Wall clock time and date at job start Tue Mar 31 2020 14:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.42905 * 113.99923 * 2 1 4 4 C 1.52994 * 109.47515 * 179.97438 * 3 2 1 5 5 N 1.46906 * 109.46823 * 66.80839 * 4 3 2 6 6 C 1.46896 * 110.99851 * 158.43317 * 5 4 3 7 7 C 1.52996 * 109.47113 * 297.00230 * 6 5 4 8 8 C 1.50709 * 109.47226 * 185.51387 * 7 6 5 9 9 O 1.20821 * 119.99667 * 0.02562 * 8 7 6 10 10 O 1.34225 * 119.99667 * 179.97438 * 8 7 6 11 11 C 1.46906 * 110.99757 * 282.38232 * 5 4 3 12 12 C 1.50699 * 109.46752 * 174.46052 * 11 5 4 13 13 C 1.38301 * 119.93404 * 90.00457 * 12 11 5 14 14 C 1.38099 * 120.07216 * 179.97438 * 13 12 11 15 15 C 1.38879 * 119.93065 * 0.02562 * 14 13 12 16 16 O 1.35744 * 120.06889 * 180.02562 * 15 14 13 17 17 C 1.34832 * 117.00336 * 5.51558 * 16 15 14 18 18 H 1.08008 * 119.99328 * 354.92747 * 17 16 15 19 19 C 1.38650 * 120.00389 * 174.92826 * 17 16 15 20 20 N 1.31558 * 119.99976 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00192 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47292 * 89.99448 * 21 19 17 23 23 H 1.48499 * 109.47284 * 209.99853 * 21 19 17 24 24 H 1.48502 * 109.46737 * 329.99726 * 21 19 17 25 25 C 1.38879 * 119.86244 * 0.27223 * 15 14 13 26 26 C 1.38109 * 119.92971 * 359.45364 * 25 15 14 27 27 H 1.09004 * 109.47298 * 60.00198 * 1 2 3 28 28 H 1.09003 * 109.46907 * 179.97438 * 1 2 3 29 29 H 1.08999 * 109.47689 * 299.99871 * 1 2 3 30 30 H 1.09000 * 109.46837 * 59.99991 * 3 2 1 31 31 H 1.08998 * 109.47152 * 300.00429 * 3 2 1 32 32 H 1.09003 * 109.47230 * 306.81009 * 4 3 2 33 33 H 1.08999 * 109.47519 * 186.80229 * 4 3 2 34 34 H 1.09007 * 109.47665 * 57.00526 * 6 5 4 35 35 H 1.09008 * 109.47306 * 177.00531 * 6 5 4 36 36 H 1.08998 * 109.47176 * 305.51507 * 7 6 5 37 37 H 1.09000 * 109.47293 * 65.51741 * 7 6 5 38 38 H 0.96699 * 116.99659 * 180.02562 * 10 8 7 39 39 H 1.09004 * 109.46928 * 54.46254 * 11 5 4 40 40 H 1.08997 * 109.47344 * 294.46105 * 11 5 4 41 41 H 1.08006 * 119.95928 * 359.97438 * 13 12 11 42 42 H 1.07999 * 120.03350 * 179.97438 * 14 13 12 43 43 H 0.96997 * 119.99862 * 180.02562 * 20 19 17 44 44 H 1.07992 * 120.03922 * 179.72374 * 25 15 14 45 45 H 1.07993 * 119.96590 * 180.27331 * 26 25 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5353 1.1848 0.0006 5 7 3.9809 0.6022 -1.2722 6 6 5.3890 0.9275 -1.5357 7 6 5.5440 2.4427 -1.6802 8 6 6.9595 2.7667 -2.0837 9 8 7.7617 1.8769 -2.2401 10 8 7.3285 4.0436 -2.2703 11 6 3.7638 -0.8506 -1.2908 12 6 4.1041 -1.3918 -2.6554 13 6 5.3925 -1.8135 -2.9290 14 6 5.7074 -2.3105 -4.1784 15 6 4.7288 -2.3861 -5.1609 16 8 5.0351 -2.8746 -6.3898 17 6 6.2757 -3.3753 -6.5578 18 1 7.0004 -3.3010 -5.7604 19 6 6.6210 -3.9854 -7.7540 20 7 5.7380 -4.0762 -8.7250 21 14 8.3395 -4.6796 -7.9864 22 1 8.3651 -6.0967 -7.5431 23 1 8.7145 -4.6030 -9.4213 24 1 9.3052 -3.8910 -7.1796 25 6 3.4374 -1.9561 -4.8851 26 6 3.1274 -1.4654 -3.6319 27 1 -0.3634 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 1.6885 1.8464 0.8900 31 1 1.6885 1.8464 -0.8899 32 1 3.8487 0.5425 0.8237 33 1 3.9780 2.1734 0.1224 34 1 6.0042 0.5767 -0.7070 35 1 5.7083 0.4401 -2.4570 36 1 4.8562 2.8071 -2.4432 37 1 5.3186 2.9234 -0.7283 38 1 8.2467 4.2019 -2.5289 39 1 2.7191 -1.0647 -1.0651 40 1 4.4012 -1.3228 -0.5433 41 1 6.1533 -1.7541 -2.1646 42 1 6.7139 -2.6393 -4.3915 43 1 5.9795 -4.5034 -9.5617 44 1 2.6752 -2.0094 -5.6483 45 1 2.1223 -1.1349 -3.4154 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001604604868.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:08:24 Heat of formation + Delta-G solvation = -156.147983 kcal Electronic energy + Delta-G solvation = -27423.818184 eV Core-core repulsion = 23406.526755 eV Total energy + Delta-G solvation = -4017.291429 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.32383 -40.83338 -39.60916 -38.41186 -37.44763 -36.99224 -34.34076 -32.89958 -32.06731 -31.68736 -29.58896 -27.58794 -27.00171 -26.27432 -24.44686 -23.57233 -22.78542 -21.92116 -21.09873 -19.82464 -19.11301 -18.78098 -17.85084 -17.33737 -17.17542 -17.05040 -16.46962 -16.40468 -16.15263 -16.02452 -15.60235 -15.35576 -15.17861 -15.03810 -14.71175 -14.35267 -14.19078 -13.99791 -13.71112 -13.55469 -13.29811 -12.95839 -12.67796 -12.58265 -12.54623 -12.48599 -12.29651 -12.20060 -12.15258 -12.12908 -11.96871 -11.65327 -11.45051 -11.17205 -10.79169 -10.37889 -9.74279 -9.27720 -8.86366 -8.47809 -6.15628 0.61530 0.69588 1.23205 1.32804 1.42153 1.50212 2.08165 2.16926 2.77696 3.00781 3.07352 3.35868 3.53719 3.77253 4.02547 4.05630 4.06382 4.20442 4.29286 4.39415 4.41946 4.53137 4.53744 4.57933 4.64472 4.68080 4.72922 4.80027 4.85057 4.88786 4.96942 5.01907 5.07964 5.10544 5.14987 5.21418 5.38154 5.60121 5.64336 5.72538 5.83882 6.02966 6.09597 6.18248 6.27678 6.43099 6.97042 7.00240 7.78341 8.75530 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.010717 B = 0.003452 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2612.149508 B = 8108.467482 C =10167.378939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.410 6.410 3 C 0.065 3.935 4 C 0.046 3.954 5 N -0.530 5.530 6 C 0.059 3.941 7 C -0.104 4.104 8 C 0.481 3.519 9 O -0.558 6.558 10 O -0.512 6.512 11 C 0.115 3.885 12 C -0.151 4.151 13 C -0.063 4.063 14 C -0.244 4.244 15 C 0.115 3.885 16 O -0.232 6.232 17 C -0.414 4.414 18 H 0.096 0.904 19 C -0.021 4.021 20 N -0.919 5.919 21 Si 1.017 2.983 22 H -0.262 1.262 23 H -0.268 1.268 24 H -0.257 1.257 25 C -0.203 4.203 26 C -0.042 4.042 27 H 0.043 0.957 28 H 0.085 0.915 29 H 0.051 0.949 30 H 0.072 0.928 31 H 0.058 0.942 32 H 0.044 0.956 33 H 0.114 0.886 34 H 0.037 0.963 35 H 0.063 0.937 36 H 0.124 0.876 37 H 0.138 0.862 38 H 0.426 0.574 39 H 0.113 0.887 40 H 0.033 0.967 41 H 0.123 0.877 42 H 0.111 0.889 43 H 0.273 0.727 44 H 0.114 0.886 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.433 16.191 21.541 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.011 4.011 4 C -0.081 4.081 5 N -0.254 5.254 6 C -0.069 4.069 7 C -0.142 4.142 8 C 0.325 3.675 9 O -0.449 6.449 10 O -0.326 6.326 11 C -0.011 4.011 12 C -0.152 4.152 13 C -0.082 4.082 14 C -0.263 4.263 15 C 0.064 3.936 16 O -0.139 6.139 17 C -0.490 4.490 18 H 0.114 0.886 19 C -0.219 4.219 20 N -0.558 5.558 21 Si 0.836 3.164 22 H -0.187 1.187 23 H -0.192 1.192 24 H -0.181 1.181 25 C -0.223 4.223 26 C -0.060 4.060 27 H 0.062 0.938 28 H 0.104 0.896 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.077 0.923 32 H 0.063 0.937 33 H 0.132 0.868 34 H 0.055 0.945 35 H 0.081 0.919 36 H 0.142 0.858 37 H 0.155 0.845 38 H 0.287 0.713 39 H 0.130 0.870 40 H 0.051 0.949 41 H 0.141 0.859 42 H 0.129 0.871 43 H 0.082 0.918 44 H 0.132 0.868 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -5.949 15.851 20.848 26.857 hybrid contribution 1.849 -0.698 -0.352 2.007 sum -4.101 15.153 20.496 25.817 Atomic orbital electron populations 1.22816 0.80334 1.03141 1.00531 1.87842 1.20695 1.29022 1.95393 1.22673 0.92665 0.84567 1.01227 1.22439 0.94665 1.01334 0.89690 1.62009 1.18070 1.11782 1.33558 1.21883 0.89091 0.94379 1.01514 1.21384 0.89111 0.97104 1.06580 1.23827 0.91758 0.79881 0.72014 1.90768 1.55514 1.49280 1.49299 1.84480 1.38526 1.28659 1.80892 1.21041 1.03144 0.86095 0.90842 1.19645 0.92937 1.05265 0.97387 1.20867 0.96591 0.95968 0.94735 1.21164 0.99479 1.10239 0.95433 1.19912 0.94747 0.93465 0.85427 1.83932 1.33848 1.69370 1.26742 1.21773 0.87174 1.37708 1.02364 0.88625 1.26547 1.04627 0.96772 0.93937 1.70178 1.36941 1.43133 1.05529 0.84621 0.74550 0.78795 0.78449 1.18652 1.19243 1.18099 1.20470 0.93621 1.08858 0.99316 1.20801 0.99715 0.95216 0.90310 0.93790 0.89643 0.93020 0.91007 0.92333 0.93744 0.86807 0.94474 0.91873 0.85814 0.84451 0.71280 0.86950 0.94891 0.85920 0.87104 0.91799 0.86771 0.83629 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.36 11.01 113.37 1.25 1.61 16 2 O -0.41 -7.28 7.91 -148.98 -1.18 -8.46 16 3 C 0.07 0.87 6.26 71.98 0.45 1.32 16 4 C 0.05 0.65 5.41 86.30 0.47 1.12 16 5 N -0.53 -11.24 4.47 -900.77 -4.03 -15.27 16 6 C 0.06 1.37 3.94 86.30 0.34 1.71 16 7 C -0.10 -1.73 5.59 29.85 0.17 -1.57 16 8 C 0.48 10.28 8.33 71.24 0.59 10.87 16 9 O -0.56 -17.15 16.67 21.98 0.37 -16.78 16 10 O -0.51 -7.81 13.42 -51.37 -0.69 -8.50 16 11 C 0.12 2.96 4.88 85.56 0.42 3.37 16 12 C -0.15 -5.08 4.76 -19.83 -0.09 -5.17 16 13 C -0.06 -2.41 7.74 22.25 0.17 -2.24 16 14 C -0.24 -11.54 9.17 22.39 0.21 -11.33 16 15 C 0.11 6.03 6.65 22.58 0.15 6.18 16 16 O -0.23 -14.59 9.76 -22.69 -0.22 -14.81 16 17 C -0.41 -25.28 9.49 67.92 0.64 -24.64 16 18 H 0.10 5.47 5.20 -2.91 -0.02 5.46 16 19 C -0.02 -1.26 5.49 84.83 0.47 -0.79 16 20 N -0.92 -57.93 13.67 21.61 0.30 -57.64 16 21 Si 1.02 44.73 29.55 68.60 2.03 46.76 16 22 H -0.26 -10.90 7.11 99.48 0.71 -10.19 16 23 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 24 H -0.26 -10.70 7.11 99.48 0.71 -10.00 16 25 C -0.20 -9.07 9.99 22.39 0.22 -8.85 16 26 C -0.04 -1.49 9.69 22.26 0.22 -1.28 16 27 H 0.04 0.54 8.14 -2.38 -0.02 0.52 16 28 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.05 0.50 8.14 -2.39 -0.02 0.48 16 30 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 31 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 32 H 0.04 0.68 7.97 -2.39 -0.02 0.66 16 33 H 0.11 0.98 5.77 -2.39 -0.01 0.97 16 34 H 0.04 0.86 8.14 -2.38 -0.02 0.84 16 35 H 0.06 1.98 5.40 -2.38 -0.01 1.97 16 36 H 0.12 1.94 8.14 -2.39 -0.02 1.92 16 37 H 0.14 1.27 6.36 -2.39 -0.02 1.25 16 38 H 0.43 3.47 9.10 -74.06 -0.67 2.79 16 39 H 0.11 2.81 5.27 -2.38 -0.01 2.80 16 40 H 0.03 0.84 8.08 -2.39 -0.02 0.82 16 41 H 0.12 4.17 8.00 -2.91 -0.02 4.15 16 42 H 0.11 5.44 5.64 -2.91 -0.02 5.42 16 43 H 0.27 15.69 8.31 -92.71 -0.77 14.92 16 44 H 0.11 5.00 8.06 -2.91 -0.02 4.97 16 45 H 0.15 4.20 8.06 -2.91 -0.02 4.18 16 Total: -1.00 -81.11 373.39 2.58 -78.52 By element: Atomic # 1 Polarization: 25.52 SS G_CDS: 0.35 Total: 25.86 kcal Atomic # 6 Polarization: -35.35 SS G_CDS: 5.67 Total: -29.68 kcal Atomic # 7 Polarization: -69.18 SS G_CDS: -3.73 Total: -72.91 kcal Atomic # 8 Polarization: -46.83 SS G_CDS: -1.72 Total: -48.56 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 2.03 Total: 46.76 kcal Total: -81.11 2.58 -78.52 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001604604868.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.624 kcal (2) G-P(sol) polarization free energy of solvation -81.106 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -158.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.582 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.524 kcal (6) G-S(sol) free energy of system = (1) + (5) -156.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds