23 22 42 42 H 1.09002 * 109.47150 * 299.99319 * 25 23 22 43 43 H 1.08992 * 109.47280 * 59.99789 * 26 23 22 44 44 H 1.09002 * 109.47183 * 180.02562 * 26 23 22 45 45 H 1.09010 * 109.46890 * 299.99903 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1131 0.0000 4 6 1.8869 2.5201 -0.0007 5 8 0.8662 2.8391 -0.5801 6 7 2.6176 3.4535 0.6406 7 6 2.1601 4.7418 0.7262 8 1 2.8404 5.5674 0.5773 9 6 0.8208 4.9865 1.0047 10 7 0.1272 4.1204 1.7087 11 14 0.0064 6.5465 0.3781 12 1 -0.5754 6.2960 -0.9650 13 1 -1.0705 6.9537 1.3159 14 1 1.0178 7.6299 0.2853 15 6 3.9013 3.0902 1.2459 16 6 5.0364 3.4325 0.2789 17 6 6.3569 3.0593 0.9019 18 8 6.3869 2.5694 2.0060 19 8 7.4995 3.2703 0.2299 20 6 3.6597 0.6496 0.0036 21 7 3.6343 -0.6546 -0.0034 22 7 2.3020 -1.0823 -0.0058 23 6 1.8504 -2.4759 -0.0138 24 6 1.1490 -2.7773 -1.3398 25 6 3.0563 -3.4036 0.1478 26 6 0.8742 -2.7024 1.1424 27 1 -0.3633 -0.0870 1.0239 28 1 -0.3634 -0.8432 -0.5874 29 1 -0.3634 0.9303 -0.4366 30 1 -0.8242 4.2547 1.8420 31 1 4.0352 3.6454 2.1744 32 1 3.9138 2.0210 1.4570 33 1 4.9025 2.8774 -0.6495 34 1 5.0238 4.5019 0.0679 35 1 8.3215 3.0144 0.6703 36 1 4.5458 1.2671 0.0070 37 1 1.8679 -2.7037 -2.1559 38 1 0.7343 -3.7848 -1.3106 39 1 0.3455 -2.0580 -1.4974 40 1 3.5559 -3.1890 1.0924 41 1 2.7203 -4.4406 0.1423 42 1 3.7517 -3.2424 -0.6759 43 1 0.0152 -2.0415 1.0274 44 1 0.5386 -3.7395 1.1367 45 1 1.3739 -2.4877 2.0872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001599975791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:19 Heat of formation + Delta-G solvation = -35.886337 kcal Electronic energy + Delta-G solvation = -29062.214561 eV Core-core repulsion = 25082.430820 eV Total energy + Delta-G solvation = -3979.783742 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.15916 -40.02371 -38.12892 -36.52009 -36.00237 -34.61181 -32.37101 -31.88929 -30.11551 -29.83330 -27.56953 -27.46571 -26.87647 -25.06945 -23.89207 -22.21290 -21.27202 -20.57025 -19.26163 -18.33496 -17.87659 -16.81758 -16.46477 -15.98894 -15.70595 -15.25141 -15.01158 -14.71464 -14.43603 -14.12073 -14.01919 -13.68238 -13.45697 -12.92452 -12.79759 -12.62072 -12.45844 -12.39585 -12.25450 -12.15938 -11.93474 -11.73878 -11.68450 -11.41945 -11.37154 -11.30757 -11.26105 -10.94286 -10.81970 -10.64933 -10.47238 -10.32192 -10.15849 -10.11351 -8.82880 -8.67832 -8.15557 -7.80101 -7.23570 -6.15819 -3.83074 2.20504 2.43518 2.68189 2.95504 3.25298 3.37897 3.44276 3.49194 4.27673 4.43544 4.62706 4.67858 4.76754 5.02295 5.05391 5.21323 5.24902 5.28725 5.36077 5.43190 5.43790 5.46875 5.56990 5.62181 5.67912 5.70020 5.74881 5.88430 5.95843 5.96887 6.04943 6.11060 6.18913 6.22686 6.37338 6.46021 6.61359 6.69482 6.79979 7.02544 7.43875 7.64522 8.08710 8.11815 8.27458 9.05702 9.20232 9.64472 10.30450 10.92186 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009679 B = 0.005666 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.073837 B = 4940.782059 C = 7324.004542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.099 4.099 2 C 0.134 3.866 3 C -0.258 4.258 4 C 0.558 3.442 5 O -0.548 6.548 6 N -0.443 5.443 7 C -0.356 4.356 8 H 0.080 0.920 9 C 0.086 3.914 10 N -0.828 5.828 11 Si 0.901 3.099 12 H -0.276 1.276 13 H -0.290 1.290 14 H -0.274 1.274 15 C 0.107 3.893 16 C -0.137 4.137 17 C 0.480 3.520 18 O -0.514 6.514 19 O -0.521 6.521 20 C 0.058 3.942 21 N -0.308 5.308 22 N -0.359 5.359 23 C 0.181 3.819 24 C -0.166 4.166 25 C -0.139 4.139 26 C -0.169 4.169 27 H 0.077 0.923 28 H 0.066 0.934 29 H 0.108 0.892 30 H 0.264 0.736 31 H 0.076 0.924 32 H 0.078 0.922 33 H 0.104 0.896 34 H 0.115 0.885 35 H 0.404 0.596 36 H 0.182 0.818 37 H 0.064 0.936 38 H 0.075 0.925 39 H 0.070 0.930 40 H 0.066 0.934 41 H 0.068 0.932 42 H 0.068 0.932 43 H 0.074 0.926 44 H 0.076 0.924 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.667 -12.315 -2.990 13.882 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.004 3.996 3 C -0.273 4.273 4 C 0.347 3.653 5 O -0.428 6.428 6 N -0.164 5.164 7 C -0.482 4.482 8 H 0.098 0.902 9 C -0.125 4.125 10 N -0.461 5.461 11 Si 0.728 3.272 12 H -0.202 1.202 13 H -0.216 1.216 14 H -0.198 1.198 15 C -0.018 4.018 16 C -0.176 4.176 17 C 0.322 3.678 18 O -0.402 6.402 19 O -0.333 6.333 20 C -0.128 4.128 21 N -0.128 5.128 22 N -0.142 5.142 23 C 0.098 3.902 24 C -0.224 4.224 25 C -0.197 4.197 26 C -0.227 4.227 27 H 0.096 0.904 28 H 0.084 0.916 29 H 0.126 0.874 30 H 0.074 0.926 31 H 0.095 0.905 32 H 0.096 0.904 33 H 0.122 0.878 34 H 0.133 0.867 35 H 0.262 0.738 36 H 0.199 0.801 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.089 0.911 40 H 0.085 0.915 41 H 0.087 0.913 42 H 0.087 0.913 43 H 0.093 0.907 44 H 0.095 0.905 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.275 -13.378 -3.021 14.694 hybrid contribution -0.157 1.287 0.142 1.304 sum 5.118 -12.091 -2.880 13.441 Atomic orbital electron populations 1.20785 0.87121 1.04929 1.02890 1.21270 0.94495 0.86103 0.97705 1.20560 0.92024 0.95455 1.19253 1.16927 0.85284 0.82669 0.80465 1.90544 1.25596 1.80759 1.45869 1.43038 1.16633 1.09098 1.47627 1.18883 0.94805 0.81862 1.52634 0.90198 1.25092 0.97647 0.97577 0.92198 1.70008 1.08069 1.37858 1.30194 0.86396 0.79043 0.82403 0.79357 1.20158 1.21617 1.19841 1.21563 0.84197 1.01337 0.94709 1.22093 0.88047 1.05749 1.01740 1.23774 0.86127 0.74138 0.83778 1.90722 1.87797 1.40854 1.20801 1.84586 1.17645 1.79204 1.51847 1.24285 0.97701 0.91853 0.98973 1.76967 0.96593 1.13143 1.26048 1.48547 1.03791 1.04974 1.56887 1.20629 0.95419 0.77634 0.96490 1.22370 1.01343 1.02651 0.95997 1.21861 0.96512 0.97505 1.03819 1.22411 0.99623 1.03008 0.97693 0.90447 0.91594 0.87353 0.92576 0.90524 0.90407 0.87846 0.86720 0.73824 0.80121 0.91657 0.90570 0.91099 0.91492 0.91339 0.91264 0.90718 0.90517 0.91560 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.69 8.27 36.01 0.30 -1.39 16 2 C 0.13 2.56 6.49 -81.56 -0.53 2.03 16 3 C -0.26 -5.61 5.53 -105.06 -0.58 -6.19 16 4 C 0.56 14.21 6.79 -12.55 -0.09 14.12 16 5 O -0.55 -15.62 13.55 5.26 0.07 -15.55 16 6 N -0.44 -10.98 2.52 -116.05 -0.29 -11.27 16 7 C -0.36 -9.55 9.10 -14.98 -0.14 -9.69 16 8 H 0.08 2.04 7.97 -52.48 -0.42 1.62 16 9 C 0.09 2.38 4.04 -17.46 -0.07 2.31 16 10 N -0.83 -23.93 12.50 55.50 0.69 -23.24 16 11 Si 0.90 21.61 29.64 -169.99 -5.04 16.58 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 14 H -0.27 -6.27 7.11 56.52 0.40 -5.86 16 15 C 0.11 2.19 4.18 -4.04 -0.02 2.18 16 16 C -0.14 -2.24 5.14 -27.88 -0.14 -2.39 16 17 C 0.48 7.21 8.11 36.01 0.29 7.51 16 18 O -0.51 -9.15 16.74 -18.75 -0.31 -9.46 16 19 O -0.52 -6.12 13.42 -39.26 -0.53 -6.65 16 20 C 0.06 1.11 9.46 -16.97 -0.16 0.95 16 21 N -0.31 -5.63 11.54 30.87 0.36 -5.27 16 22 N -0.36 -6.01 3.43 -43.99 -0.15 -6.16 16 23 C 0.18 2.24 1.07 -131.82 -0.14 2.10 16 24 C -0.17 -1.74 8.58 37.16 0.32 -1.42 16 25 C -0.14 -1.53 7.99 37.16 0.30 -1.23 16 26 C -0.17 -1.83 8.38 37.16 0.31 -1.52 16 27 H 0.08 1.26 7.51 -51.93 -0.39 0.87 16 28 H 0.07 0.88 4.96 -51.93 -0.26 0.62 16 29 H 0.11 2.20 6.38 -51.93 -0.33 1.87 16 30 H 0.26 7.31 8.32 -40.82 -0.34 6.97 16 31 H 0.08 1.64 8.05 -51.93 -0.42 1.22 16 32 H 0.08 1.60 4.58 -51.93 -0.24 1.36 16 33 H 0.10 1.60 6.77 -51.93 -0.35 1.25 16 34 H 0.11 1.82 8.14 -51.93 -0.42 1.40 16 35 H 0.40 2.91 9.10 45.56 0.41 3.32 16 36 H 0.18 3.17 3.96 -52.48 -0.21 2.96 16 37 H 0.06 0.72 8.14 -51.92 -0.42 0.30 16 38 H 0.08 0.58 8.14 -51.93 -0.42 0.16 16 39 H 0.07 0.79 5.41 -51.93 -0.28 0.51 16 40 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 41 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 42 H 0.07 0.82 8.11 -51.93 -0.42 0.40 16 43 H 0.07 0.84 5.05 -51.93 -0.26 0.57 16 44 H 0.08 0.61 8.14 -51.93 -0.42 0.18 16 45 H 0.07 0.79 8.14 -51.92 -0.42 0.37 16 LS Contribution 360.99 15.07 5.44 5.44 Total: -1.00 -35.14 360.99 -5.37 -40.50 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.26 Total: 7.72 kcal Atomic # 6 Polarization: 7.71 SS G_CDS: -0.35 Total: 7.37 kcal Atomic # 7 Polarization: -46.54 SS G_CDS: 0.61 Total: -45.94 kcal Atomic # 8 Polarization: -30.89 SS G_CDS: -0.77 Total: -31.66 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.04 Total: 16.58 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -35.14 -5.37 -40.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599975791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.615 kcal (2) G-P(sol) polarization free energy of solvation -35.136 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.365 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.502 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds