Wall clock time and date at job start Tue Mar 31 2020 13:38:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 O 1.42902 * 109.47678 * 2 1 4 4 C 1.42892 * 114.00327 * 179.97438 * 3 2 1 5 5 O 1.42903 * 109.47330 * 74.99884 * 4 3 2 6 6 C 1.35899 * 116.99852 * 74.99641 * 5 4 3 7 7 C 1.38735 * 120.05577 * 180.02562 * 6 5 4 8 8 C 1.38144 * 119.94082 * 180.02562 * 7 6 5 9 9 C 1.38263 * 120.06124 * 0.02679 * 8 7 6 10 10 C 1.50697 * 119.94801 * 179.97438 * 9 8 7 11 11 N 1.46505 * 109.46605 * 95.28528 * 10 9 8 12 12 C 1.36937 * 120.00185 * 265.71817 * 11 10 9 13 13 H 1.07997 * 120.00073 * 185.46867 * 12 11 10 14 14 C 1.38808 * 119.99737 * 5.46762 * 12 11 10 15 15 N 1.31612 * 120.00342 * 354.99552 * 14 12 11 16 16 Si 1.86799 * 119.99653 * 174.99523 * 14 12 11 17 17 H 1.48501 * 109.47652 * 0.02562 * 16 14 12 18 18 H 1.48508 * 109.46973 * 120.00287 * 16 14 12 19 19 H 1.48499 * 109.47531 * 239.99849 * 16 14 12 20 20 C 1.46503 * 119.99899 * 85.44596 * 11 10 9 21 21 C 1.53005 * 109.46913 * 89.99367 * 20 11 10 22 22 C 1.50705 * 109.46958 * 179.97438 * 21 20 11 23 23 O 1.20827 * 119.99965 * 0.02562 * 22 21 20 24 24 O 1.34220 * 119.99866 * 180.02562 * 22 21 20 25 25 C 1.38268 * 120.10732 * 0.25044 * 9 8 7 26 26 C 1.38141 * 120.05913 * 359.44817 * 25 9 8 27 27 H 1.08996 * 109.46808 * 300.00067 * 1 2 3 28 28 H 1.09002 * 109.46856 * 59.99912 * 1 2 3 29 29 H 1.08993 * 109.46952 * 179.97438 * 1 2 3 30 30 H 1.09004 * 109.47139 * 239.99845 * 2 1 3 31 31 H 1.09002 * 109.46856 * 120.00088 * 2 1 3 32 32 H 1.08999 * 109.47274 * 314.99970 * 4 3 2 33 33 H 1.09000 * 109.47488 * 195.00141 * 4 3 2 34 34 H 1.07997 * 120.02850 * 0.02562 * 7 6 5 35 35 H 1.08002 * 119.97005 * 179.97438 * 8 7 6 36 36 H 1.09004 * 109.47158 * 335.29350 * 10 9 8 37 37 H 1.08996 * 109.47764 * 215.28269 * 10 9 8 38 38 H 0.97003 * 120.00243 * 179.97438 * 15 14 12 39 39 H 1.09000 * 109.47367 * 209.99750 * 20 11 10 40 40 H 1.09005 * 109.46985 * 329.99989 * 20 11 10 41 41 H 1.08996 * 109.47670 * 299.99925 * 21 20 11 42 42 H 1.09005 * 109.46787 * 60.00501 * 21 20 11 43 43 H 0.96707 * 116.99823 * 180.02562 * 24 22 21 44 44 H 1.08009 * 119.97171 * 179.70566 * 25 9 8 45 45 H 1.07998 * 120.03482 * 180.25417 * 26 25 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0065 1.3472 0.0000 4 6 3.4309 1.4600 0.0006 5 8 3.9339 1.1498 -1.3005 6 6 3.7696 2.0917 -2.2662 7 6 4.2334 1.8565 -3.5524 8 6 4.0656 2.8159 -4.5321 9 6 3.4365 4.0099 -4.2317 10 6 3.2553 5.0549 -5.3023 11 7 1.9256 4.9149 -5.9011 12 6 1.7619 4.1704 -7.0388 13 1 0.8005 4.1390 -7.5298 14 6 2.8316 3.4564 -7.5608 15 7 4.0263 3.5720 -7.0208 16 14 2.5756 2.3313 -9.0298 17 1 1.1512 2.3784 -9.4472 18 1 3.4355 2.7814 -10.1538 19 1 2.9368 0.9400 -8.6568 20 6 0.7699 5.5664 -5.2795 21 6 0.6030 6.9718 -5.8609 22 6 -0.5861 7.6417 -5.2218 23 8 -1.2333 7.0555 -4.3868 24 8 -0.9262 8.8896 -5.5804 25 6 2.9785 4.2490 -2.9492 26 6 3.1382 3.2905 -1.9674 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0276 -0.0005 30 1 1.8934 -0.5139 -0.8900 31 1 1.8933 -0.5139 0.8900 32 1 3.8502 0.7644 0.7275 33 1 3.7148 2.4783 0.2665 34 1 4.7252 0.9242 -3.7875 35 1 4.4268 2.6334 -5.5335 36 1 4.0160 4.9225 -6.0717 37 1 3.3527 6.0471 -4.8618 38 1 4.7738 3.0727 -7.3853 39 1 -0.1279 4.9815 -5.4792 40 1 0.9270 5.6348 -4.2030 41 1 1.5008 7.5567 -5.6611 42 1 0.4459 6.9033 -6.9374 43 1 -1.6962 9.2777 -5.1426 44 1 2.4916 5.1845 -2.7158 45 1 2.7767 3.4760 -0.9668 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001605641239.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:38:47 Heat of formation + Delta-G solvation = -132.972837 kcal Electronic energy + Delta-G solvation = -27788.093450 eV Core-core repulsion = 23771.806971 eV Total energy + Delta-G solvation = -4016.286480 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.20225 -41.07287 -39.35874 -38.06946 -37.17399 -36.80018 -34.12799 -32.42238 -31.97653 -31.43084 -30.71381 -27.52102 -26.69079 -26.09880 -23.86103 -23.38045 -23.21948 -21.91878 -21.16570 -19.35631 -19.08179 -18.72050 -17.95617 -17.65278 -17.48797 -17.01810 -16.67884 -16.21694 -16.13550 -15.87045 -15.34586 -15.19101 -14.73148 -14.63820 -14.48462 -14.20342 -14.14778 -13.87838 -13.37566 -13.30559 -13.06715 -12.92418 -12.78167 -12.64885 -12.50370 -12.42791 -12.20796 -12.10859 -11.95845 -11.90721 -11.70957 -11.61745 -11.56575 -11.21596 -10.93905 -10.62223 -9.60990 -8.87281 -8.69302 -7.42339 -5.19567 0.71018 0.82217 1.26396 1.53928 1.58135 1.63951 2.19420 2.37642 2.58147 2.67914 3.14033 3.34720 3.92745 3.99342 4.07199 4.11749 4.13273 4.14484 4.21249 4.28471 4.34378 4.44722 4.60988 4.61753 4.76243 4.77437 4.79946 4.85162 4.97477 4.98669 5.03308 5.19424 5.22366 5.32372 5.45661 5.56825 5.64792 5.66193 5.82720 5.94666 6.01936 6.26897 6.37880 6.62968 6.76585 7.06616 7.36683 7.93973 8.27475 9.23112 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.008488 B = 0.004366 C = 0.003349 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3298.010927 B = 6411.953956 C = 8359.432210 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.050 3.950 3 O -0.413 6.413 4 C 0.206 3.794 5 O -0.347 6.347 6 C 0.102 3.898 7 C -0.185 4.185 8 C -0.080 4.080 9 C -0.107 4.107 10 C 0.147 3.853 11 N -0.598 5.598 12 C -0.226 4.226 13 H 0.075 0.925 14 C -0.056 4.056 15 N -0.911 5.911 16 Si 0.969 3.031 17 H -0.279 1.279 18 H -0.290 1.290 19 H -0.298 1.298 20 C 0.161 3.839 21 C -0.125 4.125 22 C 0.493 3.507 23 O -0.554 6.554 24 O -0.512 6.512 25 C -0.102 4.102 26 C -0.208 4.208 27 H 0.068 0.932 28 H 0.041 0.959 29 H 0.092 0.908 30 H 0.039 0.961 31 H 0.077 0.923 32 H 0.134 0.866 33 H 0.108 0.892 34 H 0.118 0.882 35 H 0.166 0.834 36 H 0.158 0.842 37 H 0.014 0.986 38 H 0.250 0.750 39 H 0.038 0.962 40 H 0.045 0.955 41 H 0.109 0.891 42 H 0.106 0.894 43 H 0.424 0.576 44 H 0.115 0.885 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.571 0.579 11.096 11.405 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.025 4.025 3 O -0.334 6.334 4 C 0.094 3.906 5 O -0.263 6.263 6 C 0.058 3.942 7 C -0.204 4.204 8 C -0.098 4.098 9 C -0.110 4.110 10 C 0.023 3.977 11 N -0.317 5.317 12 C -0.355 4.355 13 H 0.093 0.907 14 C -0.246 4.246 15 N -0.565 5.565 16 Si 0.799 3.201 17 H -0.205 1.205 18 H -0.217 1.217 19 H -0.226 1.226 20 C 0.034 3.966 21 C -0.165 4.165 22 C 0.337 3.663 23 O -0.445 6.445 24 O -0.326 6.326 25 C -0.121 4.121 26 C -0.226 4.226 27 H 0.087 0.913 28 H 0.060 0.940 29 H 0.111 0.889 30 H 0.057 0.943 31 H 0.095 0.905 32 H 0.151 0.849 33 H 0.126 0.874 34 H 0.137 0.863 35 H 0.182 0.818 36 H 0.173 0.827 37 H 0.032 0.968 38 H 0.063 0.937 39 H 0.056 0.944 40 H 0.064 0.936 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.286 0.714 44 H 0.133 0.867 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -2.366 0.155 11.006 11.258 hybrid contribution -0.722 -0.463 -0.201 0.881 sum -3.088 -0.308 10.805 11.241 Atomic orbital electron populations 1.21767 0.93115 1.03400 1.02391 1.22686 0.96267 0.82679 1.00906 1.88048 1.22731 1.28957 1.93664 1.24469 0.79847 1.04071 0.82262 1.86154 1.75948 1.43237 1.21002 1.18954 0.97806 0.88519 0.88878 1.20796 1.06841 1.01512 0.91273 1.22654 0.94480 0.91805 1.00868 1.20847 0.97143 0.98392 0.94569 1.21408 0.90048 0.90278 0.96002 1.44353 1.03494 1.56842 1.27002 1.19796 0.96434 1.18943 1.00348 0.90669 1.25229 0.95750 1.01622 1.01999 1.69229 1.00013 1.45315 1.41903 0.85142 0.77135 0.78422 0.79368 1.20457 1.21676 1.22556 1.20529 0.90131 0.90447 0.95464 1.22045 0.93987 0.97832 1.02623 1.23710 0.84800 0.79181 0.78643 1.90688 1.54303 1.65780 1.33746 1.84543 1.51936 1.29946 1.66133 1.21067 0.99065 0.98755 0.93247 1.21155 1.06183 0.94575 1.00735 0.91251 0.93953 0.88944 0.94291 0.90468 0.84876 0.87428 0.86350 0.81776 0.82663 0.96776 0.93710 0.94399 0.93634 0.87320 0.87541 0.71418 0.86742 0.84837 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.08 10.28 71.98 0.74 -2.34 16 2 C 0.05 1.15 6.54 71.98 0.47 1.62 16 3 O -0.41 -11.43 9.83 -126.21 -1.24 -12.67 16 4 C 0.21 5.00 6.39 113.37 0.72 5.72 16 5 O -0.35 -11.45 10.19 -69.65 -0.71 -12.16 16 6 C 0.10 3.97 6.63 22.51 0.15 4.12 16 7 C -0.19 -7.83 9.99 22.37 0.22 -7.60 16 8 C -0.08 -3.70 9.20 22.25 0.20 -3.49 16 9 C -0.11 -4.86 5.46 -19.85 -0.11 -4.97 16 10 C 0.15 6.79 5.29 85.63 0.45 7.24 16 11 N -0.60 -27.92 2.52 -706.31 -1.78 -29.69 16 12 C -0.23 -11.39 9.82 84.03 0.82 -10.57 16 13 H 0.08 3.73 7.83 -2.91 -0.02 3.71 16 14 C -0.06 -2.80 5.45 84.86 0.46 -2.34 16 15 N -0.91 -45.91 5.73 21.65 0.12 -45.78 16 16 Si 0.97 42.48 29.56 68.60 2.03 44.51 16 17 H -0.28 -12.03 7.11 99.48 0.71 -11.33 16 18 H -0.29 -12.61 7.11 99.48 0.71 -11.90 16 19 H -0.30 -13.45 7.11 99.48 0.71 -12.74 16 20 C 0.16 6.58 4.98 86.38 0.43 7.01 16 21 C -0.12 -4.09 6.14 29.85 0.18 -3.91 16 22 C 0.49 14.87 8.33 71.24 0.59 15.47 16 23 O -0.55 -20.17 16.74 21.96 0.37 -19.80 16 24 O -0.51 -11.50 13.42 -51.32 -0.69 -12.19 16 25 C -0.10 -4.21 9.34 22.25 0.21 -4.00 16 26 C -0.21 -7.87 8.78 22.37 0.20 -7.68 16 27 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.04 1.06 8.14 -2.39 -0.02 1.04 16 29 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 30 H 0.04 1.00 8.03 -2.39 -0.02 0.99 16 31 H 0.08 1.27 8.11 -2.39 -0.02 1.25 16 32 H 0.13 2.18 8.01 -2.39 -0.02 2.16 16 33 H 0.11 2.36 6.70 -2.39 -0.02 2.35 16 34 H 0.12 4.64 8.06 -2.91 -0.02 4.61 16 35 H 0.17 8.14 4.54 -3.32 -0.02 8.12 16 36 H 0.16 7.96 4.55 -62.37 -0.28 7.67 16 37 H 0.01 0.60 8.08 -2.39 -0.02 0.59 16 38 H 0.25 12.27 8.08 -92.71 -0.75 11.52 16 39 H 0.04 1.64 7.99 -2.39 -0.02 1.62 16 40 H 0.05 1.88 7.00 -2.38 -0.02 1.86 16 41 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 42 H 0.11 3.47 8.14 -2.38 -0.02 3.45 16 43 H 0.42 5.42 9.10 -74.05 -0.67 4.75 16 44 H 0.11 4.37 7.43 -2.91 -0.02 4.35 16 45 H 0.13 4.43 5.86 -2.91 -0.02 4.41 16 Total: -1.00 -62.94 372.00 3.95 -58.99 By element: Atomic # 1 Polarization: 34.42 SS G_CDS: 0.09 Total: 34.51 kcal Atomic # 6 Polarization: -11.47 SS G_CDS: 5.75 Total: -5.71 kcal Atomic # 7 Polarization: -73.82 SS G_CDS: -1.65 Total: -75.48 kcal Atomic # 8 Polarization: -54.55 SS G_CDS: -2.27 Total: -56.82 kcal Atomic # 14 Polarization: 42.48 SS G_CDS: 2.03 Total: 44.51 kcal Total: -62.94 3.95 -58.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001605641239.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.981 kcal (2) G-P(sol) polarization free energy of solvation -62.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -136.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.946 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds