Wall clock time and date at job start Tue Mar 31 2020 14:29:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38108 * 126.29784 * 2 1 4 4 C 1.47348 * 126.42253 * 359.96399 * 3 2 1 5 5 O 1.21625 * 120.00076 * 326.67472 * 4 3 2 6 6 N 1.34782 * 120.00168 * 146.67396 * 4 3 2 7 7 C 1.36979 * 120.00193 * 184.92897 * 6 4 3 8 8 H 1.08004 * 119.99803 * 222.23422 * 7 6 4 9 9 C 1.38971 * 120.00026 * 42.23416 * 7 6 4 10 10 N 1.31406 * 120.00086 * 28.34801 * 9 7 6 11 11 Si 1.86806 * 119.99968 * 208.34652 * 9 7 6 12 12 H 1.48492 * 109.46936 * 90.00065 * 11 9 7 13 13 H 1.48493 * 109.47115 * 210.00178 * 11 9 7 14 14 H 1.48502 * 109.46887 * 330.00079 * 11 9 7 15 15 C 1.46498 * 119.99471 * 4.93051 * 6 4 3 16 16 C 1.53000 * 109.47317 * 96.31324 * 15 6 4 17 17 C 1.50701 * 109.47245 * 179.97438 * 16 15 6 18 18 O 1.20828 * 119.99785 * 0.02562 * 17 16 15 19 19 O 1.34229 * 120.00217 * 179.97438 * 17 16 15 20 20 C 1.41329 * 107.15286 * 179.84828 * 3 2 1 21 21 N 1.30441 * 108.02717 * 0.41489 * 20 3 2 22 22 N 1.34292 * 126.29662 * 180.30680 * 2 1 3 23 23 C 1.46496 * 125.75125 * 0.02562 * 22 2 1 24 24 C 1.53002 * 109.47531 * 66.61583 * 23 22 2 25 25 C 1.52996 * 109.47118 * 186.62222 * 23 22 2 26 26 C 1.53006 * 109.47143 * 306.62068 * 23 22 2 27 27 H 1.08997 * 109.47244 * 265.14397 * 1 2 3 28 28 H 1.09001 * 109.47225 * 145.13976 * 1 2 3 29 29 H 1.09004 * 109.47218 * 25.14036 * 1 2 3 30 30 H 0.97007 * 120.00295 * 184.98321 * 10 9 7 31 31 H 1.09005 * 109.46713 * 216.30723 * 15 6 4 32 32 H 1.08994 * 109.47559 * 336.30900 * 15 6 4 33 33 H 1.08993 * 109.46924 * 299.99729 * 16 15 6 34 34 H 1.09005 * 109.46910 * 59.99767 * 16 15 6 35 35 H 0.96694 * 117.00458 * 180.02562 * 19 17 16 36 36 H 1.08003 * 125.98379 * 180.16116 * 20 3 2 37 37 H 1.09008 * 109.46445 * 65.08033 * 24 23 22 38 38 H 1.08990 * 109.47320 * 185.08175 * 24 23 22 39 39 H 1.08998 * 109.46960 * 305.08552 * 24 23 22 40 40 H 1.08996 * 109.47356 * 59.99703 * 25 23 22 41 41 H 1.09002 * 109.47251 * 179.97438 * 25 23 22 42 42 H 1.09002 * 109.47150 * 299.99319 * 25 23 22 43 43 H 1.08992 * 109.47280 * 59.99789 * 26 23 22 44 44 H 1.09002 * 109.47183 * 180.02562 * 26 23 22 45 45 H 1.09010 * 109.46890 * 299.99903 * 26 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1131 0.0000 4 6 1.8869 2.5201 -0.0007 5 8 0.8662 2.8391 -0.5801 6 7 2.6176 3.4535 0.6406 7 6 2.1601 4.7418 0.7262 8 1 2.8404 5.5674 0.5773 9 6 0.8208 4.9865 1.0047 10 7 0.1272 4.1204 1.7087 11 14 0.0064 6.5465 0.3781 12 1 -0.5754 6.2960 -0.9650 13 1 -1.0705 6.9537 1.3159 14 1 1.0178 7.6299 0.2853 15 6 3.9013 3.0902 1.2459 16 6 5.0364 3.4325 0.2789 17 6 6.3569 3.0593 0.9019 18 8 6.3869 2.5694 2.0060 19 8 7.4995 3.2703 0.2299 20 6 3.6597 0.6496 0.0036 21 7 3.6343 -0.6546 -0.0034 22 7 2.3020 -1.0823 -0.0058 23 6 1.8504 -2.4759 -0.0138 24 6 1.1490 -2.7773 -1.3398 25 6 3.0563 -3.4036 0.1478 26 6 0.8742 -2.7024 1.1424 27 1 -0.3633 -0.0870 1.0239 28 1 -0.3634 -0.8432 -0.5874 29 1 -0.3634 0.9303 -0.4366 30 1 -0.8242 4.2547 1.8420 31 1 4.0352 3.6454 2.1744 32 1 3.9138 2.0210 1.4570 33 1 4.9025 2.8774 -0.6495 34 1 5.0238 4.5019 0.0679 35 1 8.3215 3.0144 0.6703 36 1 4.5458 1.2671 0.0070 37 1 1.8679 -2.7037 -2.1559 38 1 0.7343 -3.7848 -1.3106 39 1 0.3455 -2.0580 -1.4974 40 1 3.5559 -3.1890 1.0924 41 1 2.7203 -4.4406 0.1423 42 1 3.7517 -3.2424 -0.6759 43 1 0.0152 -2.0415 1.0274 44 1 0.5386 -3.7395 1.1367 45 1 1.3739 -2.4877 2.0872 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599975791.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:19 Heat of formation + Delta-G solvation = -60.262840 kcal Electronic energy + Delta-G solvation = -29063.271606 eV Core-core repulsion = 25082.430820 eV Total energy + Delta-G solvation = -3980.840786 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.59554 -41.26227 -39.88047 -37.67908 -37.18567 -36.40600 -34.30205 -33.31426 -31.79576 -31.26029 -28.70023 -28.39357 -28.08361 -26.87713 -25.51327 -23.59295 -22.83560 -21.92662 -20.83267 -19.74101 -19.11631 -18.51021 -17.88560 -17.30411 -17.10248 -16.74871 -16.52933 -16.21064 -15.91099 -15.71439 -15.26895 -15.05336 -14.93493 -14.38957 -14.11781 -14.01499 -13.91344 -13.66504 -13.38122 -13.22498 -13.14626 -13.08784 -13.03609 -12.81355 -12.76669 -12.66952 -12.60594 -12.49811 -12.26464 -12.17418 -12.09825 -11.95371 -11.62437 -11.46939 -10.71194 -10.21912 -10.10060 -9.39276 -9.23163 -8.22600 -5.92700 0.72373 1.21747 1.34655 1.41962 1.45747 1.54267 1.55611 2.06975 2.38171 2.72265 3.25427 3.29326 3.50459 3.67287 3.76316 3.85082 3.90227 3.96928 4.03129 4.05584 4.32095 4.47751 4.51663 4.57972 4.62288 4.64919 4.67695 4.70102 4.73537 4.81011 4.83069 4.84671 4.92476 5.09226 5.15563 5.21953 5.25669 5.26336 5.52756 5.57318 5.63660 6.10424 6.22704 6.64959 7.03458 7.05189 7.23720 7.66013 8.35282 8.85516 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009679 B = 0.005666 C = 0.003822 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2892.073837 B = 4940.782059 C = 7324.004542 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.136 3.864 3 C -0.299 4.299 4 C 0.553 3.447 5 O -0.591 6.591 6 N -0.456 5.456 7 C -0.369 4.369 8 H 0.089 0.911 9 C 0.038 3.962 10 N -0.866 5.866 11 Si 0.960 3.040 12 H -0.291 1.291 13 H -0.285 1.285 14 H -0.253 1.253 15 C 0.113 3.887 16 C -0.129 4.129 17 C 0.496 3.504 18 O -0.544 6.544 19 O -0.507 6.507 20 C 0.059 3.941 21 N -0.310 5.310 22 N -0.345 5.345 23 C 0.164 3.836 24 C -0.162 4.162 25 C -0.135 4.135 26 C -0.167 4.167 27 H 0.082 0.918 28 H 0.105 0.895 29 H 0.072 0.928 30 H 0.261 0.739 31 H 0.061 0.939 32 H 0.076 0.924 33 H 0.114 0.886 34 H 0.121 0.879 35 H 0.428 0.572 36 H 0.193 0.807 37 H 0.057 0.943 38 H 0.114 0.886 39 H 0.062 0.938 40 H 0.051 0.949 41 H 0.106 0.894 42 H 0.058 0.942 43 H 0.069 0.931 44 H 0.115 0.885 45 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.563 -14.154 -3.669 16.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.004 3.996 3 C -0.314 4.314 4 C 0.342 3.658 5 O -0.474 6.474 6 N -0.176 5.176 7 C -0.496 4.496 8 H 0.106 0.894 9 C -0.169 4.169 10 N -0.501 5.501 11 Si 0.785 3.215 12 H -0.218 1.218 13 H -0.211 1.211 14 H -0.176 1.176 15 C -0.012 4.012 16 C -0.168 4.168 17 C 0.339 3.661 18 O -0.435 6.435 19 O -0.321 6.321 20 C -0.126 4.126 21 N -0.130 5.130 22 N -0.128 5.128 23 C 0.083 3.917 24 C -0.219 4.219 25 C -0.192 4.192 26 C -0.225 4.225 27 H 0.101 0.899 28 H 0.123 0.877 29 H 0.090 0.910 30 H 0.070 0.930 31 H 0.080 0.920 32 H 0.094 0.906 33 H 0.132 0.868 34 H 0.139 0.861 35 H 0.290 0.710 36 H 0.209 0.791 37 H 0.076 0.924 38 H 0.133 0.867 39 H 0.081 0.919 40 H 0.070 0.930 41 H 0.124 0.876 42 H 0.077 0.923 43 H 0.088 0.912 44 H 0.133 0.867 45 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 6.253 -15.227 -3.694 16.870 hybrid contribution -0.345 1.720 0.335 1.786 sum 5.909 -13.507 -3.359 15.121 Atomic orbital electron populations 1.20747 0.85940 1.04674 1.03587 1.21492 0.95363 0.86326 0.96451 1.20416 0.93842 0.94291 1.22863 1.17430 0.84567 0.84125 0.79628 1.90493 1.27374 1.81839 1.47705 1.43202 1.17962 1.08669 1.47778 1.19259 0.95248 0.83164 1.51901 0.89353 1.25915 0.98386 1.00327 0.92312 1.70089 1.07961 1.40081 1.31938 0.85476 0.78524 0.79741 0.77739 1.21756 1.21124 1.17628 1.21507 0.83777 1.00899 0.95003 1.21808 0.87737 1.06342 1.00897 1.23222 0.86509 0.73375 0.83001 1.90728 1.88290 1.42385 1.22054 1.84505 1.17839 1.78488 1.51276 1.24351 0.97143 0.92208 0.98939 1.76920 0.97719 1.12508 1.25817 1.49012 1.02815 1.06234 1.54701 1.21267 0.96694 0.75286 0.98447 1.22376 1.00662 1.04634 0.94246 1.21872 0.95620 0.99219 1.02512 1.22441 0.98674 1.05337 0.96055 0.89919 0.87683 0.90959 0.92970 0.92048 0.90636 0.86783 0.86050 0.70993 0.79050 0.92423 0.86740 0.91897 0.92974 0.87568 0.92289 0.91228 0.86653 0.93097 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.14 8.27 71.24 0.59 -2.55 16 2 C 0.14 5.22 6.49 42.15 0.27 5.50 16 3 C -0.30 -13.32 5.53 -20.15 -0.11 -13.43 16 4 C 0.55 29.22 6.79 86.64 0.59 29.80 16 5 O -0.59 -35.30 13.55 -4.11 -0.06 -35.35 16 6 N -0.46 -23.28 2.52 -639.32 -1.61 -24.90 16 7 C -0.37 -20.29 9.10 84.07 0.77 -19.53 16 8 H 0.09 4.55 7.97 -2.91 -0.02 4.53 16 9 C 0.04 2.15 4.04 84.93 0.34 2.49 16 10 N -0.87 -51.95 12.50 21.67 0.27 -51.68 16 11 Si 0.96 45.39 29.64 68.60 2.03 47.43 16 12 H -0.29 -14.36 7.11 99.48 0.71 -13.65 16 13 H -0.29 -13.12 7.11 99.48 0.71 -12.41 16 14 H -0.25 -10.95 7.11 99.48 0.71 -10.24 16 15 C 0.11 4.71 4.18 86.38 0.36 5.07 16 16 C -0.13 -4.16 5.14 29.85 0.15 -4.00 16 17 C 0.50 14.22 8.11 71.24 0.58 14.80 16 18 O -0.54 -18.94 16.74 21.96 0.37 -18.57 16 19 O -0.51 -10.57 13.42 -51.41 -0.69 -11.26 16 20 C 0.06 2.28 9.46 85.66 0.81 3.09 16 21 N -0.31 -11.14 11.54 -56.25 -0.65 -11.79 16 22 N -0.35 -11.22 3.43 -293.09 -1.01 -12.22 16 23 C 0.16 3.63 1.07 3.61 0.00 3.63 16 24 C -0.16 -2.85 8.58 71.98 0.62 -2.23 16 25 C -0.13 -2.57 7.99 71.98 0.58 -1.99 16 26 C -0.17 -3.14 8.38 71.98 0.60 -2.53 16 27 H 0.08 2.72 7.51 -2.39 -0.02 2.70 16 28 H 0.10 2.67 4.96 -2.39 -0.01 2.66 16 29 H 0.07 3.07 6.38 -2.39 -0.02 3.05 16 30 H 0.26 15.04 8.32 -92.70 -0.77 14.27 16 31 H 0.06 2.71 8.05 -2.38 -0.02 2.69 16 32 H 0.08 3.19 4.58 -2.39 -0.01 3.18 16 33 H 0.11 3.45 6.77 -2.39 -0.02 3.44 16 34 H 0.12 3.77 8.14 -2.38 -0.02 3.75 16 35 H 0.43 4.83 9.10 -74.06 -0.67 4.15 16 36 H 0.19 6.69 3.96 -2.91 -0.01 6.68 16 37 H 0.06 1.12 8.14 -2.38 -0.02 1.10 16 38 H 0.11 1.17 8.14 -2.39 -0.02 1.15 16 39 H 0.06 1.22 5.41 -2.39 -0.01 1.21 16 40 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.11 1.23 8.14 -2.39 -0.02 1.21 16 42 H 0.06 1.25 8.11 -2.39 -0.02 1.23 16 43 H 0.07 1.39 5.05 -2.39 -0.01 1.37 16 44 H 0.11 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.05 1.12 8.14 -2.38 -0.02 1.10 16 Total: -1.00 -79.83 360.99 5.18 -74.66 By element: Atomic # 1 Polarization: 25.20 SS G_CDS: 0.37 Total: 25.57 kcal Atomic # 6 Polarization: 11.96 SS G_CDS: 6.15 Total: 18.11 kcal Atomic # 7 Polarization: -97.59 SS G_CDS: -3.00 Total: -100.58 kcal Atomic # 8 Polarization: -64.80 SS G_CDS: -0.38 Total: -65.18 kcal Atomic # 14 Polarization: 45.39 SS G_CDS: 2.03 Total: 47.43 kcal Total: -79.83 5.18 -74.66 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599975791.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.393 kcal (2) G-P(sol) polarization free energy of solvation -79.835 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.656 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds