Wall clock time and date at job start Tue Mar 31 2020 14:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00072 * 2 1 4 4 C 1.38797 * 120.02645 * 0.02562 * 3 2 1 5 5 C 1.38153 * 120.05322 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.11049 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.97374 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47022 * 219.99909 * 7 6 5 9 9 N 1.46903 * 109.47016 * 339.99934 * 7 6 5 10 10 C 1.46905 * 110.99941 * 205.00409 * 9 7 6 11 11 C 1.52997 * 109.46757 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46800 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47199 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00027 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99842 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00183 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99445 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47072 * 90.00968 * 17 15 13 19 19 H 1.48508 * 109.46916 * 210.00173 * 17 15 13 20 20 H 1.48497 * 109.47552 * 330.00111 * 17 15 13 21 21 C 1.50704 * 109.47285 * 99.99658 * 7 6 5 22 22 O 1.20822 * 119.99963 * 240.00261 * 21 7 6 23 23 O 1.34228 * 119.99708 * 60.00198 * 21 7 6 24 24 C 1.38750 * 120.05532 * 0.02562 * 6 5 4 25 25 O 1.35900 * 120.02845 * 180.02562 * 24 6 5 26 26 C 1.42903 * 116.99934 * 179.97438 * 25 24 6 27 27 C 1.38615 * 120.02764 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46850 * 60.00726 * 1 2 3 29 29 H 1.09002 * 109.46749 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47251 * 300.00322 * 1 2 3 31 31 H 1.07992 * 119.96978 * 359.95936 * 4 3 2 32 32 H 1.07999 * 119.94483 * 179.97438 * 5 4 3 33 33 H 1.00906 * 110.99722 * 328.95082 * 9 7 6 34 34 H 1.09001 * 109.46402 * 299.99316 * 10 9 7 35 35 H 1.08995 * 109.47003 * 59.99746 * 10 9 7 36 36 H 1.09000 * 109.47440 * 299.99736 * 11 10 9 37 37 H 1.08995 * 109.47424 * 60.00184 * 11 10 9 38 38 H 1.09010 * 109.46986 * 299.99580 * 12 11 10 39 39 H 1.08997 * 109.47593 * 59.99660 * 12 11 10 40 40 H 0.96996 * 120.00052 * 179.97438 * 16 15 13 41 41 H 0.96700 * 116.99512 * 180.02562 * 23 21 7 42 42 H 1.08997 * 109.47042 * 59.99597 * 26 25 24 43 43 H 1.08997 * 109.47120 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.46951 * 299.99975 * 26 25 24 45 45 H 1.08004 * 120.05142 * 359.74932 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2906 2.3753 0.0005 5 6 1.9172 3.6065 0.0011 6 6 3.2972 3.6821 0.0016 7 6 3.9775 5.0268 0.0028 8 1 4.8442 4.9960 -0.6575 9 7 3.0374 6.0516 -0.4706 10 6 3.7540 7.1995 -1.0423 11 6 2.7438 8.2429 -1.5237 12 6 3.4902 9.4387 -2.1186 13 6 2.4952 10.4668 -2.5923 14 1 1.4364 10.2852 -2.4806 15 6 2.9367 11.6392 -3.1682 16 7 4.2259 11.8600 -3.3047 17 14 1.7033 12.9131 -3.7559 18 1 1.4047 13.8595 -2.6512 19 1 2.2728 13.6594 -4.9066 20 1 0.4521 12.2333 -4.1773 21 6 4.4239 5.3627 1.4024 22 8 4.0022 6.3541 1.9494 23 8 5.2900 4.5606 2.0413 24 6 4.0567 2.5210 0.0011 25 8 5.4137 2.5960 0.0021 26 6 6.1317 1.3604 0.0021 27 6 3.4302 1.2840 0.0005 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2121 2.3187 0.0003 32 1 1.3277 4.5114 0.0011 33 1 2.3854 5.6643 -1.1363 34 1 4.3983 7.6408 -0.2819 35 1 4.3608 6.8663 -1.8842 36 1 2.0997 7.8013 -2.2841 37 1 2.1367 8.5761 -0.6821 38 1 4.1340 9.8803 -1.3578 39 1 4.0977 9.1059 -2.9601 40 1 4.5364 12.6846 -3.7102 41 1 5.5466 4.8171 2.9376 42 1 5.8706 0.7886 -0.8883 43 1 7.2027 1.5627 0.0025 44 1 5.8693 0.7877 0.8916 45 1 4.0196 0.3791 0.0050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607233699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:25 Heat of formation + Delta-G solvation = -137.970148 kcal Electronic energy + Delta-G solvation = -27282.939137 eV Core-core repulsion = 23266.435958 eV Total energy + Delta-G solvation = -4016.503179 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.04639 -39.94706 -39.19038 -37.40298 -36.18473 -35.52329 -33.65897 -31.99638 -30.71042 -30.14254 -28.00600 -27.53409 -26.70264 -25.47620 -22.83207 -22.62519 -21.87407 -20.65693 -20.03423 -18.98910 -17.96920 -17.14183 -16.77761 -16.55672 -16.30580 -16.14531 -15.98497 -15.68087 -15.24682 -14.96181 -14.73914 -14.45561 -14.24520 -14.02842 -13.33934 -13.20084 -13.10489 -12.76100 -12.60840 -12.29072 -12.19214 -11.85873 -11.78853 -11.49968 -11.46929 -11.18094 -11.14637 -10.92247 -10.79479 -10.56302 -10.48104 -10.30036 -9.63843 -9.30079 -9.00991 -8.85894 -8.35441 -8.28506 -8.22099 -5.93913 -3.95642 1.03091 1.13599 2.44829 2.80156 3.03496 3.09565 3.36589 3.42245 3.45755 3.49200 4.25990 4.50599 4.51419 4.55311 4.74002 4.77717 4.80149 4.80768 4.91577 5.05107 5.10752 5.17948 5.25467 5.30322 5.41921 5.43999 5.47873 5.75571 5.83127 5.92371 6.04125 6.14199 6.29267 6.35906 6.65997 6.72996 6.79014 6.92962 7.13218 7.17998 7.23658 7.50899 7.75135 7.90809 8.06960 8.15941 8.50035 9.11513 9.67900 11.17683 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015251 B = 0.002615 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.507531 B =10706.523488 C =11720.989137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.318 6.318 3 C 0.170 3.830 4 C -0.246 4.246 5 C -0.021 4.021 6 C -0.165 4.165 7 C 0.156 3.844 8 H 0.091 0.909 9 N -0.670 5.670 10 C 0.059 3.941 11 C -0.104 4.104 12 C 0.022 3.978 13 C -0.517 4.517 14 H 0.055 0.945 15 C 0.055 3.945 16 N -0.897 5.897 17 Si 0.892 3.108 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 C 0.484 3.516 22 O -0.488 6.488 23 O -0.512 6.512 24 C 0.191 3.809 25 O -0.295 6.295 26 C 0.026 3.974 27 C -0.248 4.248 28 H 0.059 0.941 29 H 0.100 0.900 30 H 0.058 0.942 31 H 0.133 0.867 32 H 0.148 0.852 33 H 0.351 0.649 34 H 0.071 0.929 35 H 0.029 0.971 36 H 0.046 0.954 37 H 0.059 0.941 38 H 0.016 0.984 39 H 0.014 0.986 40 H 0.260 0.740 41 H 0.402 0.598 42 H 0.055 0.945 43 H 0.101 0.899 44 H 0.056 0.944 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.965 -28.544 8.438 29.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 O -0.231 6.231 3 C 0.125 3.875 4 C -0.265 4.265 5 C -0.039 4.039 6 C -0.167 4.167 7 C 0.045 3.955 8 H 0.109 0.891 9 N -0.305 5.305 10 C -0.069 4.069 11 C -0.142 4.142 12 C -0.016 4.016 13 C -0.555 4.555 14 H 0.074 0.926 15 C -0.146 4.146 16 N -0.537 5.537 17 Si 0.720 3.280 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 C 0.323 3.677 22 O -0.373 6.373 23 O -0.323 6.323 24 C 0.144 3.856 25 O -0.207 6.207 26 C -0.069 4.069 27 C -0.267 4.267 28 H 0.077 0.923 29 H 0.118 0.882 30 H 0.076 0.924 31 H 0.150 0.850 32 H 0.166 0.834 33 H 0.173 0.827 34 H 0.089 0.911 35 H 0.047 0.953 36 H 0.064 0.936 37 H 0.077 0.923 38 H 0.035 0.965 39 H 0.032 0.968 40 H 0.069 0.931 41 H 0.260 0.740 42 H 0.074 0.926 43 H 0.120 0.880 44 H 0.075 0.925 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -0.934 -27.979 8.731 29.324 hybrid contribution -0.348 0.404 -0.541 0.759 sum -1.282 -27.575 8.190 28.794 Atomic orbital electron populations 1.23102 0.77940 1.04005 1.01812 1.86044 1.21774 1.26982 1.88258 1.18727 0.91539 0.84221 0.93051 1.21140 1.00321 0.91823 1.13179 1.20812 0.92720 0.98071 0.92338 1.18760 0.93110 0.91373 1.13420 1.19415 0.96274 0.88900 0.90927 0.89149 1.60184 1.18064 1.07653 1.44626 1.22262 0.97063 0.90555 0.97023 1.21597 0.97352 0.95749 0.99550 1.19064 0.95555 0.91298 0.95633 1.21256 0.93138 1.02200 1.38934 0.92646 1.25031 0.95125 0.98301 0.96117 1.69967 1.13069 1.25745 1.44873 0.86595 0.81450 0.81643 0.78310 1.20680 1.21308 1.19893 1.23272 0.75468 0.80313 0.88649 1.90735 1.53097 1.26658 1.66849 1.84591 1.59608 1.54408 1.33693 1.18384 0.82830 0.92136 0.92279 1.86202 1.14569 1.32426 1.87463 1.23099 0.96961 0.85458 1.01358 1.20289 0.92649 0.97324 1.16470 0.92266 0.88199 0.92353 0.84960 0.83400 0.82715 0.91054 0.95275 0.93565 0.92260 0.96519 0.96780 0.93078 0.74040 0.92621 0.88030 0.92494 0.84453 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.95 10.49 -19.42 -0.20 -3.16 16 3 C 0.17 1.75 6.68 -39.24 -0.26 1.49 16 4 C -0.25 -2.42 9.04 -39.41 -0.36 -2.78 16 5 C -0.02 -0.24 8.86 -39.63 -0.35 -0.59 16 6 C -0.17 -2.03 4.97 -104.45 -0.52 -2.55 16 7 C 0.16 2.19 2.40 -70.01 -0.17 2.02 16 8 H 0.09 1.26 7.51 -51.93 -0.39 0.87 16 9 N -0.67 -10.34 5.14 -109.19 -0.56 -10.90 16 10 C 0.06 1.08 5.38 -3.82 -0.02 1.06 16 11 C -0.10 -2.24 5.41 -26.73 -0.14 -2.39 16 12 C 0.02 0.59 4.97 -27.88 -0.14 0.45 16 13 C -0.52 -15.07 9.11 -34.44 -0.31 -15.38 16 14 H 0.06 1.57 7.74 -52.48 -0.41 1.16 16 15 C 0.05 1.62 5.46 -17.82 -0.10 1.52 16 16 N -0.90 -27.63 13.29 55.43 0.74 -26.89 16 17 Si 0.89 22.16 29.54 -169.99 -5.02 17.14 16 18 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 19 H -0.29 -7.04 7.11 56.52 0.40 -6.63 16 20 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 21 C 0.48 7.25 7.49 36.01 0.27 7.52 16 22 O -0.49 -9.07 16.68 -18.75 -0.31 -9.38 16 23 O -0.51 -5.96 12.18 -43.25 -0.53 -6.48 16 24 C 0.19 2.16 6.42 -39.24 -0.25 1.91 16 25 O -0.29 -3.14 8.78 -28.19 -0.25 -3.38 16 26 C 0.03 0.18 9.81 101.05 0.99 1.17 16 27 C -0.25 -2.55 8.97 -39.29 -0.35 -2.90 16 28 H 0.06 0.29 7.66 -51.93 -0.40 -0.10 16 29 H 0.10 0.36 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.29 7.66 -51.93 -0.40 -0.11 16 31 H 0.13 1.01 6.29 -52.49 -0.33 0.68 16 32 H 0.15 1.61 6.70 -52.49 -0.35 1.26 16 33 H 0.35 4.75 6.97 -39.29 -0.27 4.48 16 34 H 0.07 1.42 7.62 -51.93 -0.40 1.03 16 35 H 0.03 0.51 8.05 -51.93 -0.42 0.09 16 36 H 0.05 0.94 8.14 -51.93 -0.42 0.52 16 37 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 38 H 0.02 0.47 8.14 -51.92 -0.42 0.05 16 39 H 0.01 0.39 8.14 -51.93 -0.42 -0.04 16 40 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.40 3.01 9.10 45.56 0.41 3.43 16 42 H 0.06 0.32 7.66 -51.93 -0.40 -0.08 16 43 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 44 H 0.06 0.33 7.66 -51.93 -0.40 -0.07 16 45 H 0.14 1.17 6.30 -52.48 -0.33 0.83 16 LS Contribution 376.31 15.07 5.67 5.67 Total: -1.00 -36.01 376.31 -6.93 -42.94 By element: Atomic # 1 Polarization: 8.50 SS G_CDS: -5.74 Total: 2.75 kcal Atomic # 6 Polarization: -7.58 SS G_CDS: -0.72 Total: -8.30 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: 0.18 Total: -37.79 kcal Atomic # 8 Polarization: -21.12 SS G_CDS: -1.29 Total: -22.41 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -5.02 Total: 17.14 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -36.01 -6.93 -42.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607233699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -95.030 kcal (2) G-P(sol) polarization free energy of solvation -36.008 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -131.038 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.933 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.940 kcal (6) G-S(sol) free energy of system = (1) + (5) -137.970 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds