Wall clock time and date at job start Tue Mar 31 2020 14:32:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38036 * 126.29302 * 2 1 4 4 C 1.47436 * 126.41450 * 359.97438 * 3 2 1 5 5 O 1.21602 * 120.00091 * 359.97438 * 4 3 2 6 6 N 1.34773 * 119.99867 * 179.72839 * 4 3 2 7 7 C 1.46506 * 119.99968 * 180.02562 * 6 4 3 8 8 C 1.53002 * 109.47041 * 179.97438 * 7 6 4 9 9 C 1.52996 * 109.46736 * 179.97438 * 8 7 6 10 10 C 1.52994 * 109.47432 * 299.99482 * 9 8 7 11 11 C 1.53003 * 109.47473 * 59.99958 * 9 8 7 12 12 C 1.50703 * 109.47006 * 179.97438 * 9 8 7 13 13 O 1.20826 * 119.99687 * 0.02562 * 12 9 8 14 14 O 1.34228 * 120.00299 * 179.97438 * 12 9 8 15 15 C 1.41286 * 107.17192 * 180.24871 * 3 2 1 16 16 N 1.30448 * 108.02337 * 359.61207 * 15 3 2 17 17 N 1.34259 * 126.28729 * 180.02562 * 2 1 3 18 18 C 1.46503 * 125.75762 * 359.97438 * 17 2 1 19 19 C 1.50696 * 109.46974 * 90.00112 * 18 17 2 20 20 H 1.08001 * 120.00163 * 359.97438 * 19 18 17 21 21 C 1.37877 * 119.99873 * 179.97438 * 19 18 17 22 22 N 1.31515 * 119.99984 * 0.02562 * 21 19 18 23 23 Si 1.86802 * 120.00024 * 179.97438 * 21 19 18 24 24 H 1.48505 * 109.46911 * 59.99991 * 23 21 19 25 25 H 1.48493 * 109.47102 * 180.02562 * 23 21 19 26 26 H 1.48499 * 109.46969 * 300.00135 * 23 21 19 27 27 H 1.09000 * 109.47568 * 89.97502 * 1 2 3 28 28 H 1.09002 * 109.47528 * 209.97528 * 1 2 3 29 29 H 1.08998 * 109.46953 * 329.97793 * 1 2 3 30 30 H 0.97004 * 120.00018 * 359.97438 * 6 4 3 31 31 H 1.09004 * 109.46587 * 299.99661 * 7 6 4 32 32 H 1.08993 * 109.47306 * 59.99553 * 7 6 4 33 33 H 1.08999 * 109.46737 * 299.99175 * 8 7 6 34 34 H 1.08993 * 109.47411 * 59.99647 * 8 7 6 35 35 H 1.09001 * 109.46906 * 60.00392 * 10 9 8 36 36 H 1.09002 * 109.47628 * 179.97438 * 10 9 8 37 37 H 1.09001 * 109.47409 * 300.00406 * 10 9 8 38 38 H 1.08999 * 109.46725 * 59.99526 * 11 9 8 39 39 H 1.08992 * 109.47260 * 179.97438 * 11 9 8 40 40 H 1.09004 * 109.46734 * 300.00138 * 11 9 8 41 41 H 0.96698 * 117.00591 * 179.97438 * 14 12 9 42 42 H 1.08000 * 125.99145 * 179.77305 * 15 3 2 43 43 H 1.09004 * 109.46911 * 210.00324 * 18 17 2 44 44 H 1.09002 * 109.46643 * 329.99944 * 18 17 2 45 45 H 0.96997 * 120.00146 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3241 1.1126 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 0.6996 2.7878 -0.0015 6 7 2.7999 3.5106 0.0051 7 6 2.3644 4.9095 0.0051 8 6 3.5902 5.8251 0.0127 9 6 3.1353 7.2859 0.0121 10 6 2.3018 7.5601 -1.2412 11 6 2.2885 7.5570 1.2572 12 6 4.3426 8.1879 0.0201 13 8 5.4528 7.7112 0.0253 14 8 4.1846 9.5209 0.0205 15 6 3.6589 0.6498 -0.0059 16 7 3.6340 -0.6545 -0.0007 17 7 2.3016 -1.0822 -0.0005 18 6 1.8500 -2.4759 -0.0006 19 6 1.6946 -2.9535 -1.4214 20 1 1.9103 -2.2855 -2.2423 21 6 1.2772 -4.2431 -1.6734 22 7 1.0141 -5.0563 -0.6739 23 14 1.0839 -4.8349 -3.4347 24 1 2.3894 -4.7369 -4.1358 25 1 0.6263 -6.2476 -3.4347 26 1 0.0820 -3.9905 -4.1335 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5134 29 1 -0.3633 0.8898 0.5142 30 1 3.7462 3.2972 0.0098 31 1 1.7699 5.1049 -0.8874 32 1 1.7618 5.1023 0.8925 33 1 4.1842 5.6296 0.9054 34 1 4.1932 5.6324 -0.8745 35 1 1.4286 6.9077 -1.2467 36 1 1.9773 8.6007 -1.2415 37 1 2.9051 7.3670 -2.1283 38 1 2.8824 7.3617 2.1500 39 1 1.9649 8.5978 1.2570 40 1 1.4153 6.9046 1.2518 41 1 4.9884 10.0583 0.0262 42 1 4.5448 1.2675 -0.0108 43 1 2.5848 -3.0960 0.5130 44 1 0.8915 -2.5472 0.5136 45 1 0.7200 -5.9635 -0.8511 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001599980608.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:14 Heat of formation + Delta-G solvation = -102.938377 kcal Electronic energy + Delta-G solvation = -26777.464486 eV Core-core repulsion = 22794.773150 eV Total energy + Delta-G solvation = -3982.691337 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.29330 -41.62410 -40.11124 -37.98062 -37.03783 -35.82155 -35.22016 -33.78777 -32.73370 -30.41801 -28.90493 -28.31831 -28.05024 -26.07313 -25.34238 -24.06183 -23.02243 -21.28594 -20.77418 -20.03898 -18.86256 -18.85311 -18.30947 -17.71875 -16.83749 -16.81820 -16.56041 -16.49482 -16.22161 -15.92401 -15.36408 -14.99687 -14.93094 -14.61447 -14.34808 -14.20544 -14.04675 -13.91388 -13.66820 -13.56764 -13.39668 -13.08072 -12.96526 -12.83444 -12.68517 -12.54196 -12.51427 -12.32461 -12.29742 -11.97643 -11.88389 -11.85123 -11.69709 -11.31190 -10.77970 -10.75293 -10.25520 -10.02823 -9.40724 -8.37402 -6.53844 0.70743 1.19852 1.34041 1.38986 1.39581 1.48029 1.66496 2.01058 2.32560 2.47221 2.58217 2.94632 3.59412 3.76187 3.76461 3.77360 3.86407 4.14537 4.17344 4.27039 4.29215 4.37283 4.53756 4.62809 4.66393 4.78866 4.80177 4.85548 4.89115 4.91197 4.98972 5.00750 5.06269 5.13401 5.20392 5.35022 5.35654 5.49120 5.57960 5.61556 5.69869 5.75302 6.06124 6.54927 6.65390 6.86573 6.99316 7.17044 7.39523 8.70223 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.027439 B = 0.002122 C = 0.002106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1020.201319 B =13193.361802 C =13290.678276 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.144 3.856 3 C -0.331 4.331 4 C 0.606 3.394 5 O -0.581 6.581 6 N -0.718 5.718 7 C 0.123 3.877 8 C -0.107 4.107 9 C -0.046 4.046 10 C -0.147 4.147 11 C -0.146 4.146 12 C 0.493 3.507 13 O -0.549 6.549 14 O -0.508 6.508 15 C 0.078 3.922 16 N -0.338 5.338 17 N -0.339 5.339 18 C 0.267 3.733 19 C -0.556 4.556 20 H 0.052 0.948 21 C 0.023 3.977 22 N -0.916 5.916 23 Si 0.971 3.029 24 H -0.273 1.273 25 H -0.273 1.273 26 H -0.266 1.266 27 H 0.082 0.918 28 H 0.070 0.930 29 H 0.103 0.897 30 H 0.411 0.589 31 H 0.072 0.928 32 H 0.074 0.926 33 H 0.080 0.920 34 H 0.078 0.922 35 H 0.083 0.917 36 H 0.080 0.920 37 H 0.060 0.940 38 H 0.061 0.939 39 H 0.080 0.920 40 H 0.083 0.917 41 H 0.426 0.574 42 H 0.225 0.775 43 H 0.031 0.969 44 H 0.051 0.949 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.989 28.277 2.031 28.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.008 3.992 3 C -0.347 4.347 4 C 0.395 3.605 5 O -0.463 6.463 6 N -0.370 5.370 7 C 0.000 4.000 8 C -0.145 4.145 9 C -0.048 4.048 10 C -0.204 4.204 11 C -0.203 4.203 12 C 0.336 3.664 13 O -0.439 6.439 14 O -0.321 6.321 15 C -0.109 4.109 16 N -0.158 5.158 17 N -0.116 5.116 18 C 0.148 3.852 19 C -0.594 4.594 20 H 0.070 0.930 21 C -0.178 4.178 22 N -0.554 5.554 23 Si 0.795 3.205 24 H -0.199 1.199 25 H -0.198 1.198 26 H -0.191 1.191 27 H 0.101 0.899 28 H 0.089 0.911 29 H 0.122 0.878 30 H 0.247 0.753 31 H 0.090 0.910 32 H 0.092 0.908 33 H 0.098 0.902 34 H 0.097 0.903 35 H 0.102 0.898 36 H 0.099 0.901 37 H 0.079 0.921 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.102 0.898 41 H 0.288 0.712 42 H 0.241 0.759 43 H 0.049 0.951 44 H 0.069 0.931 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 2.732 26.700 2.099 26.922 hybrid contribution 0.730 0.079 -0.696 1.011 sum 3.461 26.779 1.403 27.039 Atomic orbital electron populations 1.20549 0.85811 1.04055 1.03920 1.21991 0.95980 0.86731 0.94451 1.19984 0.93179 0.93232 1.28257 1.17058 0.85079 0.83735 0.74638 1.90675 1.17808 1.84696 1.53092 1.45566 1.09966 1.05585 1.75855 1.21487 0.96626 0.78912 1.02956 1.21620 0.97071 0.91358 1.04481 1.20402 0.91710 0.92011 1.00658 1.21990 1.00009 1.04102 0.94259 1.21990 0.99891 1.04105 0.94331 1.23602 0.90585 0.82050 0.70144 1.90729 1.28886 1.77015 1.47314 1.84484 1.44292 1.18596 1.84722 1.24498 0.97724 0.91597 0.97032 1.77095 0.98380 1.14495 1.25817 1.49105 1.03376 1.07766 1.51328 1.19363 0.95274 0.72388 0.98135 1.21357 1.47993 0.98462 0.91552 0.93020 1.25740 0.93850 0.95946 1.02308 1.69988 1.44760 1.07593 1.33086 0.85402 0.78816 0.77678 0.78609 1.19872 1.19769 1.19095 0.89921 0.91149 0.87837 0.75300 0.91024 0.90813 0.90177 0.90340 0.89828 0.90103 0.92073 0.91964 0.90125 0.89791 0.71217 0.75878 0.95132 0.93121 0.91655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.11 9.57 71.24 0.68 -2.43 16 2 C 0.14 5.91 7.01 42.14 0.30 6.21 16 3 C -0.33 -11.67 6.13 -20.15 -0.12 -11.79 16 4 C 0.61 18.62 7.81 86.67 0.68 19.29 16 5 O -0.58 -20.74 14.84 -4.04 -0.06 -20.80 16 6 N -0.72 -15.26 5.55 -466.36 -2.59 -17.84 16 7 C 0.12 2.06 4.97 86.38 0.43 2.49 16 8 C -0.11 -1.46 3.67 30.59 0.11 -1.34 16 9 C -0.05 -0.53 0.74 -52.93 -0.04 -0.57 16 10 C -0.15 -1.43 8.05 71.98 0.58 -0.85 16 11 C -0.15 -1.37 8.05 71.98 0.58 -0.79 16 12 C 0.49 7.01 6.92 71.24 0.49 7.50 16 13 O -0.55 -11.59 16.74 21.96 0.37 -11.22 16 14 O -0.51 -4.55 13.23 -51.40 -0.68 -5.23 16 15 C 0.08 2.59 11.50 85.65 0.99 3.58 16 16 N -0.34 -14.61 12.50 -56.28 -0.70 -15.32 16 17 N -0.34 -15.70 3.56 -336.70 -1.20 -16.90 16 18 C 0.27 13.86 5.97 85.63 0.51 14.37 16 19 C -0.56 -30.71 9.39 25.60 0.24 -30.47 16 20 H 0.05 2.93 7.81 -2.91 -0.02 2.91 16 21 C 0.02 1.25 5.46 84.65 0.46 1.71 16 22 N -0.92 -51.40 13.29 21.45 0.28 -51.11 16 23 Si 0.97 42.71 29.54 68.60 2.03 44.73 16 24 H -0.27 -11.95 7.11 99.48 0.71 -11.24 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.33 7.11 99.48 0.71 -10.62 16 27 H 0.08 2.99 8.14 -2.39 -0.02 2.97 16 28 H 0.07 2.55 7.05 -2.39 -0.02 2.53 16 29 H 0.10 3.53 6.50 -2.39 -0.02 3.51 16 30 H 0.41 6.78 7.43 -92.71 -0.69 6.09 16 31 H 0.07 1.25 6.43 -2.39 -0.02 1.23 16 32 H 0.07 1.25 6.43 -2.39 -0.02 1.23 16 33 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 34 H 0.08 1.13 8.10 -2.39 -0.02 1.11 16 35 H 0.08 0.79 6.43 -2.39 -0.02 0.77 16 36 H 0.08 0.65 8.11 -2.39 -0.02 0.63 16 37 H 0.06 0.63 8.14 -2.39 -0.02 0.61 16 38 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 0.62 8.11 -2.39 -0.02 0.60 16 40 H 0.08 0.76 6.43 -2.39 -0.02 0.74 16 41 H 0.43 0.60 9.10 -74.06 -0.67 -0.08 16 42 H 0.22 4.79 7.50 -2.91 -0.02 4.77 16 43 H 0.03 1.71 8.14 -2.38 -0.02 1.69 16 44 H 0.05 2.63 7.02 -2.39 -0.02 2.61 16 45 H 0.27 14.41 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -73.13 377.23 3.01 -70.12 By element: Atomic # 1 Polarization: 16.99 SS G_CDS: -0.32 Total: 16.67 kcal Atomic # 6 Polarization: 1.02 SS G_CDS: 5.88 Total: 6.90 kcal Atomic # 7 Polarization: -96.97 SS G_CDS: -4.21 Total: -101.17 kcal Atomic # 8 Polarization: -36.88 SS G_CDS: -0.37 Total: -37.26 kcal Atomic # 14 Polarization: 42.71 SS G_CDS: 2.03 Total: 44.73 kcal Total: -73.13 3.01 -70.12 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001599980608.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.818 kcal (2) G-P(sol) polarization free energy of solvation -73.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.949 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.010 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.120 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds