Wall clock time and date at job start Tue Mar 31 2020 13:50:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46899 * 111.00063 * 2 1 4 4 C 1.50702 * 109.47190 * 293.95559 * 3 2 1 5 5 H 1.08001 * 119.99595 * 359.97438 * 4 3 2 6 6 C 1.37879 * 120.00069 * 180.02562 * 4 3 2 7 7 N 1.31516 * 119.99820 * 359.97438 * 6 4 3 8 8 Si 1.86802 * 119.99916 * 180.02562 * 6 4 3 9 9 H 1.48504 * 109.47273 * 59.99393 * 8 6 4 10 10 H 1.48493 * 109.47045 * 179.97438 * 8 6 4 11 11 H 1.48501 * 109.46973 * 299.99411 * 8 6 4 12 12 C 1.46901 * 110.99899 * 123.95375 * 2 1 3 13 13 C 1.53002 * 109.46853 * 164.00823 * 12 2 1 14 14 H 1.09000 * 109.47212 * 58.51444 * 13 12 2 15 15 O 1.42897 * 109.47298 * 298.50701 * 13 12 2 16 16 C 1.53001 * 109.47080 * 178.50691 * 13 12 2 17 17 O 1.42903 * 109.47409 * 185.00260 * 16 13 12 18 18 C 1.35897 * 117.00152 * 180.02562 * 17 16 13 19 19 C 1.38756 * 120.05626 * 359.97438 * 18 17 16 20 20 C 1.38116 * 119.94423 * 180.27785 * 19 18 17 21 21 C 1.38287 * 120.05740 * 359.49584 * 20 19 18 22 22 C 1.38246 * 120.11095 * 0.50550 * 21 20 19 23 23 C 1.38171 * 120.05291 * 359.74801 * 22 21 20 24 24 C 1.50701 * 120.02860 * 179.97438 * 23 22 21 25 25 C 1.50706 * 109.47052 * 265.02080 * 24 23 22 26 26 O 1.20819 * 119.99876 * 0.02562 * 25 24 23 27 27 O 1.34222 * 119.99880 * 179.97438 * 25 24 23 28 28 H 1.08998 * 109.47122 * 301.53094 * 1 2 3 29 29 H 1.09001 * 109.47354 * 61.53282 * 1 2 3 30 30 H 1.08998 * 109.47168 * 181.53021 * 1 2 3 31 31 H 1.08997 * 109.47218 * 53.95375 * 3 2 1 32 32 H 1.09007 * 109.46926 * 173.95441 * 3 2 1 33 33 H 0.96997 * 119.99281 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47374 * 44.01355 * 12 2 1 35 35 H 1.09000 * 109.47192 * 284.00821 * 12 2 1 36 36 H 0.96698 * 114.00342 * 300.00036 * 15 13 12 37 37 H 1.09008 * 109.46726 * 65.00216 * 16 13 12 38 38 H 1.08999 * 109.47107 * 305.00357 * 16 13 12 39 39 H 1.08004 * 120.02637 * 0.02562 * 19 18 17 40 40 H 1.08004 * 119.97424 * 179.72824 * 20 19 18 41 41 H 1.07996 * 119.95190 * 180.25590 * 21 20 19 42 42 H 1.08004 * 119.97672 * 179.72589 * 22 21 20 43 43 H 1.09000 * 109.47330 * 25.01831 * 24 23 22 44 44 H 1.08993 * 109.47509 * 145.02162 * 24 23 22 45 45 H 0.96704 * 117.00189 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6369 2.0471 -1.2984 5 1 1.0745 1.5112 -2.0487 6 6 2.0276 3.3492 -1.5289 7 7 2.7128 4.0015 -0.6154 8 14 1.5826 4.1870 -3.1381 9 1 0.1053 4.2244 -3.2847 10 1 2.1148 5.5732 -3.1381 11 1 2.1733 3.4294 -4.2705 12 6 1.9954 -0.7660 1.1376 13 6 3.4727 -1.0840 0.8983 14 1 4.0282 -0.1550 0.7697 15 8 3.6033 -1.8839 -0.2785 16 6 4.0307 -1.8495 2.0998 17 8 5.4361 -2.0447 1.9294 18 6 6.0900 -2.7136 2.9152 19 6 5.3935 -3.1722 4.0242 20 6 6.0615 -3.8467 5.0274 21 6 7.4215 -4.0742 4.9225 22 6 8.1178 -3.6183 3.8186 23 6 7.4551 -2.9385 2.8148 24 6 8.2148 -2.4412 1.6120 25 6 8.6139 -1.0042 1.8287 26 8 8.3127 -0.4419 2.8547 27 8 9.3047 -0.3496 0.8823 28 1 -0.3633 0.5374 0.8759 29 1 -0.3634 0.4898 -0.9034 30 1 -0.3633 -1.0273 0.0274 31 1 1.5611 1.9273 0.8309 32 1 3.0797 1.3443 0.1082 33 1 2.9874 4.9176 -0.7774 34 1 1.4356 -1.6957 1.2399 35 1 1.8933 -0.1782 2.0498 36 1 3.1333 -2.7279 -0.2346 37 1 3.5358 -2.8178 2.1753 38 1 3.8511 -1.2777 3.0102 39 1 4.3306 -2.9983 4.1047 40 1 5.5206 -4.2000 5.8929 41 1 7.9413 -4.6054 5.7060 42 1 9.1807 -3.7934 3.7410 43 1 9.1084 -3.0490 1.4699 44 1 7.5821 -2.5131 0.7274 45 1 9.5385 0.5705 1.0667 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001606105872.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:42 Heat of formation + Delta-G solvation = -177.187904 kcal Electronic energy + Delta-G solvation = -27441.886165 eV Core-core repulsion = 23423.682376 eV Total energy + Delta-G solvation = -4018.203789 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.66840 -40.81784 -39.48199 -38.23062 -37.09350 -36.88695 -34.63620 -34.05360 -31.92981 -30.85850 -29.44465 -28.93836 -27.70901 -25.65456 -24.10121 -23.60250 -22.62981 -21.94374 -21.55568 -19.12699 -19.06101 -18.61228 -17.88210 -17.60558 -17.38697 -17.10953 -16.69163 -16.45001 -16.39892 -15.97709 -15.82011 -15.55790 -15.10538 -14.95709 -14.32873 -14.30740 -14.03102 -13.95299 -13.86822 -13.30169 -13.28447 -13.12232 -12.95155 -12.65605 -12.56555 -12.54486 -12.39010 -12.31360 -12.26698 -11.96694 -11.88195 -11.67784 -11.52114 -11.35620 -10.94061 -10.61974 -9.86148 -9.12893 -9.01105 -8.22187 -6.32158 0.29354 0.49738 1.23227 1.38672 1.42923 1.50572 2.04929 2.20095 2.39235 2.90860 3.10165 3.24743 3.51461 3.59807 3.78881 3.84633 3.90524 4.05026 4.16399 4.23218 4.28787 4.32405 4.38648 4.49944 4.53594 4.53653 4.59862 4.60907 4.74753 4.79788 4.97074 5.07105 5.07799 5.15835 5.27989 5.37280 5.45422 5.57449 5.61553 5.62317 5.87004 6.03342 6.29788 6.40799 6.59800 6.83427 6.98017 6.98488 7.37336 8.88976 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013710 B = 0.003113 C = 0.002690 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.813234 B = 8992.200137 C =10405.158039 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.542 5.542 3 C 0.208 3.792 4 C -0.524 4.524 5 H 0.063 0.937 6 C -0.001 4.001 7 N -0.937 5.937 8 Si 0.970 3.030 9 H -0.264 1.264 10 H -0.283 1.283 11 H -0.269 1.269 12 C 0.031 3.969 13 C 0.125 3.875 14 H 0.060 0.940 15 O -0.553 6.553 16 C 0.040 3.960 17 O -0.325 6.325 18 C 0.121 3.879 19 C -0.223 4.223 20 C -0.079 4.079 21 C -0.163 4.163 22 C -0.072 4.072 23 C -0.134 4.134 24 C -0.062 4.062 25 C 0.481 3.519 26 O -0.551 6.551 27 O -0.516 6.516 28 H 0.010 0.990 29 H 0.055 0.945 30 H 0.087 0.913 31 H -0.040 1.040 32 H 0.000 1.000 33 H 0.264 0.736 34 H 0.110 0.890 35 H 0.032 0.968 36 H 0.384 0.616 37 H 0.100 0.900 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.151 0.849 41 H 0.152 0.848 42 H 0.154 0.846 43 H 0.149 0.851 44 H 0.114 0.886 45 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.125 -20.229 10.355 24.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.266 5.266 3 C 0.082 3.918 4 C -0.562 4.562 5 H 0.081 0.919 6 C -0.199 4.199 7 N -0.577 5.577 8 Si 0.794 3.206 9 H -0.189 1.189 10 H -0.208 1.208 11 H -0.194 1.194 12 C -0.098 4.098 13 C 0.065 3.935 14 H 0.078 0.922 15 O -0.359 6.359 16 C -0.036 4.036 17 O -0.239 6.239 18 C 0.076 3.924 19 C -0.241 4.241 20 C -0.097 4.097 21 C -0.181 4.181 22 C -0.089 4.089 23 C -0.135 4.135 24 C -0.099 4.099 25 C 0.325 3.675 26 O -0.442 6.442 27 O -0.329 6.329 28 H 0.028 0.972 29 H 0.074 0.926 30 H 0.106 0.894 31 H -0.022 1.022 32 H 0.018 0.982 33 H 0.073 0.927 34 H 0.128 0.872 35 H 0.051 0.949 36 H 0.232 0.768 37 H 0.117 0.883 38 H 0.089 0.911 39 H 0.157 0.843 40 H 0.168 0.832 41 H 0.170 0.830 42 H 0.171 0.829 43 H 0.167 0.833 44 H 0.132 0.868 45 H 0.285 0.715 Dipole moment (debyes) X Y Z Total from point charges 9.592 -19.949 9.765 24.193 hybrid contribution -0.751 1.832 0.586 2.065 sum 8.841 -18.117 10.351 22.661 Atomic orbital electron populations 1.22231 0.86888 1.01464 1.00054 1.61889 1.08261 1.15073 1.41355 1.19398 0.93574 0.83959 0.94892 1.21453 1.34850 0.97459 1.02441 0.91860 1.25958 0.94998 0.98143 1.00807 1.70091 1.39399 1.11889 1.36329 0.85424 0.78967 0.77102 0.79068 1.18887 1.20815 1.19439 1.22666 0.95088 0.99696 0.92314 1.21643 0.94632 0.93248 0.84026 0.92163 1.86676 1.76070 1.34603 1.38588 1.23554 0.79146 1.01800 0.99086 1.86088 1.23051 1.71540 1.43177 1.19214 0.92273 0.92465 0.88452 1.21488 1.01395 1.05633 0.95607 1.21340 0.95052 0.95458 0.97827 1.21396 0.94589 1.02930 0.99141 1.21209 1.00750 0.95030 0.91944 1.18891 0.90647 1.05159 0.98815 1.20160 1.03148 0.88081 0.98499 1.23876 0.73124 0.90602 0.79900 1.90709 1.53295 1.69990 1.30176 1.84487 1.68071 1.32941 1.47442 0.97188 0.92591 0.89414 1.02245 0.98191 0.92741 0.87156 0.94934 0.76785 0.88250 0.91051 0.84314 0.83170 0.82992 0.82885 0.83317 0.86819 0.71475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.54 9.32 127.69 1.19 2.73 16 2 N -0.54 -23.33 4.60 -927.05 -4.27 -27.59 16 3 C 0.21 11.47 4.57 85.56 0.39 11.86 16 4 C -0.52 -30.77 8.54 25.60 0.22 -30.55 16 5 H 0.06 3.63 7.10 -2.91 -0.02 3.61 16 6 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 7 N -0.94 -58.41 13.29 21.45 0.28 -58.13 16 8 Si 0.97 45.65 29.54 68.60 2.03 47.68 16 9 H -0.26 -11.78 7.11 99.48 0.71 -11.08 16 10 H -0.28 -12.96 7.11 99.48 0.71 -12.26 16 11 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 12 C 0.03 1.02 4.63 86.30 0.40 1.42 16 13 C 0.12 4.25 3.27 30.60 0.10 4.35 16 14 H 0.06 2.69 6.55 -2.39 -0.02 2.67 16 15 O -0.55 -18.88 13.20 -144.35 -1.90 -20.79 16 16 C 0.04 1.05 4.37 71.98 0.31 1.36 16 17 O -0.32 -9.96 9.24 -87.76 -0.81 -10.77 16 18 C 0.12 3.24 6.66 22.51 0.15 3.38 16 19 C -0.22 -4.85 9.04 22.36 0.20 -4.65 16 20 C -0.08 -1.37 10.04 22.25 0.22 -1.14 16 21 C -0.16 -2.61 10.04 22.28 0.22 -2.39 16 22 C -0.07 -1.30 9.68 22.26 0.22 -1.08 16 23 C -0.13 -3.16 4.39 -19.77 -0.09 -3.25 16 24 C -0.06 -1.32 5.66 29.10 0.16 -1.16 16 25 C 0.48 12.95 8.32 71.24 0.59 13.55 16 26 O -0.55 -19.14 16.79 21.99 0.37 -18.77 16 27 O -0.52 -11.56 13.42 -51.34 -0.69 -12.25 16 28 H 0.01 0.36 8.13 -2.39 -0.02 0.34 16 29 H 0.06 2.27 6.90 -2.39 -0.02 2.25 16 30 H 0.09 2.48 7.97 -2.39 -0.02 2.46 16 31 H -0.04 -2.38 8.11 -2.39 -0.02 -2.40 16 32 H 0.00 0.00 6.38 -2.38 -0.02 -0.01 16 33 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 34 H 0.11 2.65 7.88 -2.39 -0.02 2.63 16 35 H 0.03 1.10 8.05 -2.39 -0.02 1.08 16 36 H 0.38 8.94 9.05 -74.06 -0.67 8.27 16 37 H 0.10 1.87 7.66 -2.38 -0.02 1.85 16 38 H 0.07 1.82 7.66 -2.39 -0.02 1.80 16 39 H 0.14 2.56 6.30 -2.91 -0.02 2.54 16 40 H 0.15 1.71 8.06 -2.91 -0.02 1.68 16 41 H 0.15 1.51 8.06 -2.91 -0.02 1.48 16 42 H 0.15 1.83 8.06 -2.91 -0.02 1.81 16 43 H 0.15 1.92 8.05 -2.39 -0.02 1.90 16 44 H 0.11 2.61 7.69 -2.39 -0.02 2.59 16 45 H 0.42 6.58 9.10 -74.05 -0.67 5.91 16 Total: -1.00 -83.04 380.46 -0.55 -83.59 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.32 Total: 22.22 kcal Atomic # 6 Polarization: -9.94 SS G_CDS: 4.76 Total: -5.18 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -3.98 Total: -85.72 kcal Atomic # 8 Polarization: -59.55 SS G_CDS: -3.04 Total: -62.58 kcal Atomic # 14 Polarization: 45.65 SS G_CDS: 2.03 Total: 47.68 kcal Total: -83.04 -0.55 -83.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001606105872.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -93.602 kcal (2) G-P(sol) polarization free energy of solvation -83.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -176.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.586 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds