Wall clock time and date at job start Tue Mar 31 2020 13:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47678 * 2 1 4 4 C 1.42892 * 114.00327 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47330 * 74.99884 * 4 3 2 6 6 C 1.35899 * 116.99852 * 74.99641 * 5 4 3 7 7 C 1.38735 * 120.05577 * 180.02562 * 6 5 4 8 8 C 1.38144 * 119.94082 * 180.02562 * 7 6 5 9 9 C 1.38263 * 120.06124 * 0.02679 * 8 7 6 10 10 C 1.50697 * 119.94801 * 179.97438 * 9 8 7 11 11 N 1.46505 * 109.46605 * 95.28528 * 10 9 8 12 12 C 1.36937 * 120.00185 * 265.71817 * 11 10 9 13 13 H 1.07997 * 120.00073 * 185.46867 * 12 11 10 14 14 C 1.38808 * 119.99737 * 5.46762 * 12 11 10 15 15 N 1.31612 * 120.00342 * 354.99552 * 14 12 11 16 16 Si 1.86799 * 119.99653 * 174.99523 * 14 12 11 17 17 H 1.48501 * 109.47652 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46973 * 120.00287 * 16 14 12 19 19 H 1.48499 * 109.47531 * 239.99849 * 16 14 12 20 20 C 1.46503 * 119.99899 * 85.44596 * 11 10 9 21 21 C 1.53005 * 109.46913 * 89.99367 * 20 11 10 22 22 C 1.50705 * 109.46958 * 179.97438 * 21 20 11 23 23 O 1.20827 * 119.99965 * 0.02562 * 22 21 20 24 24 O 1.34220 * 119.99866 * 180.02562 * 22 21 20 25 25 C 1.38268 * 120.10732 * 0.25044 * 9 8 7 26 26 C 1.38141 * 120.05913 * 359.44817 * 25 9 8 27 27 H 1.08996 * 109.46808 * 300.00067 * 1 2 3 28 28 H 1.09002 * 109.46856 * 59.99912 * 1 2 3 29 29 H 1.08993 * 109.46952 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47139 * 239.99845 * 2 1 3 31 31 H 1.09002 * 109.46856 * 120.00088 * 2 1 3 32 32 H 1.08999 * 109.47274 * 314.99970 * 4 3 2 33 33 H 1.09000 * 109.47488 * 195.00141 * 4 3 2 34 34 H 1.07997 * 120.02850 * 0.02562 * 7 6 5 35 35 H 1.08002 * 119.97005 * 179.97438 * 8 7 6 36 36 H 1.09004 * 109.47158 * 335.29350 * 10 9 8 37 37 H 1.08996 * 109.47764 * 215.28269 * 10 9 8 38 38 H 0.97003 * 120.00243 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.47367 * 209.99750 * 20 11 10 40 40 H 1.09005 * 109.46985 * 329.99989 * 20 11 10 41 41 H 1.08996 * 109.47670 * 299.99925 * 21 20 11 42 42 H 1.09005 * 109.46787 * 60.00501 * 21 20 11 43 43 H 0.96707 * 116.99823 * 180.02562 * 24 22 21 44 44 H 1.08009 * 119.97171 * 179.70566 * 25 9 8 45 45 H 1.07998 * 120.03482 * 180.25417 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 8 3.9339 1.1498 -1.3005 6 6 3.7696 2.0917 -2.2662 7 6 4.2334 1.8565 -3.5524 8 6 4.0656 2.8159 -4.5321 9 6 3.4365 4.0099 -4.2317 10 6 3.2553 5.0549 -5.3023 11 7 1.9256 4.9149 -5.9011 12 6 1.7619 4.1704 -7.0388 13 1 0.8005 4.1390 -7.5298 14 6 2.8316 3.4564 -7.5608 15 7 4.0263 3.5720 -7.0208 16 14 2.5756 2.3313 -9.0298 17 1 1.1512 2.3784 -9.4472 18 1 3.4355 2.7814 -10.1538 19 1 2.9368 0.9400 -8.6568 20 6 0.7699 5.5664 -5.2795 21 6 0.6030 6.9718 -5.8609 22 6 -0.5861 7.6417 -5.2218 23 8 -1.2333 7.0555 -4.3868 24 8 -0.9262 8.8896 -5.5804 25 6 2.9785 4.2490 -2.9492 26 6 3.1382 3.2905 -1.9674 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8502 0.7644 0.7275 33 1 3.7148 2.4783 0.2665 34 1 4.7252 0.9242 -3.7875 35 1 4.4268 2.6334 -5.5335 36 1 4.0160 4.9225 -6.0717 37 1 3.3527 6.0471 -4.8618 38 1 4.7738 3.0727 -7.3853 39 1 -0.1279 4.9815 -5.4792 40 1 0.9270 5.6348 -4.2030 41 1 1.5008 7.5567 -5.6611 42 1 0.4459 6.9033 -6.9374 43 1 -1.6962 9.2777 -5.1426 44 1 2.4916 5.1845 -2.7158 45 1 2.7767 3.4760 -0.9668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001605641239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:47 Heat of formation + Delta-G solvation = -117.025918 kcal Electronic energy + Delta-G solvation = -27787.401940 eV Core-core repulsion = 23771.806971 eV Total energy + Delta-G solvation = -4015.594969 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -39.91373 -39.71173 -37.93823 -36.68353 -35.94005 -35.28741 -32.42008 -31.35040 -30.46851 -29.80607 -29.10603 -26.13842 -25.09372 -24.60538 -22.84949 -21.85552 -21.65259 -20.48529 -19.57527 -17.91874 -17.81699 -17.07683 -16.80185 -16.33354 -16.16854 -15.69413 -15.06046 -14.99609 -14.71658 -14.45207 -13.67781 -13.58956 -13.36845 -13.14256 -13.06354 -12.79543 -12.63326 -12.37331 -12.31858 -11.91210 -11.86093 -11.56871 -11.35700 -11.26308 -11.04737 -10.85196 -10.83010 -10.50003 -10.42635 -10.27644 -10.21191 -10.10057 -9.91675 -9.88319 -9.41995 -8.78393 -7.96895 -7.20980 -6.96106 -5.57977 -3.32711 2.34954 2.43651 2.53311 3.31768 3.37096 3.41380 3.43386 3.60140 3.71611 4.38330 4.78836 4.93466 5.05499 5.14624 5.20745 5.24385 5.35255 5.46750 5.61780 5.63222 5.64126 5.68735 5.78306 5.88661 6.00149 6.07323 6.19773 6.24511 6.36081 6.44901 6.54673 6.68550 6.69979 6.84845 6.95436 6.97031 7.14690 7.22846 7.48691 7.53950 7.78234 7.92549 8.04959 8.17699 8.22540 8.56936 9.22602 9.74997 10.10547 11.11069 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008488 B = 0.004366 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3298.010927 B = 6411.953956 C = 8359.432210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.057 3.943 3 O -0.393 6.393 4 C 0.216 3.784 5 O -0.340 6.340 6 C 0.096 3.904 7 C -0.173 4.173 8 C -0.061 4.061 9 C -0.087 4.087 10 C 0.142 3.858 11 N -0.588 5.588 12 C -0.209 4.209 13 H 0.078 0.922 14 C -0.022 4.022 15 N -0.907 5.907 16 Si 0.920 3.080 17 H -0.282 1.282 18 H -0.290 1.290 19 H -0.289 1.289 20 C 0.158 3.842 21 C -0.134 4.134 22 C 0.479 3.521 23 O -0.523 6.523 24 O -0.525 6.525 25 C -0.099 4.099 26 C -0.211 4.211 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.094 0.906 33 H 0.097 0.903 34 H 0.110 0.890 35 H 0.182 0.818 36 H 0.178 0.822 37 H 0.004 0.996 38 H 0.253 0.747 39 H 0.054 0.946 40 H 0.050 0.950 41 H 0.098 0.902 42 H 0.104 0.896 43 H 0.400 0.600 44 H 0.104 0.896 45 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.006 0.378 9.565 9.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.019 4.019 3 O -0.313 6.313 4 C 0.103 3.897 5 O -0.257 6.257 6 C 0.053 3.947 7 C -0.192 4.192 8 C -0.079 4.079 9 C -0.090 4.090 10 C 0.018 3.982 11 N -0.306 5.306 12 C -0.337 4.337 13 H 0.096 0.904 14 C -0.213 4.213 15 N -0.561 5.561 16 Si 0.751 3.249 17 H -0.207 1.207 18 H -0.217 1.217 19 H -0.215 1.215 20 C 0.030 3.970 21 C -0.175 4.175 22 C 0.322 3.678 23 O -0.411 6.411 24 O -0.336 6.336 25 C -0.118 4.118 26 C -0.230 4.230 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.088 0.912 30 H 0.074 0.926 31 H 0.064 0.936 32 H 0.112 0.888 33 H 0.115 0.885 34 H 0.128 0.872 35 H 0.198 0.802 36 H 0.193 0.807 37 H 0.023 0.977 38 H 0.066 0.934 39 H 0.072 0.928 40 H 0.069 0.931 41 H 0.116 0.884 42 H 0.122 0.878 43 H 0.257 0.743 44 H 0.122 0.878 45 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -1.780 -0.086 9.462 9.628 hybrid contribution -0.869 -0.396 0.160 0.968 sum -2.649 -0.483 9.622 9.992 Atomic orbital electron populations 1.21744 0.93773 1.02108 1.03227 1.22490 0.95612 0.83556 1.00245 1.88070 1.22069 1.27424 1.93755 1.23955 0.80117 1.01998 0.83650 1.86145 1.75826 1.43840 1.19895 1.18945 0.98988 0.88135 0.88634 1.20703 1.06340 1.01454 0.90657 1.22797 0.93331 0.90877 1.00940 1.20829 0.95984 0.98350 0.93827 1.21630 0.90567 0.89634 0.96362 1.44283 1.02819 1.56295 1.27184 1.19658 0.96471 1.18084 0.99510 0.90365 1.24690 0.95618 1.00685 1.00259 1.69005 0.99962 1.45453 1.41660 0.85892 0.77372 0.80331 0.81344 1.20683 1.21707 1.21543 1.20599 0.91714 0.88959 0.95753 1.22386 0.92710 0.99619 1.02770 1.24179 0.85610 0.78523 0.79525 1.90685 1.53357 1.64744 1.32320 1.84629 1.50751 1.31828 1.66411 1.20943 0.99270 0.97947 0.93631 1.20946 1.06859 0.95087 1.00064 0.92073 0.91546 0.91222 0.92623 0.93559 0.88825 0.88528 0.87217 0.80250 0.80727 0.97740 0.93374 0.92779 0.93121 0.88383 0.87813 0.74256 0.87816 0.86973 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.68 10.28 37.16 0.38 -1.30 16 2 C 0.06 0.71 6.54 37.16 0.24 0.95 16 3 O -0.39 -5.86 9.83 -59.04 -0.58 -6.44 16 4 C 0.22 2.92 6.39 101.05 0.65 3.57 16 5 O -0.34 -5.92 10.19 -43.24 -0.44 -6.36 16 6 C 0.10 1.91 6.63 -39.21 -0.26 1.65 16 7 C -0.17 -3.62 9.99 -39.43 -0.39 -4.01 16 8 C -0.06 -1.39 9.20 -39.61 -0.36 -1.75 16 9 C -0.09 -1.96 5.46 -104.60 -0.57 -2.53 16 10 C 0.14 3.23 5.29 -5.19 -0.03 3.20 16 11 N -0.59 -13.53 2.52 -174.60 -0.44 -13.97 16 12 C -0.21 -5.17 9.82 -15.06 -0.15 -5.32 16 13 H 0.08 1.91 7.83 -52.49 -0.41 1.50 16 14 C -0.02 -0.54 5.45 -17.43 -0.09 -0.63 16 15 N -0.91 -22.28 5.73 55.49 0.32 -21.97 16 16 Si 0.92 20.39 29.56 -169.99 -5.02 15.36 16 17 H -0.28 -6.22 7.11 56.52 0.40 -5.82 16 18 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 19 H -0.29 -6.57 7.11 56.52 0.40 -6.17 16 20 C 0.16 3.20 4.98 -4.04 -0.02 3.18 16 21 C -0.13 -2.26 6.14 -27.88 -0.17 -2.43 16 22 C 0.48 7.61 8.33 36.01 0.30 7.91 16 23 O -0.52 -9.78 16.74 -18.75 -0.31 -10.09 16 24 O -0.52 -6.61 13.42 -39.23 -0.53 -7.13 16 25 C -0.10 -2.05 9.34 -39.61 -0.37 -2.42 16 26 C -0.21 -4.12 8.78 -39.43 -0.35 -4.46 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.07 0.85 8.14 -51.93 -0.42 0.42 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.06 0.75 8.03 -51.93 -0.42 0.34 16 31 H 0.05 0.46 8.11 -51.93 -0.42 0.04 16 32 H 0.09 0.95 8.01 -51.93 -0.42 0.53 16 33 H 0.10 1.20 6.70 -51.93 -0.35 0.86 16 34 H 0.11 2.13 8.06 -52.49 -0.42 1.71 16 35 H 0.18 4.28 4.54 -52.69 -0.24 4.05 16 36 H 0.18 4.35 4.55 -82.31 -0.37 3.98 16 37 H 0.00 0.09 8.08 -51.93 -0.42 -0.33 16 38 H 0.25 6.03 8.08 -40.82 -0.33 5.71 16 39 H 0.05 1.15 7.99 -51.93 -0.42 0.73 16 40 H 0.05 1.04 7.00 -51.93 -0.36 0.68 16 41 H 0.10 1.58 8.14 -51.93 -0.42 1.16 16 42 H 0.10 1.74 8.14 -51.93 -0.42 1.31 16 43 H 0.40 3.18 9.10 45.56 0.41 3.59 16 44 H 0.10 2.02 7.43 -52.48 -0.39 1.63 16 45 H 0.11 1.98 5.86 -52.49 -0.31 1.67 16 LS Contribution 372.00 15.07 5.61 5.61 Total: -1.00 -29.11 372.00 -8.37 -37.47 By element: Atomic # 1 Polarization: 17.69 SS G_CDS: -5.77 Total: 11.92 kcal Atomic # 6 Polarization: -3.20 SS G_CDS: -1.20 Total: -4.40 kcal Atomic # 7 Polarization: -35.81 SS G_CDS: -0.12 Total: -35.94 kcal Atomic # 8 Polarization: -28.17 SS G_CDS: -1.86 Total: -30.03 kcal Atomic # 14 Polarization: 20.39 SS G_CDS: -5.02 Total: 15.36 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -29.11 -8.37 -37.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605641239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.551 kcal (2) G-P(sol) polarization free energy of solvation -29.107 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.026 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds