Wall clock time and date at job start Tue Mar 31 2020 13:50:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 111.00063 * 2 1 4 4 C 1.50702 * 109.47190 * 293.95559 * 3 2 1 5 5 H 1.08001 * 119.99595 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00069 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99820 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99916 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47273 * 59.99393 * 8 6 4 10 10 H 1.48493 * 109.47045 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46973 * 299.99411 * 8 6 4 12 12 C 1.46901 * 110.99899 * 123.95375 * 2 1 3 13 13 C 1.53002 * 109.46853 * 164.00823 * 12 2 1 14 14 H 1.09000 * 109.47212 * 58.51444 * 13 12 2 15 15 O 1.42897 * 109.47298 * 298.50701 * 13 12 2 16 16 C 1.53001 * 109.47080 * 178.50691 * 13 12 2 17 17 O 1.42903 * 109.47409 * 185.00260 * 16 13 12 18 18 C 1.35897 * 117.00152 * 180.02562 * 17 16 13 19 19 C 1.38756 * 120.05626 * 359.97438 * 18 17 16 20 20 C 1.38116 * 119.94423 * 180.27785 * 19 18 17 21 21 C 1.38287 * 120.05740 * 359.49584 * 20 19 18 22 22 C 1.38246 * 120.11095 * 0.50550 * 21 20 19 23 23 C 1.38171 * 120.05291 * 359.74801 * 22 21 20 24 24 C 1.50701 * 120.02860 * 179.97438 * 23 22 21 25 25 C 1.50706 * 109.47052 * 265.02080 * 24 23 22 26 26 O 1.20819 * 119.99876 * 0.02562 * 25 24 23 27 27 O 1.34222 * 119.99880 * 179.97438 * 25 24 23 28 28 H 1.08998 * 109.47122 * 301.53094 * 1 2 3 29 29 H 1.09001 * 109.47354 * 61.53282 * 1 2 3 30 30 H 1.08998 * 109.47168 * 181.53021 * 1 2 3 31 31 H 1.08997 * 109.47218 * 53.95375 * 3 2 1 32 32 H 1.09007 * 109.46926 * 173.95441 * 3 2 1 33 33 H 0.96997 * 119.99281 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47374 * 44.01355 * 12 2 1 35 35 H 1.09000 * 109.47192 * 284.00821 * 12 2 1 36 36 H 0.96698 * 114.00342 * 300.00036 * 15 13 12 37 37 H 1.09008 * 109.46726 * 65.00216 * 16 13 12 38 38 H 1.08999 * 109.47107 * 305.00357 * 16 13 12 39 39 H 1.08004 * 120.02637 * 0.02562 * 19 18 17 40 40 H 1.08004 * 119.97424 * 179.72824 * 20 19 18 41 41 H 1.07996 * 119.95190 * 180.25590 * 21 20 19 42 42 H 1.08004 * 119.97672 * 179.72589 * 22 21 20 43 43 H 1.09000 * 109.47330 * 25.01831 * 24 23 22 44 44 H 1.08993 * 109.47509 * 145.02162 * 24 23 22 45 45 H 0.96704 * 117.00189 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0745 1.5112 -2.0487 6 6 2.0276 3.3492 -1.5289 7 7 2.7128 4.0015 -0.6154 8 14 1.5826 4.1870 -3.1381 9 1 0.1053 4.2244 -3.2847 10 1 2.1148 5.5732 -3.1381 11 1 2.1733 3.4294 -4.2705 12 6 1.9954 -0.7660 1.1376 13 6 3.4727 -1.0840 0.8983 14 1 4.0282 -0.1550 0.7697 15 8 3.6033 -1.8839 -0.2785 16 6 4.0307 -1.8495 2.0998 17 8 5.4361 -2.0447 1.9294 18 6 6.0900 -2.7136 2.9152 19 6 5.3935 -3.1722 4.0242 20 6 6.0615 -3.8467 5.0274 21 6 7.4215 -4.0742 4.9225 22 6 8.1178 -3.6183 3.8186 23 6 7.4551 -2.9385 2.8148 24 6 8.2148 -2.4412 1.6120 25 6 8.6139 -1.0042 1.8287 26 8 8.3127 -0.4419 2.8547 27 8 9.3047 -0.3496 0.8823 28 1 -0.3633 0.5374 0.8759 29 1 -0.3634 0.4898 -0.9034 30 1 -0.3633 -1.0273 0.0274 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3443 0.1082 33 1 2.9874 4.9176 -0.7774 34 1 1.4356 -1.6957 1.2399 35 1 1.8933 -0.1782 2.0498 36 1 3.1333 -2.7279 -0.2346 37 1 3.5358 -2.8178 2.1753 38 1 3.8511 -1.2777 3.0102 39 1 4.3306 -2.9983 4.1047 40 1 5.5206 -4.2000 5.8929 41 1 7.9413 -4.6054 5.7060 42 1 9.1807 -3.7934 3.7410 43 1 9.1084 -3.0490 1.4699 44 1 7.5821 -2.5131 0.7274 45 1 9.5385 0.5705 1.0667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001606105872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:43 Heat of formation + Delta-G solvation = -148.679228 kcal Electronic energy + Delta-G solvation = -27440.649936 eV Core-core repulsion = 23423.682376 eV Total energy + Delta-G solvation = -4016.967560 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.73457 -39.80215 -38.26002 -37.05945 -36.07661 -35.37359 -33.21820 -32.49364 -30.74069 -29.92168 -28.09860 -27.36306 -26.43557 -23.89474 -23.01205 -22.48678 -21.56523 -20.81250 -20.10913 -18.12770 -18.08331 -16.81893 -16.67192 -16.48214 -16.16122 -16.02995 -15.61425 -15.26299 -14.82120 -14.78077 -14.49562 -14.30110 -13.65786 -13.47644 -13.38831 -13.11700 -13.04397 -12.59175 -12.52224 -12.30835 -11.95403 -11.63253 -11.49803 -11.43749 -11.25346 -11.19364 -11.03951 -10.92585 -10.69150 -10.65137 -10.58730 -10.36124 -9.78033 -9.71813 -9.18133 -9.08312 -8.40902 -8.27235 -7.26981 -6.00669 -4.01586 1.07634 1.30790 2.25658 3.04023 3.04748 3.35591 3.39430 3.42847 3.70519 4.39573 4.43280 4.54844 4.63821 4.70433 4.84655 4.96123 5.00981 5.05762 5.21533 5.29330 5.31878 5.35171 5.35497 5.41941 5.46068 5.55035 5.60061 5.83607 5.92515 6.03767 6.15371 6.20801 6.28962 6.33161 6.36136 6.51881 6.62301 6.68502 7.23027 7.28589 7.32985 7.78737 7.91651 8.02741 8.07498 8.17819 8.53299 9.04895 9.62192 11.10430 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.003113 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.813234 B = 8992.200137 C =10405.158039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.040 3.960 2 N -0.530 5.530 3 C 0.191 3.809 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.275 1.275 12 C 0.029 3.971 13 C 0.117 3.883 14 H 0.114 0.886 15 O -0.532 6.532 16 C 0.029 3.971 17 O -0.298 6.298 18 C 0.154 3.846 19 C -0.211 4.211 20 C -0.074 4.074 21 C -0.164 4.164 22 C -0.067 4.067 23 C -0.115 4.115 24 C -0.064 4.064 25 C 0.481 3.519 26 O -0.508 6.508 27 O -0.518 6.518 28 H 0.011 0.989 29 H 0.075 0.925 30 H 0.043 0.957 31 H -0.010 1.010 32 H 0.032 0.968 33 H 0.262 0.738 34 H 0.064 0.936 35 H 0.034 0.966 36 H 0.362 0.638 37 H 0.064 0.936 38 H 0.070 0.930 39 H 0.129 0.871 40 H 0.124 0.876 41 H 0.123 0.877 42 H 0.127 0.873 43 H 0.112 0.888 44 H 0.122 0.878 45 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.383 -17.877 10.058 22.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 N -0.254 5.254 3 C 0.066 3.934 4 C -0.544 4.544 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.100 4.100 13 C 0.057 3.943 14 H 0.131 0.869 15 O -0.334 6.334 16 C -0.047 4.047 17 O -0.211 6.211 18 C 0.108 3.892 19 C -0.230 4.230 20 C -0.093 4.093 21 C -0.182 4.182 22 C -0.085 4.085 23 C -0.116 4.116 24 C -0.101 4.101 25 C 0.323 3.677 26 O -0.395 6.395 27 O -0.331 6.331 28 H 0.030 0.970 29 H 0.094 0.906 30 H 0.062 0.938 31 H 0.007 0.993 32 H 0.050 0.950 33 H 0.071 0.929 34 H 0.083 0.917 35 H 0.052 0.948 36 H 0.208 0.792 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.147 0.853 40 H 0.142 0.858 41 H 0.141 0.859 42 H 0.145 0.855 43 H 0.130 0.870 44 H 0.140 0.860 45 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges 9.858 -17.563 9.476 22.258 hybrid contribution -0.896 1.176 0.630 1.608 sum 8.961 -16.387 10.106 21.236 Atomic orbital electron populations 1.22199 0.88519 0.98972 1.01121 1.62015 1.06706 1.18000 1.38709 1.19805 0.95545 0.81295 0.96716 1.21091 1.34863 0.96840 1.01638 0.91891 1.24990 0.95286 0.97368 0.97000 1.69948 1.38333 1.11505 1.34121 0.86547 0.78611 0.78306 0.83869 1.20335 1.21379 1.20078 1.22558 0.94603 0.98662 0.94177 1.21953 0.95182 0.94557 0.82616 0.86866 1.86735 1.75324 1.33259 1.38124 1.23733 0.79099 1.00638 1.01195 1.86152 1.22511 1.70514 1.41911 1.18860 0.91430 0.91117 0.87819 1.21250 1.00669 1.05400 0.95684 1.20951 0.94505 0.96240 0.97560 1.20959 0.94536 1.03804 0.98880 1.20823 0.99380 0.95863 0.92418 1.18579 0.90745 1.04522 0.97773 1.20045 1.01866 0.89130 0.99062 1.23333 0.74056 0.89776 0.80514 1.90734 1.51473 1.68909 1.28403 1.84506 1.68678 1.31795 1.48086 0.97033 0.90608 0.93788 0.99269 0.95031 0.92881 0.91740 0.94754 0.79237 0.91782 0.91193 0.85338 0.85826 0.85881 0.85477 0.87007 0.86027 0.73028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.77 9.32 60.06 0.56 1.33 16 2 N -0.53 -11.33 4.60 -244.37 -1.12 -12.45 16 3 C 0.19 5.02 4.57 -4.98 -0.02 5.00 16 4 C -0.51 -14.44 8.54 -34.44 -0.29 -14.73 16 5 H 0.06 1.78 7.10 -52.49 -0.37 1.41 16 6 C 0.05 1.58 5.46 -17.82 -0.10 1.48 16 7 N -0.90 -27.14 13.29 55.43 0.74 -26.40 16 8 Si 0.90 22.01 29.54 -169.99 -5.02 16.99 16 9 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 10 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 11 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 12 C 0.03 0.50 4.63 -3.82 -0.02 0.48 16 13 C 0.12 1.94 3.27 -26.73 -0.09 1.85 16 14 H 0.11 2.31 6.55 -51.93 -0.34 1.97 16 15 O -0.53 -9.05 13.20 -40.08 -0.53 -9.58 16 16 C 0.03 0.39 4.37 37.16 0.16 0.55 16 17 O -0.30 -4.45 9.24 -24.26 -0.22 -4.68 16 18 C 0.15 2.06 6.66 -39.22 -0.26 1.80 16 19 C -0.21 -2.43 9.04 -39.43 -0.36 -2.79 16 20 C -0.07 -0.73 10.04 -39.61 -0.40 -1.13 16 21 C -0.16 -1.54 10.04 -39.56 -0.40 -1.94 16 22 C -0.07 -0.67 9.68 -39.60 -0.38 -1.05 16 23 C -0.12 -1.39 4.39 -104.47 -0.46 -1.85 16 24 C -0.06 -0.69 5.66 -29.03 -0.16 -0.85 16 25 C 0.48 6.35 8.32 36.01 0.30 6.65 16 26 O -0.51 -8.50 16.79 -18.74 -0.31 -8.82 16 27 O -0.52 -5.75 13.42 -39.24 -0.53 -6.28 16 28 H 0.01 0.21 8.13 -51.93 -0.42 -0.21 16 29 H 0.08 1.55 6.90 -51.93 -0.36 1.19 16 30 H 0.04 0.69 7.97 -51.93 -0.41 0.28 16 31 H -0.01 -0.29 8.11 -51.93 -0.42 -0.71 16 32 H 0.03 0.89 6.38 -51.93 -0.33 0.56 16 33 H 0.26 7.48 8.31 -40.82 -0.34 7.15 16 34 H 0.06 0.88 7.88 -51.93 -0.41 0.47 16 35 H 0.03 0.58 8.05 -51.93 -0.42 0.16 16 36 H 0.36 4.50 9.05 45.56 0.41 4.92 16 37 H 0.06 0.67 7.66 -51.92 -0.40 0.28 16 38 H 0.07 0.88 7.66 -51.93 -0.40 0.49 16 39 H 0.13 1.29 6.30 -52.48 -0.33 0.95 16 40 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 41 H 0.12 0.85 8.06 -52.49 -0.42 0.42 16 42 H 0.13 0.94 8.06 -52.48 -0.42 0.52 16 43 H 0.11 0.82 8.05 -51.93 -0.42 0.40 16 44 H 0.12 1.36 7.69 -51.93 -0.40 0.96 16 45 H 0.41 3.09 9.10 45.56 0.41 3.50 16 LS Contribution 380.46 15.07 5.73 5.73 Total: -1.00 -36.39 380.46 -8.19 -44.58 By element: Atomic # 1 Polarization: 11.11 SS G_CDS: -5.01 Total: 6.10 kcal Atomic # 6 Polarization: -3.28 SS G_CDS: -1.92 Total: -5.20 kcal Atomic # 7 Polarization: -38.46 SS G_CDS: -0.39 Total: -38.85 kcal Atomic # 8 Polarization: -27.76 SS G_CDS: -1.59 Total: -29.35 kcal Atomic # 14 Polarization: 22.01 SS G_CDS: -5.02 Total: 16.99 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -36.39 -8.19 -44.58 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606105872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -104.099 kcal (2) G-P(sol) polarization free energy of solvation -36.388 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -140.486 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.580 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.679 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds