Wall clock time and date at job start Tue Mar 31 2020 14:23:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86806 * 119.99778 * 2 1 4 4 H 1.48499 * 109.46954 * 269.99500 * 3 2 1 5 5 H 1.48501 * 109.47144 * 29.99666 * 3 2 1 6 6 H 1.48500 * 109.46793 * 149.99704 * 3 2 1 7 7 C 1.37877 * 120.00133 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00185 * 180.02562 * 7 2 1 9 9 C 1.50697 * 120.00149 * 0.02562 * 7 2 1 10 10 N 1.46897 * 109.47167 * 179.97438 * 9 7 2 11 11 C 1.46953 * 110.96745 * 65.49616 * 10 9 7 12 12 C 1.53244 * 109.30832 * 187.06199 * 11 10 9 13 13 N 1.47080 * 108.68563 * 306.46928 * 12 11 10 14 14 C 1.34773 * 120.88096 * 231.06850 * 13 12 11 15 15 O 1.21592 * 120.00113 * 174.77494 * 14 13 12 16 16 N 1.34778 * 120.00078 * 354.77678 * 14 13 12 17 17 C 1.46508 * 119.99642 * 184.97868 * 16 14 13 18 18 H 1.08997 * 110.86477 * 322.63114 * 17 16 14 19 19 C 1.54580 * 110.97943 * 86.45451 * 17 16 14 20 20 C 1.51109 * 104.84342 * 143.14583 * 19 17 16 21 21 C 1.32707 * 110.74604 * 343.39271 * 20 19 17 22 22 C 1.46946 * 124.63314 * 180.02562 * 21 20 19 23 23 O 1.21541 * 119.99259 * 0.02562 * 22 21 20 24 24 O 1.34792 * 120.00352 * 180.02562 * 22 21 20 25 25 C 1.51120 * 110.73977 * 359.97438 * 21 20 19 26 26 C 1.47078 * 118.23493 * 51.08484 * 13 12 11 27 27 C 1.46907 * 111.00008 * 189.99981 * 10 9 7 28 28 H 0.97002 * 120.00049 * 0.02562 * 1 2 3 29 29 H 1.09004 * 109.47012 * 59.99473 * 9 7 2 30 30 H 1.08994 * 109.47053 * 299.99930 * 9 7 2 31 31 H 1.09000 * 109.34384 * 67.21373 * 11 10 9 32 32 H 1.08997 * 109.67176 * 307.10798 * 11 10 9 33 33 H 1.08997 * 109.62547 * 186.66132 * 12 11 10 34 34 H 1.09006 * 109.62822 * 66.27596 * 12 11 10 35 35 H 0.96991 * 119.99840 * 4.97048 * 16 14 13 36 36 H 1.09004 * 110.36217 * 261.98820 * 19 17 16 37 37 H 1.08998 * 110.36503 * 24.19245 * 19 17 16 38 38 H 1.08001 * 124.62656 * 163.39224 * 20 19 17 39 39 H 0.96701 * 116.99944 * 179.97438 * 24 22 21 40 40 H 1.09000 * 110.36419 * 257.76098 * 25 21 20 41 41 H 1.09002 * 110.35900 * 135.45064 * 25 21 20 42 42 H 1.09004 * 109.62705 * 68.53188 * 26 13 12 43 43 H 1.09000 * 109.63151 * 188.91169 * 26 13 12 44 44 H 1.08998 * 109.49146 * 52.78718 * 27 10 9 45 45 H 1.08994 * 109.48994 * 292.71100 * 27 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4465 2.6528 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2057 -3.6156 0.0005 11 6 2.9800 -3.6455 1.2492 12 6 4.0791 -4.7077 1.1386 13 7 3.4618 -5.9862 0.7544 14 6 3.7125 -7.1123 1.4511 15 8 3.1215 -8.1396 1.1793 16 7 4.6182 -7.0998 2.4490 17 6 4.9708 -8.3461 3.1338 18 1 4.0959 -8.9855 3.2513 19 6 6.1020 -9.0878 2.3857 20 6 6.9553 -9.6931 3.4761 21 6 6.6965 -9.1233 4.6463 22 6 7.3534 -9.4789 5.9118 23 8 8.1998 -10.3508 5.9329 24 8 7.0173 -8.8381 7.0490 25 6 5.6348 -8.0578 4.4997 26 6 2.5639 -6.0031 -0.4104 27 6 1.5213 -4.8935 -0.2376 28 1 -0.4850 0.8401 -0.0004 29 1 0.6247 -2.5571 -0.8897 30 1 0.6242 -2.5567 0.8902 31 1 2.3177 -3.8924 2.0789 32 1 3.4336 -2.6697 1.4231 33 1 4.5802 -4.8174 2.1003 34 1 4.8029 -4.4082 0.3806 35 1 5.0367 -6.2658 2.7137 36 1 5.6871 -9.8703 1.7503 37 1 6.6862 -8.3864 1.7899 38 1 7.6772 -10.4818 3.3238 39 1 7.4764 -9.1069 7.8565 40 1 6.0892 -7.0671 4.4998 41 1 4.9018 -8.1399 5.3022 42 1 3.1396 -5.8264 -1.3190 43 1 2.0659 -6.9705 -0.4749 44 1 0.9162 -4.8191 -1.1411 45 1 0.8797 -5.1263 0.6122 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001601067933.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:23:06 Heat of formation + Delta-G solvation = -83.268960 kcal Electronic energy + Delta-G solvation = -27063.527915 eV Core-core repulsion = 23081.689508 eV Total energy + Delta-G solvation = -3981.838407 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.61 seconds Orbital eigenvalues (eV) -40.86216 -40.27540 -38.72326 -37.42406 -36.44922 -34.48232 -33.97106 -32.40246 -30.79137 -29.34824 -28.82567 -27.82388 -25.44300 -23.89992 -23.33483 -22.35927 -21.42566 -20.72069 -19.57748 -19.15521 -18.26468 -17.90534 -17.34731 -16.73267 -16.39040 -15.93380 -15.50831 -14.91078 -14.88462 -14.58131 -14.43958 -14.05436 -13.81776 -13.65729 -13.32226 -13.27593 -13.07002 -13.03371 -12.39206 -12.30724 -12.15347 -11.95771 -11.92210 -11.67924 -11.31079 -11.08180 -11.04625 -11.02341 -10.78215 -10.68135 -10.54748 -10.03623 -9.88962 -9.55822 -9.32450 -9.26589 -8.51609 -8.39354 -7.35036 -6.09154 -4.11444 0.65132 2.51034 2.59318 2.65929 3.19316 3.27422 3.33889 3.35930 3.78671 4.05942 4.20086 4.35738 4.66662 4.70459 4.72062 4.83779 5.10097 5.21461 5.23545 5.27035 5.35001 5.37381 5.41415 5.46679 5.62529 5.64638 5.74816 5.80754 5.83876 5.93195 6.03536 6.04473 6.27392 6.37087 6.41290 6.42889 6.59703 6.98144 7.19623 7.25692 7.48223 7.70558 7.92507 7.98809 8.09351 8.44321 8.59771 8.95647 9.53193 11.01585 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.018945 B = 0.002322 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.608342 B =12057.381028 C =13081.401904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.897 5.897 2 C 0.056 3.944 3 Si 0.899 3.101 4 H -0.280 1.280 5 H -0.288 1.288 6 H -0.274 1.274 7 C -0.510 4.510 8 H 0.064 0.936 9 C 0.193 3.807 10 N -0.536 5.536 11 C 0.051 3.949 12 C 0.115 3.885 13 N -0.624 5.624 14 C 0.709 3.291 15 O -0.596 6.596 16 N -0.742 5.742 17 C 0.163 3.837 18 H 0.105 0.895 19 C -0.125 4.125 20 C -0.038 4.038 21 C -0.184 4.184 22 C 0.537 3.463 23 O -0.520 6.520 24 O -0.510 6.510 25 C -0.087 4.087 26 C 0.136 3.864 27 C 0.040 3.960 28 H 0.262 0.738 29 H 0.032 0.968 30 H -0.009 1.009 31 H 0.024 0.976 32 H 0.097 0.903 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.398 0.602 36 H 0.093 0.907 37 H 0.098 0.902 38 H 0.145 0.855 39 H 0.413 0.587 40 H 0.087 0.913 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.089 0.911 44 H 0.082 0.918 45 H 0.027 0.973 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.433 -16.797 9.217 23.400 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.536 5.536 2 C -0.146 4.146 3 Si 0.727 3.273 4 H -0.206 1.206 5 H -0.213 1.213 6 H -0.199 1.199 7 C -0.549 4.549 8 H 0.082 0.918 9 C 0.069 3.931 10 N -0.261 5.261 11 C -0.078 4.078 12 C -0.009 4.009 13 N -0.361 5.361 14 C 0.411 3.589 15 O -0.475 6.475 16 N -0.400 5.400 17 C 0.057 3.943 18 H 0.123 0.877 19 C -0.163 4.163 20 C -0.057 4.057 21 C -0.185 4.185 22 C 0.382 3.618 23 O -0.410 6.410 24 O -0.321 6.321 25 C -0.124 4.124 26 C 0.013 3.987 27 C -0.089 4.089 28 H 0.072 0.928 29 H 0.050 0.950 30 H 0.009 0.991 31 H 0.043 0.957 32 H 0.115 0.885 33 H 0.087 0.913 34 H 0.094 0.906 35 H 0.235 0.765 36 H 0.112 0.888 37 H 0.116 0.884 38 H 0.162 0.838 39 H 0.272 0.728 40 H 0.106 0.894 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.107 0.893 44 H 0.100 0.900 45 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 13.164 -17.438 8.264 23.360 hybrid contribution 0.385 1.159 1.404 1.861 sum 13.549 -16.280 9.668 23.282 Atomic orbital electron populations 1.69957 1.06094 1.26877 1.50699 1.25002 0.94868 0.99371 0.95369 0.86492 0.79629 0.83066 0.78157 1.20609 1.21341 1.19860 1.21127 0.93424 0.89868 1.50432 0.91827 1.19726 0.90004 0.87154 0.96255 1.62037 1.28052 1.02797 1.33207 1.22319 0.95105 0.98838 0.91540 1.21867 0.96350 0.83161 0.99490 1.47398 1.49811 1.07163 1.31678 1.15799 0.79884 0.83779 0.79435 1.90888 1.53981 1.31636 1.70958 1.45240 1.46058 1.10498 1.38161 1.21515 0.97313 0.85735 0.89742 0.87705 1.22053 0.96185 1.00837 0.97261 1.24250 0.94320 0.94222 0.92914 1.20754 1.03490 1.03454 0.90827 1.20521 0.79225 0.78075 0.83984 1.90925 1.31989 1.31159 1.86948 1.84626 1.65554 1.62778 1.19178 1.21375 0.95985 0.97625 0.97462 1.21645 0.91153 0.99495 0.86431 1.22423 0.95042 0.90499 1.00953 0.92847 0.94994 0.99111 0.95749 0.88467 0.91281 0.90621 0.76489 0.88813 0.88405 0.83761 0.72827 0.89424 0.89307 0.91145 0.89273 0.90016 0.95509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.96 13.29 55.43 0.74 -25.22 16 2 C 0.06 1.52 5.46 -17.82 -0.10 1.42 16 3 Si 0.90 20.83 29.54 -169.99 -5.02 15.81 16 4 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 5 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.51 -13.59 8.41 -34.44 -0.29 -13.88 16 8 H 0.06 1.65 7.11 -52.49 -0.37 1.28 16 9 C 0.19 4.82 4.73 -4.98 -0.02 4.79 16 10 N -0.54 -10.76 4.62 -235.72 -1.09 -11.85 16 11 C 0.05 0.89 5.46 -3.67 -0.02 0.87 16 12 C 0.11 1.50 6.53 -3.60 -0.02 1.48 16 13 N -0.62 -8.90 3.01 -178.19 -0.54 -9.43 16 14 C 0.71 10.03 8.30 -86.92 -0.72 9.30 16 15 O -0.60 -10.32 15.51 5.28 0.08 -10.24 16 16 N -0.74 -7.54 5.09 -57.05 -0.29 -7.83 16 17 C 0.16 1.43 3.45 -66.26 -0.23 1.20 16 18 H 0.11 1.08 7.66 -51.93 -0.40 0.69 16 19 C -0.13 -0.94 6.53 -26.85 -0.18 -1.12 16 20 C -0.04 -0.27 10.43 -35.99 -0.38 -0.65 16 21 C -0.18 -1.44 6.09 -102.78 -0.63 -2.07 16 22 C 0.54 4.72 8.31 34.26 0.28 5.01 16 23 O -0.52 -6.02 17.55 -19.30 -0.34 -6.36 16 24 O -0.51 -3.28 13.25 -40.74 -0.54 -3.82 16 25 C -0.09 -0.62 6.28 -26.84 -0.17 -0.79 16 26 C 0.14 2.04 6.61 -3.61 -0.02 2.02 16 27 C 0.04 0.70 5.62 -3.70 -0.02 0.68 16 28 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 29 H 0.03 0.86 7.97 -51.93 -0.41 0.44 16 30 H -0.01 -0.24 8.13 -51.93 -0.42 -0.66 16 31 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 32 H 0.10 1.79 6.67 -51.93 -0.35 1.44 16 33 H 0.07 0.68 5.74 -51.93 -0.30 0.38 16 34 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 35 H 0.40 3.27 5.91 -40.82 -0.24 3.03 16 36 H 0.09 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.10 0.72 8.08 -51.93 -0.42 0.30 16 38 H 0.14 0.92 8.03 -52.49 -0.42 0.49 16 39 H 0.41 0.88 9.11 45.56 0.42 1.30 16 40 H 0.09 0.55 7.78 -51.93 -0.40 0.14 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.20 16 42 H 0.07 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.09 1.34 7.04 -51.93 -0.37 0.98 16 44 H 0.08 1.38 7.99 -51.93 -0.41 0.97 16 45 H 0.03 0.49 8.14 -51.93 -0.42 0.07 16 LS Contribution 369.78 15.07 5.57 5.57 Total: -1.00 -34.08 369.78 -9.71 -43.79 By element: Atomic # 1 Polarization: 7.09 SS G_CDS: -5.77 Total: 1.31 kcal Atomic # 6 Polarization: 10.78 SS G_CDS: -2.51 Total: 8.27 kcal Atomic # 7 Polarization: -53.15 SS G_CDS: -1.18 Total: -54.33 kcal Atomic # 8 Polarization: -19.62 SS G_CDS: -0.80 Total: -20.42 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -34.08 -9.71 -43.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001601067933.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.478 kcal (2) G-P(sol) polarization free energy of solvation -34.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.561 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.708 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.791 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds