Wall clock time and date at job start Tue Mar 31 2020 13:49:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99619 * 2 1 4 4 C 1.52994 * 109.47550 * 293.95516 * 3 2 1 5 5 C 1.50706 * 109.47422 * 180.02562 * 4 3 2 6 6 O 1.20822 * 120.00024 * 359.97438 * 5 4 3 7 7 O 1.34230 * 119.99897 * 180.02562 * 5 4 3 8 8 C 1.46893 * 111.00418 * 123.95400 * 2 1 3 9 9 C 1.53006 * 109.46666 * 66.04751 * 8 2 1 10 10 H 1.09001 * 109.47051 * 304.99405 * 9 8 2 11 11 O 1.42893 * 109.47364 * 65.00147 * 9 8 2 12 12 C 1.53009 * 109.46831 * 184.99889 * 9 8 2 13 13 O 1.42897 * 109.46921 * 174.99581 * 12 9 8 14 14 C 1.35675 * 117.00125 * 180.02562 * 13 12 9 15 15 C 1.39313 * 119.81487 * 359.72422 * 14 13 12 16 16 C 1.36440 * 120.18365 * 179.75720 * 15 14 13 17 17 C 1.40831 * 119.81045 * 0.52339 * 16 15 14 18 18 C 1.41217 * 120.17778 * 179.71623 * 17 16 15 19 19 H 1.08004 * 120.00061 * 24.56411 * 18 17 16 20 20 C 1.39890 * 120.00032 * 204.56166 * 18 17 16 21 21 N 1.30886 * 119.99515 * 17.94615 * 20 18 17 22 22 Si 1.86792 * 120.00234 * 197.94283 * 20 18 17 23 23 H 1.48504 * 109.46983 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47133 * 119.99688 * 22 20 18 25 25 H 1.48495 * 109.47273 * 240.00309 * 22 20 18 26 26 C 1.40834 * 119.64137 * 359.73552 * 17 16 15 27 27 C 1.36430 * 119.81194 * 0.02562 * 26 17 16 28 28 H 1.09006 * 109.46768 * 296.04353 * 1 2 3 29 29 H 1.08997 * 109.47515 * 56.04039 * 1 2 3 30 30 H 1.09003 * 109.47131 * 176.04774 * 1 2 3 31 31 H 1.08995 * 109.47444 * 53.95992 * 3 2 1 32 32 H 1.09003 * 109.46935 * 173.95777 * 3 2 1 33 33 H 1.09003 * 109.47184 * 300.00397 * 4 3 2 34 34 H 1.08997 * 109.47119 * 59.99923 * 4 3 2 35 35 H 0.96696 * 116.99922 * 180.02562 * 7 5 4 36 36 H 1.09002 * 109.47379 * 306.04994 * 8 2 1 37 37 H 1.08998 * 109.47532 * 186.04146 * 8 2 1 38 38 H 0.96701 * 113.99898 * 59.99440 * 11 9 8 39 39 H 1.09003 * 109.46699 * 55.00020 * 12 9 8 40 40 H 1.08999 * 109.47088 * 295.00279 * 12 9 8 41 41 H 1.08000 * 119.90714 * 0.02972 * 15 14 13 42 42 H 1.08007 * 120.09092 * 180.25554 * 16 15 14 43 43 H 0.96999 * 119.99379 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.09009 * 179.97438 * 26 17 16 45 45 H 1.08004 * 119.90814 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1719 3.4643 -1.3184 6 8 2.7849 3.8761 -0.3621 7 8 1.9714 4.2602 -2.3806 8 6 1.9955 -0.7659 1.1375 9 6 1.6315 -2.2426 0.9701 10 1 0.5532 -2.3389 0.8432 11 8 2.2956 -2.7695 -0.1802 12 6 2.0702 -3.0200 2.2129 13 8 1.6274 -4.3746 2.1083 14 6 1.9361 -5.2047 3.1361 15 6 2.6591 -4.7207 4.2242 16 6 2.9693 -5.5476 5.2642 17 6 2.5660 -6.8965 5.2304 18 6 2.8881 -7.7607 6.2999 19 1 3.0731 -7.3562 7.2841 20 6 2.9676 -9.1406 6.0845 21 7 3.0954 -9.6067 4.8681 22 14 2.8914 -10.3179 7.5327 23 1 2.7458 -9.5446 8.7921 24 1 1.7269 -11.2253 7.3722 25 1 4.1403 -11.1196 7.5852 26 6 1.8401 -7.3790 4.1242 27 6 1.5338 -6.5378 3.0948 28 1 -0.3633 0.4512 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3633 -1.0252 -0.0708 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3445 0.1082 33 1 2.0657 1.5016 -2.1491 34 1 0.5471 2.0845 -1.4264 35 1 2.3373 5.1540 -2.3346 36 1 1.5612 -0.3873 2.0628 37 1 3.0798 -0.6611 1.1755 38 1 3.2601 -2.7165 -0.1362 39 1 1.6332 -2.5624 3.1006 40 1 3.1572 -2.9978 2.2904 41 1 2.9711 -3.6870 4.2465 42 1 3.5263 -5.1698 6.1089 43 1 3.1501 -10.5636 4.7188 44 1 1.5276 -8.4123 4.0907 45 1 0.9776 -6.9063 2.2455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604149442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:59 Heat of formation + Delta-G solvation = -157.052060 kcal Electronic energy + Delta-G solvation = -26093.277337 eV Core-core repulsion = 22075.946704 eV Total energy + Delta-G solvation = -4017.330633 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.72432 -39.25712 -38.35254 -36.87604 -36.47367 -35.79757 -33.31519 -32.28568 -30.39889 -29.51933 -28.96484 -27.42070 -25.89127 -24.62826 -23.04886 -21.56308 -20.89222 -20.64544 -20.54729 -18.58392 -17.44450 -17.33266 -16.95199 -16.76332 -16.46000 -16.14260 -15.52862 -15.23520 -15.09144 -14.66803 -14.14708 -14.06436 -13.93340 -13.60260 -13.44698 -13.19344 -12.82238 -12.45879 -12.27382 -12.14516 -12.02857 -11.98581 -11.87171 -11.75035 -11.44363 -11.35460 -11.15662 -11.03815 -10.93675 -10.76984 -10.58175 -9.99960 -9.93312 -9.80973 -9.33630 -9.02308 -8.68224 -7.64550 -7.03314 -6.72453 -4.25580 1.75022 2.47759 2.76825 2.94912 3.08888 3.13943 3.20337 3.44888 3.95194 4.06682 4.28483 4.46319 4.50856 4.61767 4.76259 4.87145 4.91616 5.04624 5.12581 5.14497 5.18713 5.27850 5.40341 5.44412 5.47077 5.60790 5.66586 5.68909 6.01008 6.03861 6.05827 6.22679 6.58896 6.63433 6.73140 6.97671 7.11072 7.18527 7.42361 7.46238 7.55591 7.75891 7.79105 8.00675 8.20399 8.45159 8.65371 8.89904 8.98625 10.21998 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.043139 B = 0.001729 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.914688 B =16190.909558 C =16509.477873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.013 3.987 2 N -0.530 5.530 3 C 0.065 3.935 4 C -0.112 4.112 5 C 0.481 3.519 6 O -0.517 6.517 7 O -0.518 6.518 8 C 0.027 3.973 9 C 0.116 3.884 10 H 0.106 0.894 11 O -0.540 6.540 12 C 0.037 3.963 13 O -0.317 6.317 14 C -0.009 4.009 15 C -0.168 4.168 16 C -0.198 4.198 17 C 0.087 3.913 18 C -0.463 4.463 19 H 0.077 0.923 20 C 0.075 3.925 21 N -0.798 5.798 22 Si 0.907 3.093 23 H -0.261 1.261 24 H -0.272 1.272 25 H -0.275 1.275 26 C -0.133 4.133 27 C -0.119 4.119 28 H 0.028 0.972 29 H 0.071 0.929 30 H 0.078 0.922 31 H 0.044 0.956 32 H 0.085 0.915 33 H 0.118 0.882 34 H 0.107 0.893 35 H 0.411 0.589 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.371 0.629 39 H 0.056 0.944 40 H 0.053 0.947 41 H 0.092 0.908 42 H 0.094 0.906 43 H 0.280 0.720 44 H 0.126 0.874 45 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.231 20.614 -11.372 23.763 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 N -0.254 5.254 3 C -0.063 4.063 4 C -0.150 4.150 5 C 0.323 3.677 6 O -0.406 6.406 7 O -0.330 6.330 8 C -0.101 4.101 9 C 0.056 3.944 10 H 0.123 0.877 11 O -0.344 6.344 12 C -0.040 4.040 13 O -0.232 6.232 14 C -0.052 4.052 15 C -0.187 4.187 16 C -0.218 4.218 17 C 0.085 3.915 18 C -0.493 4.493 19 H 0.095 0.905 20 C -0.142 4.142 21 N -0.424 5.424 22 Si 0.731 3.269 23 H -0.185 1.185 24 H -0.197 1.197 25 H -0.201 1.201 26 C -0.153 4.153 27 C -0.138 4.138 28 H 0.047 0.953 29 H 0.089 0.911 30 H 0.097 0.903 31 H 0.063 0.937 32 H 0.103 0.897 33 H 0.136 0.864 34 H 0.125 0.875 35 H 0.270 0.730 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.217 0.783 39 H 0.074 0.926 40 H 0.071 0.929 41 H 0.110 0.890 42 H 0.112 0.888 43 H 0.090 0.910 44 H 0.143 0.857 45 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -3.750 19.712 -12.037 23.399 hybrid contribution 0.760 0.735 1.836 2.119 sum -2.990 20.447 -10.201 23.045 Atomic orbital electron populations 1.22588 0.87121 1.03250 1.00579 1.61791 1.08224 1.12184 1.43231 1.21880 1.01439 0.88217 0.94783 1.21336 1.03626 0.88211 1.01803 1.23501 0.76409 0.88485 0.79291 1.90747 1.38796 1.75664 1.35365 1.84538 1.74583 1.29642 1.44219 1.22756 1.01111 0.94345 0.91899 1.21871 0.98770 0.88902 0.84846 0.87664 1.86631 1.23133 1.84219 1.40378 1.23117 0.99066 0.83922 0.97894 1.85882 1.75873 1.18587 1.42897 1.18620 1.06753 0.90576 0.89287 1.20396 1.03966 0.98304 0.96053 1.20553 1.06904 0.95376 0.98976 1.17609 0.89749 0.91247 0.92907 1.19490 1.42422 0.90865 0.96556 0.90534 1.25881 0.92303 0.99376 0.96660 1.69847 1.35359 1.15392 1.21836 0.86290 0.78533 0.79964 0.82084 1.18497 1.19739 1.20079 1.20980 1.00378 0.99347 0.94563 1.19842 1.03636 0.90608 0.99678 0.95328 0.91067 0.90336 0.93729 0.89652 0.86413 0.87457 0.73039 0.93333 0.89845 0.78269 0.92607 0.92851 0.88971 0.88785 0.90960 0.85660 0.88417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.10 9.13 60.06 0.55 0.65 16 2 N -0.53 -4.64 4.71 -242.92 -1.14 -5.78 16 3 C 0.06 0.50 4.25 -3.83 -0.02 0.49 16 4 C -0.11 -0.68 5.74 -27.88 -0.16 -0.84 16 5 C 0.48 3.55 8.33 36.01 0.30 3.85 16 6 O -0.52 -5.55 16.74 -18.75 -0.31 -5.87 16 7 O -0.52 -2.76 13.42 -39.26 -0.53 -3.28 16 8 C 0.03 0.25 4.60 -3.82 -0.02 0.24 16 9 C 0.12 1.41 3.20 -26.72 -0.09 1.33 16 10 H 0.11 1.34 6.34 -51.93 -0.33 1.02 16 11 O -0.54 -7.25 13.25 -40.08 -0.53 -7.78 16 12 C 0.04 0.56 4.36 37.16 0.16 0.72 16 13 O -0.32 -6.45 10.09 -23.58 -0.24 -6.69 16 14 C -0.01 -0.21 6.71 -38.78 -0.26 -0.47 16 15 C -0.17 -3.79 8.96 -39.83 -0.36 -4.15 16 16 C -0.20 -4.88 9.74 -39.25 -0.38 -5.26 16 17 C 0.09 2.34 5.57 -106.80 -0.60 1.74 16 18 C -0.46 -12.32 9.04 -37.83 -0.34 -12.66 16 19 H 0.08 1.96 7.91 -52.48 -0.41 1.54 16 20 C 0.07 1.88 5.13 -17.34 -0.09 1.79 16 21 N -0.80 -20.73 10.96 55.54 0.61 -20.12 16 22 Si 0.91 18.69 29.60 -169.99 -5.03 13.66 16 23 H -0.26 -5.33 7.11 56.52 0.40 -4.93 16 24 H -0.27 -5.52 7.11 56.52 0.40 -5.11 16 25 H -0.28 -5.59 7.11 56.52 0.40 -5.19 16 26 C -0.13 -3.50 8.64 -39.25 -0.34 -3.84 16 27 C -0.12 -2.90 9.92 -39.83 -0.40 -3.30 16 28 H 0.03 0.21 8.14 -51.93 -0.42 -0.21 16 29 H 0.07 0.44 6.30 -51.93 -0.33 0.11 16 30 H 0.08 0.69 6.37 -51.93 -0.33 0.35 16 31 H 0.04 0.37 8.08 -51.93 -0.42 -0.05 16 32 H 0.09 0.71 7.89 -51.93 -0.41 0.30 16 33 H 0.12 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.11 0.52 6.47 -51.93 -0.34 0.18 16 35 H 0.41 0.59 9.10 45.56 0.41 1.00 16 36 H 0.05 0.44 8.12 -51.93 -0.42 0.02 16 37 H 0.08 0.71 7.93 -51.93 -0.41 0.30 16 38 H 0.37 3.82 9.05 45.56 0.41 4.23 16 39 H 0.06 0.80 7.66 -51.93 -0.40 0.40 16 40 H 0.05 0.77 7.64 -51.93 -0.40 0.37 16 41 H 0.09 1.78 6.27 -52.49 -0.33 1.45 16 42 H 0.09 2.16 8.06 -52.48 -0.42 1.74 16 43 H 0.28 6.58 8.30 -40.82 -0.34 6.25 16 44 H 0.13 3.36 6.16 -52.49 -0.32 3.04 16 45 H 0.10 2.22 8.06 -52.48 -0.42 1.80 16 LS Contribution 375.40 15.07 5.66 5.66 Total: -1.00 -32.71 375.40 -8.39 -41.10 By element: Atomic # 1 Polarization: 13.67 SS G_CDS: -4.85 Total: 8.83 kcal Atomic # 6 Polarization: -17.69 SS G_CDS: -2.03 Total: -19.72 kcal Atomic # 7 Polarization: -25.37 SS G_CDS: -0.54 Total: -25.91 kcal Atomic # 8 Polarization: -22.01 SS G_CDS: -1.61 Total: -23.62 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.66 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.71 -8.39 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604149442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.951 kcal (2) G-P(sol) polarization free energy of solvation -32.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -148.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -157.052 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds