Wall clock time and date at job start Tue Mar 31 2020 14:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 113.99923 * 2 1 4 4 C 1.52994 * 109.47515 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46823 * 66.80839 * 4 3 2 6 6 C 1.46896 * 110.99851 * 158.43317 * 5 4 3 7 7 C 1.52996 * 109.47113 * 297.00230 * 6 5 4 8 8 C 1.50709 * 109.47226 * 185.51387 * 7 6 5 9 9 O 1.20821 * 119.99667 * 0.02562 * 8 7 6 10 10 O 1.34225 * 119.99667 * 179.97438 * 8 7 6 11 11 C 1.46906 * 110.99757 * 282.38232 * 5 4 3 12 12 C 1.50699 * 109.46752 * 174.46052 * 11 5 4 13 13 C 1.38301 * 119.93404 * 90.00457 * 12 11 5 14 14 C 1.38099 * 120.07216 * 179.97438 * 13 12 11 15 15 C 1.38879 * 119.93065 * 0.02562 * 14 13 12 16 16 O 1.35744 * 120.06889 * 180.02562 * 15 14 13 17 17 C 1.34832 * 117.00336 * 5.51558 * 16 15 14 18 18 H 1.08008 * 119.99328 * 354.92747 * 17 16 15 19 19 C 1.38650 * 120.00389 * 174.92826 * 17 16 15 20 20 N 1.31558 * 119.99976 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00192 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47292 * 89.99448 * 21 19 17 23 23 H 1.48499 * 109.47284 * 209.99853 * 21 19 17 24 24 H 1.48502 * 109.46737 * 329.99726 * 21 19 17 25 25 C 1.38879 * 119.86244 * 0.27223 * 15 14 13 26 26 C 1.38109 * 119.92971 * 359.45364 * 25 15 14 27 27 H 1.09004 * 109.47298 * 60.00198 * 1 2 3 28 28 H 1.09003 * 109.46907 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47689 * 299.99871 * 1 2 3 30 30 H 1.09000 * 109.46837 * 59.99991 * 3 2 1 31 31 H 1.08998 * 109.47152 * 300.00429 * 3 2 1 32 32 H 1.09003 * 109.47230 * 306.81009 * 4 3 2 33 33 H 1.08999 * 109.47519 * 186.80229 * 4 3 2 34 34 H 1.09007 * 109.47665 * 57.00526 * 6 5 4 35 35 H 1.09008 * 109.47306 * 177.00531 * 6 5 4 36 36 H 1.08998 * 109.47176 * 305.51507 * 7 6 5 37 37 H 1.09000 * 109.47293 * 65.51741 * 7 6 5 38 38 H 0.96699 * 116.99659 * 180.02562 * 10 8 7 39 39 H 1.09004 * 109.46928 * 54.46254 * 11 5 4 40 40 H 1.08997 * 109.47344 * 294.46105 * 11 5 4 41 41 H 1.08006 * 119.95928 * 359.97438 * 13 12 11 42 42 H 1.07999 * 120.03350 * 179.97438 * 14 13 12 43 43 H 0.96997 * 119.99862 * 180.02562 * 20 19 17 44 44 H 1.07992 * 120.03922 * 179.72374 * 25 15 14 45 45 H 1.07993 * 119.96590 * 180.27331 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9809 0.6022 -1.2722 6 6 5.3890 0.9275 -1.5357 7 6 5.5440 2.4427 -1.6802 8 6 6.9595 2.7667 -2.0837 9 8 7.7617 1.8769 -2.2401 10 8 7.3285 4.0436 -2.2703 11 6 3.7638 -0.8506 -1.2908 12 6 4.1041 -1.3918 -2.6554 13 6 5.3925 -1.8135 -2.9290 14 6 5.7074 -2.3105 -4.1784 15 6 4.7288 -2.3861 -5.1609 16 8 5.0351 -2.8746 -6.3898 17 6 6.2757 -3.3753 -6.5578 18 1 7.0004 -3.3010 -5.7604 19 6 6.6210 -3.9854 -7.7540 20 7 5.7380 -4.0762 -8.7250 21 14 8.3395 -4.6796 -7.9864 22 1 8.3651 -6.0967 -7.5431 23 1 8.7145 -4.6030 -9.4213 24 1 9.3052 -3.8910 -7.1796 25 6 3.4374 -1.9561 -4.8851 26 6 3.1274 -1.4654 -3.6319 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8487 0.5425 0.8237 33 1 3.9780 2.1734 0.1224 34 1 6.0042 0.5767 -0.7070 35 1 5.7083 0.4401 -2.4570 36 1 4.8562 2.8071 -2.4432 37 1 5.3186 2.9234 -0.7283 38 1 8.2467 4.2019 -2.5289 39 1 2.7191 -1.0647 -1.0651 40 1 4.4012 -1.3228 -0.5433 41 1 6.1533 -1.7541 -2.1646 42 1 6.7139 -2.6393 -4.3915 43 1 5.9795 -4.5034 -9.5617 44 1 2.6752 -2.0094 -5.6483 45 1 2.1223 -1.1349 -3.4154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001604604868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:24 Heat of formation + Delta-G solvation = -130.777037 kcal Electronic energy + Delta-G solvation = -27422.718017 eV Core-core repulsion = 23406.526755 eV Total energy + Delta-G solvation = -4016.191263 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -40.39081 -39.24871 -38.47137 -37.26319 -36.30277 -35.87913 -32.33510 -31.88785 -30.82697 -30.04646 -28.45067 -26.44294 -25.60491 -24.92929 -23.43511 -21.95723 -21.78668 -20.53424 -20.02635 -18.22513 -17.88910 -17.07032 -16.75850 -16.52333 -16.35191 -16.30124 -15.45604 -14.87756 -14.72448 -14.49263 -14.43911 -13.99943 -13.81723 -13.52329 -13.48150 -13.10523 -12.90660 -12.63512 -12.54530 -12.26185 -11.87540 -11.76795 -11.66309 -11.58074 -11.44403 -11.25970 -11.12583 -11.04101 -10.67803 -10.64984 -10.53374 -10.38720 -10.29938 -9.69525 -9.24894 -8.77123 -8.28275 -8.04790 -7.08118 -6.39181 -3.97545 2.11775 2.31700 2.36623 2.87317 3.16995 3.17904 3.22606 3.63884 4.02070 4.04476 4.62096 4.73067 4.85868 4.89716 5.08756 5.09305 5.16388 5.18299 5.22997 5.28683 5.33680 5.38363 5.44922 5.52070 5.57698 5.62697 5.70022 5.78198 5.93176 5.96246 6.06352 6.30345 6.32577 6.38773 6.53161 6.81838 6.96193 7.00032 7.09339 7.14249 7.20858 7.37291 7.51252 7.54047 7.77921 7.93084 8.06645 9.06961 9.78192 10.79100 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.003452 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.149508 B = 8108.467482 C =10167.378939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 O -0.384 6.384 3 C 0.067 3.933 4 C 0.046 3.954 5 N -0.528 5.528 6 C 0.057 3.943 7 C -0.111 4.111 8 C 0.478 3.522 9 O -0.509 6.509 10 O -0.521 6.521 11 C 0.110 3.890 12 C -0.180 4.180 13 C -0.066 4.066 14 C -0.233 4.233 15 C 0.155 3.845 16 O -0.180 6.180 17 C -0.390 4.390 18 H 0.091 0.909 19 C 0.039 3.961 20 N -0.864 5.864 21 Si 0.939 3.061 22 H -0.273 1.273 23 H -0.278 1.278 24 H -0.268 1.268 25 C -0.196 4.196 26 C -0.050 4.050 27 H 0.042 0.958 28 H 0.084 0.916 29 H 0.036 0.964 30 H 0.048 0.952 31 H 0.059 0.941 32 H 0.044 0.956 33 H 0.086 0.914 34 H 0.038 0.962 35 H 0.102 0.898 36 H 0.116 0.884 37 H 0.100 0.900 38 H 0.409 0.591 39 H 0.104 0.896 40 H 0.028 0.972 41 H 0.102 0.898 42 H 0.125 0.875 43 H 0.269 0.731 44 H 0.115 0.885 45 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.018 14.146 18.337 23.697 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.303 6.303 3 C -0.010 4.010 4 C -0.082 4.082 5 N -0.252 5.252 6 C -0.070 4.070 7 C -0.149 4.149 8 C 0.319 3.681 9 O -0.396 6.396 10 O -0.334 6.334 11 C -0.016 4.016 12 C -0.181 4.181 13 C -0.085 4.085 14 C -0.252 4.252 15 C 0.102 3.898 16 O -0.083 6.083 17 C -0.466 4.466 18 H 0.109 0.891 19 C -0.165 4.165 20 N -0.500 5.500 21 Si 0.764 3.236 22 H -0.199 1.199 23 H -0.203 1.203 24 H -0.192 1.192 25 C -0.216 4.216 26 C -0.069 4.069 27 H 0.060 0.940 28 H 0.102 0.898 29 H 0.054 0.946 30 H 0.066 0.934 31 H 0.078 0.922 32 H 0.063 0.937 33 H 0.104 0.896 34 H 0.056 0.944 35 H 0.120 0.880 36 H 0.134 0.866 37 H 0.118 0.882 38 H 0.268 0.732 39 H 0.122 0.878 40 H 0.046 0.954 41 H 0.120 0.880 42 H 0.142 0.858 43 H 0.079 0.921 44 H 0.133 0.867 45 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.513 13.744 17.588 22.992 hybrid contribution 1.888 -0.292 0.330 1.938 sum -3.625 13.453 17.918 22.697 Atomic orbital electron populations 1.22716 0.81470 1.02695 0.99676 1.87913 1.19360 1.27818 1.95199 1.22579 0.93319 0.85001 1.00085 1.22270 0.94016 1.00221 0.91663 1.62075 1.18421 1.13514 1.31203 1.22014 0.88955 0.92559 1.03509 1.21395 0.90092 0.98977 1.04451 1.23498 0.91503 0.79822 0.73268 1.90774 1.54032 1.47835 1.46930 1.84520 1.36997 1.30285 1.81555 1.21084 1.02540 0.84446 0.93539 1.19150 0.94183 1.08813 0.95940 1.20644 0.95133 0.96921 0.95769 1.21121 1.00355 1.09454 0.94311 1.19401 0.92903 0.91852 0.85666 1.83973 1.33330 1.66719 1.24307 1.21324 0.86704 1.37018 1.01585 0.89138 1.25265 0.99802 0.96747 0.94705 1.70041 1.34234 1.41031 1.04675 0.85734 0.80489 0.79308 0.78053 1.19907 1.20298 1.19204 1.20211 0.94713 1.08891 0.97762 1.20444 0.97930 0.96717 0.91834 0.93982 0.89766 0.94552 0.93422 0.92231 0.93743 0.89626 0.94399 0.87958 0.86591 0.88158 0.73213 0.87833 0.95385 0.87961 0.85761 0.92118 0.86713 0.87087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.25 11.01 101.05 1.11 1.36 16 2 O -0.38 -4.09 7.91 -35.23 -0.28 -4.37 16 3 C 0.07 0.59 6.26 37.15 0.23 0.82 16 4 C 0.05 0.43 5.41 -3.82 -0.02 0.41 16 5 N -0.53 -6.49 4.47 -236.06 -1.06 -7.55 16 6 C 0.06 0.73 3.94 -3.83 -0.02 0.71 16 7 C -0.11 -1.10 5.59 -27.88 -0.16 -1.26 16 8 C 0.48 5.55 8.33 36.01 0.30 5.85 16 9 O -0.51 -7.93 16.67 -18.75 -0.31 -8.24 16 10 O -0.52 -4.63 13.42 -39.24 -0.53 -5.15 16 11 C 0.11 1.57 4.88 -4.97 -0.02 1.55 16 12 C -0.18 -3.17 4.76 -104.57 -0.50 -3.66 16 13 C -0.07 -1.27 7.74 -39.61 -0.31 -1.58 16 14 C -0.23 -5.30 9.17 -39.40 -0.36 -5.66 16 15 C 0.16 3.88 6.65 -39.11 -0.26 3.62 16 16 O -0.18 -5.28 9.76 0.06 0.00 -5.28 16 17 C -0.39 -11.23 9.49 30.88 0.29 -10.94 16 18 H 0.09 2.44 5.20 -52.48 -0.27 2.17 16 19 C 0.04 1.09 5.49 -17.52 -0.10 0.99 16 20 N -0.86 -25.88 13.67 55.48 0.76 -25.13 16 21 Si 0.94 21.15 29.55 -169.99 -5.02 16.12 16 22 H -0.27 -5.99 7.11 56.52 0.40 -5.59 16 23 H -0.28 -6.10 7.11 56.52 0.40 -5.69 16 24 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 25 C -0.20 -4.28 9.99 -39.39 -0.39 -4.67 16 26 C -0.05 -0.93 9.69 -39.60 -0.38 -1.32 16 27 H 0.04 0.32 8.14 -51.93 -0.42 -0.11 16 28 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.04 0.24 8.14 -51.93 -0.42 -0.19 16 30 H 0.05 0.33 8.14 -51.93 -0.42 -0.10 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.04 0.43 7.97 -51.93 -0.41 0.02 16 33 H 0.09 0.60 5.77 -51.93 -0.30 0.30 16 34 H 0.04 0.48 8.14 -51.92 -0.42 0.06 16 35 H 0.10 1.65 5.40 -51.92 -0.28 1.37 16 36 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.10 0.72 6.36 -51.93 -0.33 0.39 16 38 H 0.41 2.09 9.10 45.56 0.41 2.50 16 39 H 0.10 1.48 5.27 -51.93 -0.27 1.21 16 40 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 41 H 0.10 1.78 8.00 -52.48 -0.42 1.36 16 42 H 0.12 2.87 5.64 -52.49 -0.30 2.58 16 43 H 0.27 7.38 8.31 -40.82 -0.34 7.04 16 44 H 0.11 2.42 8.06 -52.49 -0.42 2.00 16 45 H 0.11 1.78 8.06 -52.49 -0.42 1.36 16 LS Contribution 373.39 15.07 5.63 5.63 Total: -1.00 -34.58 373.39 -6.92 -41.50 By element: Atomic # 1 Polarization: 11.76 SS G_CDS: -5.53 Total: 6.23 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: -0.58 Total: -13.77 kcal Atomic # 7 Polarization: -32.37 SS G_CDS: -0.30 Total: -32.67 kcal Atomic # 8 Polarization: -21.92 SS G_CDS: -1.12 Total: -23.04 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.63 Total: 5.63 kcal Total: -34.58 -6.92 -41.50 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604604868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.273 kcal (2) G-P(sol) polarization free energy of solvation -34.584 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.857 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.504 kcal (6) G-S(sol) free energy of system = (1) + (5) -130.777 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds