Wall clock time and date at job start Tue Mar 31 2020 14:01:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.35898 * 117.00072 * 2 1 4 4 C 1.38797 * 120.02645 * 0.02562 * 3 2 1 5 5 C 1.38153 * 120.05322 * 179.97438 * 4 3 2 6 6 C 1.38201 * 120.11049 * 359.97438 * 5 4 3 7 7 C 1.50697 * 119.97374 * 180.02562 * 6 5 4 8 8 H 1.08997 * 109.47022 * 219.99909 * 7 6 5 9 9 N 1.46903 * 109.47016 * 339.99934 * 7 6 5 10 10 C 1.46905 * 110.99941 * 205.00409 * 9 7 6 11 11 C 1.52997 * 109.46757 * 179.97438 * 10 9 7 12 12 C 1.53003 * 109.46800 * 179.97438 * 11 10 9 13 13 C 1.50703 * 109.47199 * 180.02562 * 12 11 10 14 14 H 1.08004 * 120.00027 * 359.97438 * 13 12 11 15 15 C 1.37878 * 119.99842 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00183 * 0.02562 * 15 13 12 17 17 Si 1.86801 * 119.99445 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47072 * 90.00968 * 17 15 13 19 19 H 1.48508 * 109.46916 * 210.00173 * 17 15 13 20 20 H 1.48497 * 109.47552 * 330.00111 * 17 15 13 21 21 C 1.50704 * 109.47285 * 99.99658 * 7 6 5 22 22 O 1.20822 * 119.99963 * 240.00261 * 21 7 6 23 23 O 1.34228 * 119.99708 * 60.00198 * 21 7 6 24 24 C 1.38750 * 120.05532 * 0.02562 * 6 5 4 25 25 O 1.35900 * 120.02845 * 180.02562 * 24 6 5 26 26 C 1.42903 * 116.99934 * 179.97438 * 25 24 6 27 27 C 1.38615 * 120.02764 * 179.97438 * 3 2 1 28 28 H 1.09003 * 109.46850 * 60.00726 * 1 2 3 29 29 H 1.09002 * 109.46749 * 180.02562 * 1 2 3 30 30 H 1.08997 * 109.47251 * 300.00322 * 1 2 3 31 31 H 1.07992 * 119.96978 * 359.95936 * 4 3 2 32 32 H 1.07999 * 119.94483 * 179.97438 * 5 4 3 33 33 H 1.00906 * 110.99722 * 328.95082 * 9 7 6 34 34 H 1.09001 * 109.46402 * 299.99316 * 10 9 7 35 35 H 1.08995 * 109.47003 * 59.99746 * 10 9 7 36 36 H 1.09000 * 109.47440 * 299.99736 * 11 10 9 37 37 H 1.08995 * 109.47424 * 60.00184 * 11 10 9 38 38 H 1.09010 * 109.46986 * 299.99580 * 12 11 10 39 39 H 1.08997 * 109.47593 * 59.99660 * 12 11 10 40 40 H 0.96996 * 120.00052 * 179.97438 * 16 15 13 41 41 H 0.96700 * 116.99512 * 180.02562 * 23 21 7 42 42 H 1.08997 * 109.47042 * 59.99597 * 26 25 24 43 43 H 1.08997 * 109.47120 * 179.97438 * 26 25 24 44 44 H 1.08997 * 109.46951 * 299.99975 * 26 25 24 45 45 H 1.08004 * 120.05142 * 359.74932 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2906 2.3753 0.0005 5 6 1.9172 3.6065 0.0011 6 6 3.2972 3.6821 0.0016 7 6 3.9775 5.0268 0.0028 8 1 4.8442 4.9960 -0.6575 9 7 3.0374 6.0516 -0.4706 10 6 3.7540 7.1995 -1.0423 11 6 2.7438 8.2429 -1.5237 12 6 3.4902 9.4387 -2.1186 13 6 2.4952 10.4668 -2.5923 14 1 1.4364 10.2852 -2.4806 15 6 2.9367 11.6392 -3.1682 16 7 4.2259 11.8600 -3.3047 17 14 1.7033 12.9131 -3.7559 18 1 1.4047 13.8595 -2.6512 19 1 2.2728 13.6594 -4.9066 20 1 0.4521 12.2333 -4.1773 21 6 4.4239 5.3627 1.4024 22 8 4.0022 6.3541 1.9494 23 8 5.2900 4.5606 2.0413 24 6 4.0567 2.5210 0.0011 25 8 5.4137 2.5960 0.0021 26 6 6.1317 1.3604 0.0021 27 6 3.4302 1.2840 0.0005 28 1 -0.3633 0.5137 -0.8901 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8899 31 1 0.2121 2.3187 0.0003 32 1 1.3277 4.5114 0.0011 33 1 2.3854 5.6643 -1.1363 34 1 4.3983 7.6408 -0.2819 35 1 4.3608 6.8663 -1.8842 36 1 2.0997 7.8013 -2.2841 37 1 2.1367 8.5761 -0.6821 38 1 4.1340 9.8803 -1.3578 39 1 4.0977 9.1059 -2.9601 40 1 4.5364 12.6846 -3.7102 41 1 5.5466 4.8171 2.9376 42 1 5.8706 0.7886 -0.8883 43 1 7.2027 1.5627 0.0025 44 1 5.8693 0.7877 0.8916 45 1 4.0196 0.3791 0.0050 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607233699.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:01:24 Heat of formation + Delta-G solvation = -163.415871 kcal Electronic energy + Delta-G solvation = -27284.042547 eV Core-core repulsion = 23266.435958 eV Total energy + Delta-G solvation = -4017.606589 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -41.90901 -40.96681 -39.89674 -38.41527 -37.24389 -36.78682 -35.49501 -33.66832 -31.60606 -31.33282 -29.03290 -28.08560 -27.70929 -27.05069 -24.48871 -23.49604 -22.85476 -22.03361 -21.51048 -19.73106 -19.06704 -18.51277 -17.84745 -17.80141 -17.32991 -17.10759 -16.76588 -16.54077 -16.35979 -16.31903 -16.05054 -15.55230 -15.45722 -15.27180 -14.47202 -14.40862 -14.06295 -13.94415 -13.70483 -13.51551 -13.29668 -13.09176 -12.96547 -12.71149 -12.50199 -12.45162 -12.41827 -12.31337 -12.18227 -11.89146 -11.73736 -11.55498 -11.41619 -11.38411 -11.11565 -10.54499 -9.61978 -9.60845 -9.03987 -8.18963 -6.30009 0.20928 0.35870 1.29023 1.40600 1.42784 1.53777 2.02779 2.17600 2.42113 2.44742 2.65656 3.11410 3.14143 3.57603 3.78252 4.03479 4.13943 4.17655 4.21203 4.25326 4.32032 4.42605 4.45439 4.46144 4.48434 4.59035 4.66116 4.68748 4.79004 4.81447 4.93140 4.98786 5.05075 5.24284 5.27901 5.32904 5.51198 5.53510 5.66676 5.75100 5.83336 5.87196 6.25425 6.26818 6.31885 6.43889 6.86711 7.11394 7.39014 8.93306 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.015251 B = 0.002615 C = 0.002388 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1835.507531 B =10706.523488 C =11720.989137 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.328 6.328 3 C 0.168 3.832 4 C -0.245 4.245 5 C -0.027 4.027 6 C -0.183 4.183 7 C 0.160 3.840 8 H 0.091 0.909 9 N -0.670 5.670 10 C 0.074 3.926 11 C -0.089 4.089 12 C 0.026 3.974 13 C -0.541 4.541 14 H 0.061 0.939 15 C -0.003 4.003 16 N -0.935 5.935 17 Si 0.968 3.032 18 H -0.274 1.274 19 H -0.281 1.281 20 H -0.261 1.261 21 C 0.488 3.512 22 O -0.533 6.533 23 O -0.501 6.501 24 C 0.188 3.812 25 O -0.312 6.312 26 C 0.018 3.982 27 C -0.252 4.252 28 H 0.067 0.933 29 H 0.121 0.879 30 H 0.065 0.935 31 H 0.154 0.846 32 H 0.147 0.853 33 H 0.363 0.637 34 H 0.050 0.950 35 H 0.036 0.964 36 H 0.061 0.939 37 H 0.050 0.950 38 H -0.015 1.015 39 H -0.005 1.005 40 H 0.263 0.737 41 H 0.421 0.579 42 H 0.065 0.935 43 H 0.117 0.883 44 H 0.066 0.934 45 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.360 -30.276 8.234 31.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 O -0.242 6.242 3 C 0.122 3.878 4 C -0.263 4.263 5 C -0.046 4.046 6 C -0.185 4.185 7 C 0.048 3.952 8 H 0.109 0.891 9 N -0.306 5.306 10 C -0.055 4.055 11 C -0.127 4.127 12 C -0.012 4.012 13 C -0.579 4.579 14 H 0.080 0.920 15 C -0.201 4.201 16 N -0.576 5.576 17 Si 0.792 3.208 18 H -0.200 1.200 19 H -0.206 1.206 20 H -0.185 1.185 21 C 0.329 3.671 22 O -0.421 6.421 23 O -0.313 6.313 24 C 0.141 3.859 25 O -0.225 6.225 26 C -0.076 4.076 27 C -0.272 4.272 28 H 0.085 0.915 29 H 0.139 0.861 30 H 0.084 0.916 31 H 0.171 0.829 32 H 0.165 0.835 33 H 0.186 0.814 34 H 0.068 0.932 35 H 0.054 0.946 36 H 0.079 0.921 37 H 0.068 0.932 38 H 0.004 0.996 39 H 0.013 0.987 40 H 0.072 0.928 41 H 0.281 0.719 42 H 0.084 0.916 43 H 0.135 0.865 44 H 0.085 0.915 45 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -2.325 -29.762 8.541 31.051 hybrid contribution 0.139 0.793 -0.429 0.912 sum -2.187 -28.969 8.113 30.163 Atomic orbital electron populations 1.23401 0.76071 1.05759 1.02549 1.86040 1.23734 1.26440 1.87945 1.18886 0.91775 0.84762 0.92385 1.21337 1.01445 0.91147 1.12397 1.20861 0.92392 0.98688 0.92632 1.18683 0.93647 0.90584 1.15549 1.19363 0.96116 0.89404 0.90291 0.89146 1.60010 1.18354 1.07609 1.44656 1.21906 0.96029 0.90952 0.96600 1.21331 0.97418 0.94689 0.99246 1.18964 0.95077 0.92997 0.94175 1.21697 0.93815 1.03190 1.39243 0.92036 1.26025 0.97238 1.00728 0.96085 1.70105 1.15268 1.26611 1.45582 0.85412 0.79010 0.78520 0.77890 1.19960 1.20626 1.18469 1.23493 0.75007 0.79611 0.88979 1.90720 1.54910 1.28481 1.68012 1.84547 1.58376 1.53359 1.34999 1.18414 0.83240 0.92111 0.92150 1.86175 1.14364 1.34583 1.87359 1.23365 0.97427 0.84503 1.02326 1.20478 0.93049 0.97507 1.16125 0.91486 0.86085 0.91608 0.82854 0.83515 0.81386 0.93153 0.94567 0.92063 0.93155 0.99626 0.98682 0.92784 0.71875 0.91608 0.86510 0.91519 0.82903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.14 9.81 113.37 1.11 1.25 16 2 O -0.33 -5.38 10.49 -92.40 -0.97 -6.35 16 3 C 0.17 3.15 6.68 22.49 0.15 3.30 16 4 C -0.24 -4.39 9.04 22.38 0.20 -4.19 16 5 C -0.03 -0.59 8.86 22.24 0.20 -0.39 16 6 C -0.18 -4.37 4.97 -19.75 -0.10 -4.47 16 7 C 0.16 4.45 2.40 43.42 0.10 4.56 16 8 H 0.09 2.52 7.51 -2.39 -0.02 2.50 16 9 N -0.67 -20.70 5.14 -499.35 -2.57 -23.27 16 10 C 0.07 2.76 5.38 86.30 0.46 3.22 16 11 C -0.09 -3.87 5.41 30.59 0.17 -3.71 16 12 C 0.03 1.41 4.97 29.85 0.15 1.56 16 13 C -0.54 -31.95 9.11 25.60 0.23 -31.72 16 14 H 0.06 3.47 7.74 -2.91 -0.02 3.45 16 15 C 0.00 -0.20 5.46 84.66 0.46 0.26 16 16 N -0.94 -58.63 13.29 21.45 0.28 -58.35 16 17 Si 0.97 45.42 29.54 68.60 2.03 47.44 16 18 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 19 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 20 H -0.26 -11.59 7.11 99.48 0.71 -10.88 16 21 C 0.49 14.67 7.49 71.24 0.53 15.20 16 22 O -0.53 -20.20 16.68 21.98 0.37 -19.84 16 23 O -0.50 -11.29 12.18 -47.57 -0.58 -11.87 16 24 C 0.19 4.05 6.42 22.49 0.14 4.20 16 25 O -0.31 -6.29 8.78 -84.05 -0.74 -7.02 16 26 C 0.02 0.21 9.81 113.37 1.11 1.32 16 27 C -0.25 -4.76 8.97 22.46 0.20 -4.56 16 28 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 29 H 0.12 0.52 8.14 -2.39 -0.02 0.51 16 30 H 0.07 0.49 7.66 -2.39 -0.02 0.47 16 31 H 0.15 1.98 6.29 -2.91 -0.02 1.96 16 32 H 0.15 3.08 6.70 -2.91 -0.02 3.06 16 33 H 0.36 9.62 6.97 -89.69 -0.63 9.00 16 34 H 0.05 2.09 7.62 -2.39 -0.02 2.07 16 35 H 0.04 1.29 8.05 -2.39 -0.02 1.27 16 36 H 0.06 2.46 8.14 -2.39 -0.02 2.45 16 37 H 0.05 2.27 8.14 -2.39 -0.02 2.25 16 38 H -0.01 -0.89 8.14 -2.38 -0.02 -0.91 16 39 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 40 H 0.26 15.45 8.31 -92.71 -0.77 14.68 16 41 H 0.42 5.92 9.10 -74.06 -0.67 5.25 16 42 H 0.07 0.63 7.66 -2.39 -0.02 0.61 16 43 H 0.12 0.96 8.14 -2.39 -0.02 0.94 16 44 H 0.07 0.64 7.66 -2.39 -0.02 0.62 16 45 H 0.15 2.28 6.30 -2.91 -0.02 2.26 16 Total: -1.00 -78.29 376.31 2.69 -75.60 By element: Atomic # 1 Polarization: 18.07 SS G_CDS: -0.27 Total: 17.80 kcal Atomic # 6 Polarization: -19.29 SS G_CDS: 5.13 Total: -14.15 kcal Atomic # 7 Polarization: -79.33 SS G_CDS: -2.28 Total: -81.62 kcal Atomic # 8 Polarization: -43.16 SS G_CDS: -1.92 Total: -45.08 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.44 kcal Total: -78.29 2.69 -75.60 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607233699.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -87.813 kcal (2) G-P(sol) polarization free energy of solvation -78.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.102 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.602 kcal (6) G-S(sol) free energy of system = (1) + (5) -163.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds