Wall clock time and date at job start Tue Mar 31 2020 13:49:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46900 * 110.99619 * 2 1 4 4 C 1.52994 * 109.47550 * 293.95516 * 3 2 1 5 5 C 1.50706 * 109.47422 * 180.02562 * 4 3 2 6 6 O 1.20822 * 120.00024 * 359.97438 * 5 4 3 7 7 O 1.34230 * 119.99897 * 180.02562 * 5 4 3 8 8 C 1.46893 * 111.00418 * 123.95400 * 2 1 3 9 9 C 1.53006 * 109.46666 * 66.04751 * 8 2 1 10 10 H 1.09001 * 109.47051 * 304.99405 * 9 8 2 11 11 O 1.42893 * 109.47364 * 65.00147 * 9 8 2 12 12 C 1.53009 * 109.46831 * 184.99889 * 9 8 2 13 13 O 1.42897 * 109.46921 * 174.99581 * 12 9 8 14 14 C 1.35675 * 117.00125 * 180.02562 * 13 12 9 15 15 C 1.39313 * 119.81487 * 359.72422 * 14 13 12 16 16 C 1.36440 * 120.18365 * 179.75720 * 15 14 13 17 17 C 1.40831 * 119.81045 * 0.52339 * 16 15 14 18 18 C 1.41217 * 120.17778 * 179.71623 * 17 16 15 19 19 H 1.08004 * 120.00061 * 24.56411 * 18 17 16 20 20 C 1.39890 * 120.00032 * 204.56166 * 18 17 16 21 21 N 1.30886 * 119.99515 * 17.94615 * 20 18 17 22 22 Si 1.86792 * 120.00234 * 197.94283 * 20 18 17 23 23 H 1.48504 * 109.46983 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47133 * 119.99688 * 22 20 18 25 25 H 1.48495 * 109.47273 * 240.00309 * 22 20 18 26 26 C 1.40834 * 119.64137 * 359.73552 * 17 16 15 27 27 C 1.36430 * 119.81194 * 0.02562 * 26 17 16 28 28 H 1.09006 * 109.46768 * 296.04353 * 1 2 3 29 29 H 1.08997 * 109.47515 * 56.04039 * 1 2 3 30 30 H 1.09003 * 109.47131 * 176.04774 * 1 2 3 31 31 H 1.08995 * 109.47444 * 53.95992 * 3 2 1 32 32 H 1.09003 * 109.46935 * 173.95777 * 3 2 1 33 33 H 1.09003 * 109.47184 * 300.00397 * 4 3 2 34 34 H 1.08997 * 109.47119 * 59.99923 * 4 3 2 35 35 H 0.96696 * 116.99922 * 180.02562 * 7 5 4 36 36 H 1.09002 * 109.47379 * 306.04994 * 8 2 1 37 37 H 1.08998 * 109.47532 * 186.04146 * 8 2 1 38 38 H 0.96701 * 113.99898 * 59.99440 * 11 9 8 39 39 H 1.09003 * 109.46699 * 55.00020 * 12 9 8 40 40 H 1.08999 * 109.47088 * 295.00279 * 12 9 8 41 41 H 1.08000 * 119.90714 * 0.02972 * 15 14 13 42 42 H 1.08007 * 120.09092 * 180.25554 * 16 15 14 43 43 H 0.96999 * 119.99379 * 180.02562 * 21 20 18 44 44 H 1.08000 * 120.09009 * 179.97438 * 26 17 16 45 45 H 1.08004 * 119.90814 * 179.97438 * 27 26 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9953 1.3715 0.0000 4 6 1.6314 2.0575 -1.3182 5 6 2.1719 3.4643 -1.3184 6 8 2.7849 3.8761 -0.3621 7 8 1.9714 4.2602 -2.3806 8 6 1.9955 -0.7659 1.1375 9 6 1.6315 -2.2426 0.9701 10 1 0.5532 -2.3389 0.8432 11 8 2.2956 -2.7695 -0.1802 12 6 2.0702 -3.0200 2.2129 13 8 1.6274 -4.3746 2.1083 14 6 1.9361 -5.2047 3.1361 15 6 2.6591 -4.7207 4.2242 16 6 2.9693 -5.5476 5.2642 17 6 2.5660 -6.8965 5.2304 18 6 2.8881 -7.7607 6.2999 19 1 3.0731 -7.3562 7.2841 20 6 2.9676 -9.1406 6.0845 21 7 3.0954 -9.6067 4.8681 22 14 2.8914 -10.3179 7.5327 23 1 2.7458 -9.5446 8.7921 24 1 1.7269 -11.2253 7.3722 25 1 4.1403 -11.1196 7.5852 26 6 1.8401 -7.3790 4.1242 27 6 1.5338 -6.5378 3.0948 28 1 -0.3633 0.4512 0.9234 29 1 -0.3634 0.5740 -0.8523 30 1 -0.3633 -1.0252 -0.0708 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3445 0.1082 33 1 2.0657 1.5016 -2.1491 34 1 0.5471 2.0845 -1.4264 35 1 2.3373 5.1540 -2.3346 36 1 1.5612 -0.3873 2.0628 37 1 3.0798 -0.6611 1.1755 38 1 3.2601 -2.7165 -0.1362 39 1 1.6332 -2.5624 3.1006 40 1 3.1572 -2.9978 2.2904 41 1 2.9711 -3.6870 4.2465 42 1 3.5263 -5.1698 6.1089 43 1 3.1501 -10.5636 4.7188 44 1 1.5276 -8.4123 4.0907 45 1 0.9776 -6.9063 2.2455 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604149442.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:49:58 Heat of formation + Delta-G solvation = -181.363957 kcal Electronic energy + Delta-G solvation = -26094.331580 eV Core-core repulsion = 22075.946704 eV Total energy + Delta-G solvation = -4018.384876 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.29380 -40.67424 -39.46434 -38.17327 -37.25132 -36.87606 -35.17596 -32.99171 -31.86531 -31.08344 -30.61373 -28.16625 -27.02626 -26.21828 -23.99720 -22.81371 -22.37272 -21.99875 -21.40851 -19.26167 -19.13203 -18.71703 -17.87453 -17.57585 -17.27678 -17.20791 -17.02781 -16.28808 -16.04615 -15.77792 -15.68510 -15.38365 -15.03211 -14.73513 -14.39824 -14.08355 -14.05700 -13.94001 -13.83564 -13.47976 -13.11601 -13.00886 -12.79944 -12.64641 -12.60333 -12.56466 -12.52685 -12.38573 -11.99175 -11.80642 -11.68674 -11.65108 -11.57164 -11.21113 -10.93187 -10.86740 -9.56134 -9.34466 -8.92327 -8.59494 -6.22618 0.94745 1.02646 1.20258 1.40198 1.51133 1.55470 1.97680 2.23162 2.45737 2.72712 3.11481 3.54791 3.70398 3.74358 3.86729 3.99882 4.01024 4.04675 4.28388 4.29466 4.35913 4.40465 4.45940 4.50004 4.59290 4.61348 4.68593 4.85398 4.87117 4.91254 5.00203 5.06933 5.14502 5.22091 5.28732 5.58655 5.62240 5.64716 5.88574 5.93111 6.00283 6.06047 6.26615 6.56868 6.80667 6.90691 6.95264 6.98733 7.10516 8.37290 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.043139 B = 0.001729 C = 0.001696 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 648.914688 B =16190.909558 C =16509.477873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 N -0.537 5.537 3 C 0.069 3.931 4 C -0.107 4.107 5 C 0.488 3.512 6 O -0.557 6.557 7 O -0.514 6.514 8 C 0.034 3.966 9 C 0.126 3.874 10 H 0.098 0.902 11 O -0.558 6.558 12 C 0.028 3.972 13 O -0.330 6.330 14 C 0.001 3.999 15 C -0.166 4.166 16 C -0.207 4.207 17 C 0.053 3.947 18 C -0.499 4.499 19 H 0.076 0.924 20 C 0.033 3.967 21 N -0.832 5.832 22 Si 0.982 3.018 23 H -0.258 1.258 24 H -0.265 1.265 25 H -0.267 1.267 26 C -0.152 4.152 27 C -0.134 4.134 28 H 0.032 0.968 29 H 0.089 0.911 30 H 0.066 0.934 31 H 0.038 0.962 32 H 0.078 0.922 33 H 0.127 0.873 34 H 0.124 0.876 35 H 0.427 0.573 36 H 0.055 0.945 37 H 0.094 0.906 38 H 0.383 0.617 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.129 0.871 42 H 0.105 0.895 43 H 0.287 0.713 44 H 0.110 0.890 45 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.282 22.113 -11.748 25.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 N -0.261 5.261 3 C -0.059 4.059 4 C -0.145 4.145 5 C 0.332 3.668 6 O -0.448 6.448 7 O -0.327 6.327 8 C -0.094 4.094 9 C 0.066 3.934 10 H 0.116 0.884 11 O -0.364 6.364 12 C -0.048 4.048 13 O -0.246 6.246 14 C -0.043 4.043 15 C -0.184 4.184 16 C -0.227 4.227 17 C 0.051 3.949 18 C -0.529 4.529 19 H 0.094 0.906 20 C -0.181 4.181 21 N -0.459 5.459 22 Si 0.803 3.197 23 H -0.182 1.182 24 H -0.190 1.190 25 H -0.192 1.192 26 C -0.172 4.172 27 C -0.153 4.153 28 H 0.050 0.950 29 H 0.107 0.893 30 H 0.085 0.915 31 H 0.056 0.944 32 H 0.097 0.903 33 H 0.145 0.855 34 H 0.142 0.858 35 H 0.289 0.711 36 H 0.073 0.927 37 H 0.112 0.888 38 H 0.232 0.768 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.147 0.853 42 H 0.124 0.876 43 H 0.098 0.902 44 H 0.127 0.873 45 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.799 21.255 -12.450 24.924 hybrid contribution 0.763 0.457 1.778 1.988 sum -3.036 21.712 -10.673 24.383 Atomic orbital electron populations 1.22637 0.86592 1.02909 1.01633 1.61773 1.08790 1.12644 1.42851 1.21817 1.00926 0.87606 0.95564 1.21319 1.04632 0.87425 1.01088 1.23671 0.75403 0.88898 0.78872 1.90739 1.40706 1.76523 1.36839 1.84503 1.74297 1.30769 1.43178 1.22638 1.01884 0.92367 0.92539 1.21790 0.98255 0.90105 0.83214 0.88418 1.86598 1.24439 1.84575 1.40834 1.23518 0.99903 0.81382 1.00022 1.85876 1.76014 1.20839 1.41832 1.18688 1.05252 0.90532 0.89803 1.20703 1.02982 0.99803 0.94926 1.20801 1.06911 0.94954 1.00040 1.17972 0.90767 0.92639 0.93534 1.19734 1.44349 0.92164 0.96621 0.90597 1.26743 0.91246 1.00590 0.99504 1.69901 1.35866 1.16229 1.23859 0.85159 0.78850 0.77431 0.78244 1.18159 1.18999 1.19169 1.20895 1.01595 0.99076 0.95585 1.20012 1.04084 0.91598 0.99618 0.94970 0.89263 0.91479 0.94392 0.90328 0.85500 0.85786 0.71087 0.92677 0.88787 0.76808 0.91394 0.91737 0.85329 0.87642 0.90216 0.87263 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.14 9.13 127.69 1.17 1.30 16 2 N -0.54 -8.26 4.71 -922.47 -4.35 -12.60 16 3 C 0.07 0.94 4.25 86.30 0.37 1.31 16 4 C -0.11 -1.07 5.74 29.85 0.17 -0.90 16 5 C 0.49 6.38 8.33 71.24 0.59 6.98 16 6 O -0.56 -11.44 16.74 21.98 0.37 -11.07 16 7 O -0.51 -4.40 13.42 -51.42 -0.69 -5.09 16 8 C 0.03 0.56 4.60 86.31 0.40 0.96 16 9 C 0.13 2.84 3.20 30.60 0.10 2.94 16 10 H 0.10 2.36 6.34 -2.39 -0.02 2.35 16 11 O -0.56 -14.08 13.25 -144.34 -1.91 -15.99 16 12 C 0.03 0.78 4.36 71.99 0.31 1.09 16 13 O -0.33 -12.99 10.09 -85.29 -0.86 -13.85 16 14 C 0.00 0.05 6.71 22.79 0.15 0.21 16 15 C -0.17 -7.23 8.96 22.11 0.20 -7.03 16 16 C -0.21 -10.18 9.74 22.48 0.22 -9.96 16 17 C 0.05 2.91 5.57 -21.28 -0.12 2.79 16 18 C -0.50 -27.18 9.04 23.40 0.21 -26.97 16 19 H 0.08 3.97 7.91 -2.91 -0.02 3.95 16 20 C 0.03 1.68 5.13 85.23 0.44 2.12 16 21 N -0.83 -44.26 10.96 21.82 0.24 -44.02 16 22 Si 0.98 38.59 29.60 68.60 2.03 40.63 16 23 H -0.26 -9.89 7.11 99.48 0.71 -9.18 16 24 H -0.27 -10.03 7.11 99.48 0.71 -9.33 16 25 H -0.27 -10.04 7.11 99.48 0.71 -9.33 16 26 C -0.15 -8.24 8.64 22.48 0.19 -8.05 16 27 C -0.13 -6.66 9.92 22.11 0.22 -6.44 16 28 H 0.03 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.09 0.86 6.30 -2.39 -0.02 0.85 16 30 H 0.07 1.08 6.37 -2.39 -0.02 1.06 16 31 H 0.04 0.58 8.08 -2.39 -0.02 0.56 16 32 H 0.08 1.19 7.89 -2.39 -0.02 1.17 16 33 H 0.13 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.12 0.83 6.47 -2.39 -0.02 0.82 16 35 H 0.43 0.42 9.10 -74.06 -0.67 -0.26 16 36 H 0.06 0.86 8.12 -2.39 -0.02 0.84 16 37 H 0.09 1.37 7.93 -2.39 -0.02 1.35 16 38 H 0.38 7.20 9.05 -74.06 -0.67 6.53 16 39 H 0.07 1.75 7.66 -2.39 -0.02 1.73 16 40 H 0.06 1.67 7.64 -2.39 -0.02 1.65 16 41 H 0.13 4.58 6.27 -2.91 -0.02 4.56 16 42 H 0.11 4.80 8.06 -2.91 -0.02 4.78 16 43 H 0.29 13.78 8.30 -92.71 -0.77 13.01 16 44 H 0.11 6.15 6.16 -2.91 -0.02 6.13 16 45 H 0.11 4.94 8.06 -2.91 -0.02 4.92 16 Total: -1.00 -71.16 375.40 -0.86 -72.03 By element: Atomic # 1 Polarization: 29.92 SS G_CDS: -0.31 Total: 29.61 kcal Atomic # 6 Polarization: -44.26 SS G_CDS: 4.62 Total: -39.64 kcal Atomic # 7 Polarization: -52.52 SS G_CDS: -4.11 Total: -56.62 kcal Atomic # 8 Polarization: -42.91 SS G_CDS: -3.10 Total: -46.00 kcal Atomic # 14 Polarization: 38.59 SS G_CDS: 2.03 Total: 40.63 kcal Total: -71.16 -0.86 -72.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604149442.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -109.338 kcal (2) G-P(sol) polarization free energy of solvation -71.164 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -180.502 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.026 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.364 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds