Wall clock time and date at job start Tue Mar 31 2020 14:01:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35898 * 116.99641 * 2 1 4 4 C 1.38795 * 120.02865 * 0.02562 * 3 2 1 5 5 C 1.38150 * 120.05594 * 180.02562 * 4 3 2 6 6 C 1.38198 * 120.11224 * 0.02562 * 5 4 3 7 7 C 1.50698 * 119.97565 * 180.02562 * 6 5 4 8 8 H 1.09000 * 109.47177 * 145.00295 * 7 6 5 9 9 N 1.46903 * 109.47002 * 24.99939 * 7 6 5 10 10 C 1.46903 * 110.99519 * 155.00200 * 9 7 6 11 11 C 1.53004 * 109.46934 * 179.97438 * 10 9 7 12 12 C 1.52988 * 109.47134 * 180.02562 * 11 10 9 13 13 C 1.50706 * 109.47396 * 180.02562 * 12 11 10 14 14 H 1.08007 * 119.99280 * 359.97438 * 13 12 11 15 15 C 1.37870 * 120.00357 * 179.97438 * 13 12 11 16 16 N 1.31514 * 120.00008 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00135 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.46976 * 0.02562 * 17 15 13 19 19 H 1.48495 * 109.47032 * 120.00107 * 17 15 13 20 20 H 1.48497 * 109.47189 * 240.00127 * 17 15 13 21 21 C 1.50697 * 109.46794 * 264.99942 * 7 6 5 22 22 O 1.20829 * 120.00172 * 119.99878 * 21 7 6 23 23 O 1.34236 * 120.00271 * 299.99802 * 21 7 6 24 24 C 1.38753 * 120.05092 * 359.97438 * 6 5 4 25 25 O 1.35891 * 120.02716 * 179.97438 * 24 6 5 26 26 C 1.42902 * 117.00279 * 180.02562 * 25 24 6 27 27 C 1.38613 * 120.02671 * 180.02562 * 3 2 1 28 28 H 1.08992 * 109.47713 * 60.00038 * 1 2 3 29 29 H 1.09003 * 109.46815 * 179.97438 * 1 2 3 30 30 H 1.08998 * 109.47334 * 299.99304 * 1 2 3 31 31 H 1.08002 * 119.97209 * 359.75001 * 4 3 2 32 32 H 1.08004 * 119.94625 * 179.97438 * 5 4 3 33 33 H 1.00895 * 110.99848 * 31.04471 * 9 7 6 34 34 H 1.08998 * 109.47181 * 299.99813 * 10 9 7 35 35 H 1.09005 * 109.46982 * 60.00118 * 10 9 7 36 36 H 1.09008 * 109.46838 * 300.00380 * 11 10 9 37 37 H 1.08998 * 109.46979 * 59.99952 * 11 10 9 38 38 H 1.09008 * 109.47416 * 299.99840 * 12 11 10 39 39 H 1.08998 * 109.47379 * 60.00010 * 12 11 10 40 40 H 0.97000 * 119.99821 * 179.97438 * 16 15 13 41 41 H 0.96695 * 117.00120 * 180.02562 * 23 21 7 42 42 H 1.08993 * 109.47648 * 180.02562 * 26 25 24 43 43 H 1.09002 * 109.47219 * 300.00507 * 26 25 24 44 44 H 1.09008 * 109.47039 * 60.00171 * 26 25 24 45 45 H 1.07994 * 120.05441 * 359.96223 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2109 0.0000 4 6 1.2905 2.3753 0.0005 5 6 1.9170 3.6065 0.0000 6 6 3.2969 3.6823 -0.0016 7 6 3.9771 5.0270 -0.0016 8 1 4.8931 4.9709 0.5867 9 7 3.0788 6.0302 0.5854 10 6 3.8399 7.1551 1.1451 11 6 2.8723 8.1771 1.7453 12 6 3.6650 9.3490 2.3276 13 6 2.7120 10.3554 2.9194 14 1 1.6474 10.1771 2.8833 15 6 3.1992 11.5036 3.5068 16 7 4.4955 11.7210 3.5503 17 14 2.0179 12.7514 4.2397 18 1 0.6225 12.2753 4.0628 19 1 2.3051 12.9140 5.6875 20 1 2.1870 14.0566 3.5519 21 6 4.3127 5.4201 -1.4172 22 8 3.8508 6.4322 -1.8888 23 8 5.1246 4.6460 -2.1543 24 6 4.0566 2.5212 -0.0021 25 8 5.4134 2.5962 -0.0042 26 6 6.1316 1.3608 -0.0053 27 6 3.4301 1.2842 -0.0005 28 1 -0.3634 0.5138 -0.8899 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8900 31 1 0.2120 2.3187 -0.0031 32 1 1.3274 4.5114 0.0000 33 1 2.4805 5.6152 1.2839 34 1 4.5106 6.7890 1.9224 35 1 4.4232 7.6280 0.3549 36 1 2.2019 8.5431 0.9676 37 1 2.2887 7.7045 2.5353 38 1 4.3357 8.9834 3.1053 39 1 4.2483 9.8215 1.5374 40 1 4.8382 12.5290 3.9633 41 1 5.3111 4.9394 -3.0566 42 1 7.2026 1.5630 -0.0065 43 1 5.8712 0.7885 0.8851 44 1 5.8685 0.7884 -0.8949 45 1 4.0196 0.3793 -0.0003 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607233698.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:21 Heat of formation + Delta-G solvation = -164.967720 kcal Electronic energy + Delta-G solvation = -27266.888249 eV Core-core repulsion = 23249.214367 eV Total energy + Delta-G solvation = -4017.673882 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.91025 -40.97802 -39.91050 -38.39940 -37.25927 -36.79678 -35.49648 -33.66881 -31.62100 -31.32108 -29.04323 -28.09399 -27.71616 -27.03159 -24.47973 -23.52472 -22.86360 -22.03479 -21.51751 -19.72644 -19.08087 -18.51690 -17.87930 -17.79917 -17.32672 -17.10031 -16.77449 -16.53794 -16.36748 -16.31440 -16.05217 -15.57477 -15.43662 -15.26841 -14.49457 -14.41550 -14.09094 -13.94301 -13.71221 -13.51173 -13.30147 -13.09365 -12.96610 -12.73102 -12.51534 -12.45926 -12.42351 -12.29884 -12.17908 -11.89920 -11.75300 -11.55964 -11.42028 -11.38390 -11.10530 -10.55099 -9.62526 -9.60101 -9.05119 -8.19176 -6.30132 0.20776 0.35378 1.28011 1.40487 1.41443 1.55043 2.02174 2.16784 2.41991 2.43796 2.64258 3.13424 3.13997 3.57464 3.78437 4.02483 4.14287 4.17067 4.21115 4.24814 4.31725 4.42586 4.44644 4.45775 4.47929 4.58557 4.66350 4.68799 4.79012 4.80638 4.93183 4.98737 5.05072 5.24308 5.27590 5.33109 5.51066 5.53483 5.65834 5.75073 5.83236 5.87172 6.24878 6.26622 6.32286 6.43086 6.86758 7.10317 7.38972 8.93286 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015149 B = 0.002609 C = 0.002402 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1847.806176 B =10728.878073 C =11654.454556 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.169 3.831 4 C -0.244 4.244 5 C -0.026 4.026 6 C -0.182 4.182 7 C 0.159 3.841 8 H 0.091 0.909 9 N -0.670 5.670 10 C 0.074 3.926 11 C -0.089 4.089 12 C 0.025 3.975 13 C -0.540 4.540 14 H 0.061 0.939 15 C -0.004 4.004 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.261 1.261 19 H -0.276 1.276 20 H -0.279 1.279 21 C 0.488 3.512 22 O -0.532 6.532 23 O -0.503 6.503 24 C 0.188 3.812 25 O -0.316 6.316 26 C 0.018 3.982 27 C -0.252 4.252 28 H 0.065 0.935 29 H 0.121 0.879 30 H 0.066 0.934 31 H 0.154 0.846 32 H 0.146 0.854 33 H 0.363 0.637 34 H 0.036 0.964 35 H 0.050 0.950 36 H 0.050 0.950 37 H 0.060 0.940 38 H -0.005 1.005 39 H -0.014 1.014 40 H 0.263 0.737 41 H 0.422 0.578 42 H 0.117 0.883 43 H 0.066 0.934 44 H 0.067 0.933 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.076 -29.935 -9.220 31.474 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.241 6.241 3 C 0.122 3.878 4 C -0.263 4.263 5 C -0.044 4.044 6 C -0.184 4.184 7 C 0.048 3.952 8 H 0.109 0.891 9 N -0.305 5.305 10 C -0.055 4.055 11 C -0.127 4.127 12 C -0.012 4.012 13 C -0.578 4.578 14 H 0.079 0.921 15 C -0.201 4.201 16 N -0.576 5.576 17 Si 0.792 3.208 18 H -0.185 1.185 19 H -0.202 1.202 20 H -0.205 1.205 21 C 0.329 3.671 22 O -0.420 6.420 23 O -0.316 6.316 24 C 0.141 3.859 25 O -0.228 6.228 26 C -0.076 4.076 27 C -0.271 4.271 28 H 0.084 0.916 29 H 0.139 0.861 30 H 0.085 0.915 31 H 0.171 0.829 32 H 0.164 0.836 33 H 0.186 0.814 34 H 0.054 0.946 35 H 0.069 0.931 36 H 0.068 0.932 37 H 0.079 0.921 38 H 0.013 0.987 39 H 0.004 0.996 40 H 0.072 0.928 41 H 0.282 0.718 42 H 0.135 0.865 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -3.069 -29.409 -9.496 31.056 hybrid contribution 0.190 0.775 0.453 0.918 sum -2.879 -28.634 -9.043 30.166 Atomic orbital electron populations 1.23401 0.76063 1.05767 1.02552 1.86043 1.23740 1.26425 1.87936 1.18880 0.91760 0.84762 0.92350 1.21339 1.01444 0.91145 1.12380 1.20857 0.92389 0.98656 0.92539 1.18671 0.93625 0.90541 1.15542 1.19369 0.96954 0.89307 0.89564 0.89139 1.59988 1.22116 1.09122 1.39289 1.21908 0.95506 0.91357 0.96710 1.21329 0.97571 0.94964 0.98797 1.18967 0.95001 0.93085 0.94194 1.21721 0.93889 1.05116 1.37086 0.92062 1.26024 0.96943 1.00485 0.96654 1.70115 1.13932 1.27622 1.45911 0.85358 0.79206 0.78260 0.77975 1.18464 1.20160 1.20507 1.23507 0.74440 0.80127 0.89029 1.90722 1.51339 1.27044 1.72905 1.84531 1.62121 1.53442 1.31465 1.18410 0.83156 0.92154 0.92189 1.86153 1.14496 1.34732 1.87457 1.23376 0.97411 0.84459 1.02400 1.20473 0.93060 0.97490 1.16093 0.91595 0.86079 0.91492 0.82860 0.83631 0.81421 0.94598 0.93145 0.93150 0.92094 0.98695 0.99590 0.92790 0.71771 0.86496 0.91549 0.91444 0.82886 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.36 10.50 -92.40 -0.97 -6.33 16 3 C 0.17 3.15 6.68 22.49 0.15 3.30 16 4 C -0.24 -4.39 9.04 22.38 0.20 -4.18 16 5 C -0.03 -0.56 8.85 22.24 0.20 -0.36 16 6 C -0.18 -4.35 4.87 -19.75 -0.10 -4.45 16 7 C 0.16 4.45 2.46 43.42 0.11 4.56 16 8 H 0.09 2.54 7.34 -2.39 -0.02 2.52 16 9 N -0.67 -20.70 5.10 -499.34 -2.54 -23.24 16 10 C 0.07 2.77 5.38 86.30 0.46 3.23 16 11 C -0.09 -3.87 5.41 30.59 0.17 -3.70 16 12 C 0.03 1.39 4.97 29.85 0.15 1.54 16 13 C -0.54 -31.89 9.11 25.60 0.23 -31.66 16 14 H 0.06 3.47 7.74 -2.91 -0.02 3.44 16 15 C 0.00 -0.22 5.46 84.65 0.46 0.24 16 16 N -0.94 -58.63 13.29 21.44 0.28 -58.34 16 17 Si 0.97 45.46 29.54 68.60 2.03 47.49 16 18 H -0.26 -11.65 7.11 99.48 0.71 -10.94 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 21 C 0.49 14.66 7.49 71.23 0.53 15.20 16 22 O -0.53 -20.10 16.68 21.96 0.37 -19.73 16 23 O -0.50 -11.41 13.03 -51.28 -0.67 -12.08 16 24 C 0.19 4.06 6.61 22.49 0.15 4.21 16 25 O -0.32 -6.41 9.36 -92.32 -0.86 -7.27 16 26 C 0.02 0.21 9.81 113.37 1.11 1.32 16 27 C -0.25 -4.75 8.97 22.46 0.20 -4.55 16 28 H 0.07 0.48 7.66 -2.39 -0.02 0.46 16 29 H 0.12 0.52 8.14 -2.39 -0.02 0.50 16 30 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 31 H 0.15 1.98 6.29 -2.91 -0.02 1.96 16 32 H 0.15 3.11 6.97 -2.91 -0.02 3.09 16 33 H 0.36 9.69 7.26 -89.70 -0.65 9.04 16 34 H 0.04 1.28 8.05 -2.39 -0.02 1.27 16 35 H 0.05 2.10 7.62 -2.38 -0.02 2.08 16 36 H 0.05 2.27 8.14 -2.38 -0.02 2.25 16 37 H 0.06 2.46 8.14 -2.39 -0.02 2.44 16 38 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 39 H -0.01 -0.87 8.14 -2.39 -0.02 -0.89 16 40 H 0.26 15.40 8.31 -92.71 -0.77 14.63 16 41 H 0.42 5.93 9.10 -74.06 -0.67 5.26 16 42 H 0.12 0.97 8.14 -2.39 -0.02 0.96 16 43 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 44 H 0.07 0.65 7.66 -2.38 -0.02 0.63 16 45 H 0.15 2.28 6.30 -2.91 -0.02 2.26 16 Total: -1.00 -78.23 378.21 2.47 -75.76 By element: Atomic # 1 Polarization: 18.09 SS G_CDS: -0.30 Total: 17.79 kcal Atomic # 6 Polarization: -19.19 SS G_CDS: 5.14 Total: -14.05 kcal Atomic # 7 Polarization: -79.32 SS G_CDS: -2.26 Total: -81.58 kcal Atomic # 8 Polarization: -43.27 SS G_CDS: -2.14 Total: -45.41 kcal Atomic # 14 Polarization: 45.46 SS G_CDS: 2.03 Total: 47.49 kcal Total: -78.23 2.47 -75.76 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607233698.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -89.206 kcal (2) G-P(sol) polarization free energy of solvation -78.235 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -167.441 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.473 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.761 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds