Wall clock time and date at job start Tue Mar 31 2020 13:50:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46899 * 1 3 3 C 1.46907 * 110.99823 * 2 1 4 4 C 1.50705 * 109.46801 * 66.05050 * 3 2 1 5 5 H 1.08000 * 120.00039 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99700 * 179.97438 * 4 3 2 7 7 N 1.31512 * 120.00014 * 359.97438 * 6 4 3 8 8 Si 1.86799 * 119.99637 * 179.97438 * 6 4 3 9 9 H 1.48503 * 109.46790 * 90.00184 * 8 6 4 10 10 H 1.48497 * 109.46948 * 209.99634 * 8 6 4 11 11 H 1.48496 * 109.47396 * 330.00182 * 8 6 4 12 12 C 1.46904 * 110.99898 * 236.05098 * 2 1 3 13 13 C 1.53000 * 109.46815 * 199.84806 * 12 2 1 14 14 H 1.09001 * 109.47194 * 300.45411 * 13 12 2 15 15 O 1.42899 * 109.47216 * 60.46185 * 13 12 2 16 16 C 1.53002 * 109.46726 * 180.45976 * 13 12 2 17 17 O 1.42900 * 109.46918 * 175.00484 * 16 13 12 18 18 C 1.35899 * 116.99884 * 180.02562 * 17 16 13 19 19 C 1.38755 * 120.05732 * 359.71903 * 18 17 16 20 20 C 1.38125 * 119.94685 * 179.70420 * 19 18 17 21 21 C 1.38291 * 120.04906 * 0.59267 * 20 19 18 22 22 C 1.38237 * 120.11556 * 359.68226 * 21 20 19 23 23 C 1.38165 * 120.05383 * 0.02562 * 22 21 20 24 24 C 1.50707 * 120.02734 * 179.97438 * 23 22 21 25 25 C 1.50695 * 109.47089 * 265.02249 * 24 23 22 26 26 O 1.20825 * 120.00091 * 359.97438 * 25 24 23 27 27 O 1.34229 * 120.00284 * 179.97438 * 25 24 23 28 28 H 1.08999 * 109.47104 * 188.77408 * 1 2 3 29 29 H 1.09004 * 109.47084 * 308.77040 * 1 2 3 30 30 H 1.09003 * 109.47573 * 68.76964 * 1 2 3 31 31 H 1.09002 * 109.46729 * 186.04432 * 3 2 1 32 32 H 1.08997 * 109.47420 * 306.04937 * 3 2 1 33 33 H 0.96996 * 119.99686 * 180.02562 * 7 6 4 34 34 H 1.09000 * 109.46764 * 79.84935 * 12 2 1 35 35 H 1.09001 * 109.46788 * 319.85129 * 12 2 1 36 36 H 0.96698 * 114.00245 * 59.99305 * 15 13 12 37 37 H 1.09001 * 109.46911 * 294.99874 * 16 13 12 38 38 H 1.08996 * 109.47332 * 54.99963 * 16 13 12 39 39 H 1.08005 * 120.02748 * 359.97438 * 19 18 17 40 40 H 1.07998 * 119.97255 * 180.30000 * 20 19 18 41 41 H 1.08000 * 119.93967 * 179.69879 * 21 20 19 42 42 H 1.08001 * 119.97146 * 179.97438 * 22 21 20 43 43 H 1.09002 * 109.46868 * 25.02140 * 24 23 22 44 44 H 1.08995 * 109.47160 * 145.01891 * 24 23 22 45 45 H 0.96698 * 117.00703 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2986 5 1 1.0740 1.5114 2.0486 6 6 2.0276 3.3491 1.5290 7 7 2.7136 4.0013 0.6159 8 14 1.5827 4.1868 3.1383 9 1 2.6588 3.9497 4.1338 10 1 1.4313 5.6465 2.9112 11 1 0.3043 3.6301 3.6492 12 6 1.9954 -0.7659 -1.1377 13 6 3.4449 -1.1665 -0.8557 14 1 4.0464 -0.2704 -0.7029 15 8 3.4946 -1.9797 0.3183 16 6 3.9968 -1.9544 -2.0455 17 8 5.3832 -2.2281 -1.8336 18 6 6.0299 -2.9252 -2.8046 19 6 5.3427 -3.3424 -3.9355 20 6 6.0037 -4.0454 -4.9238 21 6 7.3464 -4.3442 -4.7811 22 6 8.0319 -3.9347 -3.6527 23 6 7.3767 -3.2259 -2.6641 24 6 8.1245 -2.7803 -1.4339 25 6 7.9323 -3.7931 -0.3348 26 8 7.2570 -4.7758 -0.5301 27 8 8.5114 -3.6037 0.8613 28 1 -0.3633 -1.0156 0.1568 29 1 -0.3633 0.6435 0.8013 30 1 -0.3634 0.3721 -0.9579 31 1 3.0797 1.3444 -0.1082 32 1 1.5611 1.9275 -0.8308 33 1 2.9887 4.9171 0.7783 34 1 1.9565 -0.1524 -2.0378 35 1 1.3922 -1.6622 -1.2825 36 1 2.9803 -2.7960 0.2534 37 1 3.4520 -2.8933 -2.1437 38 1 3.8773 -1.3680 -2.9565 39 1 4.2928 -3.1137 -4.0450 40 1 5.4703 -4.3661 -5.8064 41 1 7.8602 -4.8982 -5.5527 42 1 9.0804 -4.1696 -3.5434 43 1 9.1860 -2.6928 -1.6658 44 1 7.7431 -1.8129 -1.1074 45 1 8.3590 -4.2804 1.5350 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606105871.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:40 Heat of formation + Delta-G solvation = -149.139955 kcal Electronic energy + Delta-G solvation = -27376.161932 eV Core-core repulsion = 23359.174393 eV Total energy + Delta-G solvation = -4016.987538 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.75115 -39.82953 -38.24999 -37.05539 -36.12005 -35.37130 -33.22837 -32.50384 -30.74336 -29.92747 -28.11182 -27.36018 -26.43557 -23.91599 -23.02482 -22.47967 -21.55414 -20.82536 -20.13359 -18.16161 -18.10286 -16.84086 -16.66570 -16.47660 -16.22806 -15.95876 -15.65037 -15.30067 -14.83964 -14.77662 -14.45560 -14.32452 -13.63874 -13.50529 -13.37596 -13.11424 -13.08159 -12.58282 -12.52030 -12.33216 -11.97857 -11.64458 -11.52770 -11.47212 -11.25390 -11.19764 -11.03721 -10.91542 -10.67478 -10.63255 -10.62694 -10.37629 -9.79738 -9.71933 -9.17857 -9.08796 -8.42546 -8.27657 -7.26754 -6.02332 -4.02899 1.07114 1.30419 2.21799 3.01092 3.04218 3.33851 3.39539 3.42979 3.69381 4.38817 4.42530 4.54333 4.63754 4.70964 4.84489 4.96015 5.00338 5.07265 5.20494 5.28970 5.31854 5.33014 5.34062 5.41443 5.45330 5.54397 5.59908 5.82864 5.91773 6.08128 6.14928 6.20293 6.26634 6.32734 6.35039 6.46688 6.61711 6.69698 7.22179 7.27960 7.32328 7.78438 7.87412 8.03282 8.07184 8.17563 8.52527 9.04052 9.61016 11.08837 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014362 B = 0.002882 C = 0.002650 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1949.105359 B = 9714.063524 C =10564.685306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.530 5.530 3 C 0.191 3.809 4 C -0.505 4.505 5 H 0.064 0.936 6 C 0.055 3.945 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.029 3.971 13 C 0.118 3.882 14 H 0.113 0.887 15 O -0.532 6.532 16 C 0.029 3.971 17 O -0.298 6.298 18 C 0.154 3.846 19 C -0.211 4.211 20 C -0.075 4.075 21 C -0.163 4.163 22 C -0.067 4.067 23 C -0.115 4.115 24 C -0.064 4.064 25 C 0.484 3.516 26 O -0.510 6.510 27 O -0.518 6.518 28 H 0.045 0.955 29 H 0.079 0.921 30 H 0.009 0.991 31 H 0.031 0.969 32 H -0.010 1.010 33 H 0.261 0.739 34 H 0.036 0.964 35 H 0.063 0.937 36 H 0.363 0.637 37 H 0.063 0.937 38 H 0.070 0.930 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.112 0.888 44 H 0.121 0.879 45 H 0.409 0.591 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.508 -17.047 -10.490 22.160 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.254 5.254 3 C 0.066 3.934 4 C -0.544 4.544 5 H 0.082 0.918 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.726 3.274 9 H -0.206 1.206 10 H -0.214 1.214 11 H -0.199 1.199 12 C -0.100 4.100 13 C 0.058 3.942 14 H 0.131 0.869 15 O -0.335 6.335 16 C -0.047 4.047 17 O -0.211 6.211 18 C 0.108 3.892 19 C -0.230 4.230 20 C -0.093 4.093 21 C -0.182 4.182 22 C -0.085 4.085 23 C -0.116 4.116 24 C -0.102 4.102 25 C 0.326 3.674 26 O -0.397 6.397 27 O -0.330 6.330 28 H 0.063 0.937 29 H 0.097 0.903 30 H 0.027 0.973 31 H 0.049 0.951 32 H 0.007 0.993 33 H 0.071 0.929 34 H 0.054 0.946 35 H 0.082 0.918 36 H 0.208 0.792 37 H 0.081 0.919 38 H 0.089 0.911 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.130 0.870 44 H 0.139 0.861 45 H 0.268 0.732 Dipole moment (debyes) X Y Z Total from point charges 10.063 -16.484 -10.039 21.766 hybrid contribution -1.167 0.038 -0.027 1.168 sum 8.895 -16.446 -10.066 21.235 Atomic orbital electron populations 1.22233 0.88536 1.00087 1.00205 1.61987 1.06714 1.17902 1.38811 1.19799 0.95498 0.81363 0.96703 1.21139 1.34754 0.96818 1.01656 0.91822 1.24985 0.95307 0.97357 0.96991 1.69951 1.38418 1.11513 1.34054 0.86488 0.78886 0.78321 0.83657 1.20559 1.21366 1.19890 1.22556 0.94840 0.98530 0.94086 1.21934 0.95677 0.93706 0.82878 0.86922 1.86724 1.73549 1.35810 1.37389 1.23741 0.79742 1.00220 1.01008 1.86150 1.24188 1.68905 1.41856 1.18858 0.91360 0.91150 0.87863 1.21253 1.00806 1.05403 0.95522 1.20956 0.94497 0.95992 0.97818 1.20959 0.94824 1.03612 0.98772 1.20818 0.99638 0.95203 0.92833 1.18571 0.91458 1.04644 0.96936 1.20047 1.02571 0.98486 0.89071 1.23316 0.75562 0.86029 0.82478 1.90716 1.36880 1.30302 1.81807 1.84524 1.70421 1.54236 1.23799 0.93664 0.90272 0.97286 0.95090 0.99256 0.92937 0.94562 0.91849 0.79183 0.91853 0.91139 0.85335 0.85822 0.85880 0.85479 0.86970 0.86051 0.73201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.72 9.37 60.06 0.56 1.28 16 2 N -0.53 -11.29 4.56 -244.36 -1.11 -12.40 16 3 C 0.19 4.96 4.55 -4.97 -0.02 4.94 16 4 C -0.51 -14.30 8.39 -34.44 -0.29 -14.59 16 5 H 0.06 1.80 7.16 -52.49 -0.38 1.42 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.47 16 7 N -0.90 -26.78 13.29 55.43 0.74 -26.04 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 10 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 11 H -0.27 -6.52 7.11 56.52 0.40 -6.12 16 12 C 0.03 0.49 4.66 -3.82 -0.02 0.47 16 13 C 0.12 1.95 3.31 -26.73 -0.09 1.86 16 14 H 0.11 2.20 6.78 -51.93 -0.35 1.85 16 15 O -0.53 -9.38 13.18 -40.09 -0.53 -9.91 16 16 C 0.03 0.38 4.37 37.16 0.16 0.54 16 17 O -0.30 -4.42 9.24 -24.28 -0.22 -4.64 16 18 C 0.15 2.05 6.66 -39.22 -0.26 1.79 16 19 C -0.21 -2.42 9.04 -39.43 -0.36 -2.78 16 20 C -0.07 -0.73 10.04 -39.60 -0.40 -1.13 16 21 C -0.16 -1.53 10.04 -39.56 -0.40 -1.93 16 22 C -0.07 -0.67 9.68 -39.61 -0.38 -1.05 16 23 C -0.12 -1.38 4.39 -104.47 -0.46 -1.84 16 24 C -0.06 -0.69 5.66 -29.03 -0.16 -0.85 16 25 C 0.48 6.03 8.32 36.00 0.30 6.33 16 26 O -0.51 -7.95 16.79 -18.75 -0.31 -8.26 16 27 O -0.52 -5.32 13.42 -39.25 -0.53 -5.84 16 28 H 0.04 0.73 8.14 -51.93 -0.42 0.31 16 29 H 0.08 1.65 6.66 -51.93 -0.35 1.30 16 30 H 0.01 0.16 8.13 -51.93 -0.42 -0.26 16 31 H 0.03 0.86 6.63 -51.93 -0.34 0.51 16 32 H -0.01 -0.28 8.12 -51.93 -0.42 -0.71 16 33 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.04 0.60 8.00 -51.93 -0.42 0.19 16 35 H 0.06 0.88 7.94 -51.93 -0.41 0.47 16 36 H 0.36 4.93 9.05 45.56 0.41 5.34 16 37 H 0.06 0.72 7.65 -51.93 -0.40 0.32 16 38 H 0.07 0.83 7.67 -51.93 -0.40 0.43 16 39 H 0.13 1.28 6.30 -52.48 -0.33 0.95 16 40 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 41 H 0.12 0.84 8.06 -52.49 -0.42 0.42 16 42 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 43 H 0.11 0.83 8.05 -51.93 -0.42 0.41 16 44 H 0.12 1.37 7.69 -51.93 -0.40 0.97 16 45 H 0.41 2.59 9.10 45.56 0.41 3.00 16 LS Contribution 380.84 15.07 5.74 5.74 Total: -1.00 -35.88 380.84 -8.20 -44.08 By element: Atomic # 1 Polarization: 10.96 SS G_CDS: -5.03 Total: 5.93 kcal Atomic # 6 Polarization: -3.57 SS G_CDS: -1.91 Total: -5.48 kcal Atomic # 7 Polarization: -38.07 SS G_CDS: -0.38 Total: -38.45 kcal Atomic # 8 Polarization: -27.06 SS G_CDS: -1.59 Total: -28.65 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -35.88 -8.20 -44.08 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606105871.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.060 kcal (2) G-P(sol) polarization free energy of solvation -35.884 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.080 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds