Wall clock time and date at job start Tue Mar 31 2020 13:55:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35894 * 117.00221 * 2 1 4 4 C 1.38736 * 120.05935 * 180.02562 * 3 2 1 5 5 C 1.38140 * 119.94417 * 180.02562 * 4 3 2 6 6 C 1.38263 * 120.05845 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.94637 * 179.97438 * 6 5 4 8 8 O 1.42898 * 109.46749 * 90.00078 * 7 6 5 9 9 C 1.42905 * 113.99704 * 179.97438 * 8 7 6 10 10 C 1.53002 * 109.46975 * 180.02562 * 9 8 7 11 11 N 1.46502 * 109.47145 * 63.61970 * 10 9 8 12 12 C 1.36932 * 120.00520 * 264.24921 * 11 10 9 13 13 H 1.08001 * 120.00083 * 146.90462 * 12 11 10 14 14 C 1.38813 * 119.99740 * 326.90951 * 12 11 10 15 15 N 1.31620 * 120.00082 * 155.04885 * 14 12 11 16 16 Si 1.86801 * 119.99995 * 335.04364 * 14 12 11 17 17 H 1.48497 * 109.47336 * 95.23565 * 16 14 12 18 18 H 1.48498 * 109.46942 * 215.23372 * 16 14 12 19 19 H 1.48503 * 109.47156 * 335.23250 * 16 14 12 20 20 C 1.46509 * 119.99420 * 84.25016 * 11 10 9 21 21 C 1.52997 * 109.46918 * 86.43999 * 20 11 10 22 22 C 1.50702 * 109.47048 * 183.69907 * 21 20 11 23 23 O 1.20823 * 119.99810 * 0.02562 * 22 21 20 24 24 O 1.34230 * 120.00199 * 180.02562 * 22 21 20 25 25 C 1.38266 * 120.11356 * 0.25793 * 6 5 4 26 26 C 1.38149 * 120.04895 * 359.44694 * 25 6 5 27 27 H 1.08998 * 109.47165 * 299.99785 * 1 2 3 28 28 H 1.08999 * 109.47451 * 60.00209 * 1 2 3 29 29 H 1.08997 * 109.47289 * 180.02562 * 1 2 3 30 30 H 1.08001 * 120.02247 * 0.02562 * 4 3 2 31 31 H 1.08007 * 119.97158 * 180.02562 * 5 4 3 32 32 H 1.09002 * 109.46784 * 330.00834 * 7 6 5 33 33 H 1.08995 * 109.47646 * 210.00606 * 7 6 5 34 34 H 1.08997 * 109.47316 * 300.00400 * 9 8 7 35 35 H 1.09002 * 109.46988 * 60.01060 * 9 8 7 36 36 H 1.08994 * 109.47249 * 183.62349 * 10 9 8 37 37 H 1.09002 * 109.47175 * 303.62203 * 10 9 8 38 38 H 0.96998 * 120.00421 * 179.97438 * 15 14 12 39 39 H 1.08995 * 109.46555 * 206.43918 * 20 11 10 40 40 H 1.08998 * 109.46958 * 326.43927 * 20 11 10 41 41 H 1.08999 * 109.47684 * 303.70283 * 21 20 11 42 42 H 1.09001 * 109.46998 * 63.70358 * 21 20 11 43 43 H 0.96695 * 116.99634 * 180.02562 * 24 22 21 44 44 H 1.07997 * 119.97416 * 179.69980 * 25 6 5 45 45 H 1.08002 * 120.02484 * 180.25317 * 26 25 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4313 1.2848 -0.0005 5 6 4.0560 2.5169 0.0000 6 6 3.3019 3.6757 0.0016 7 6 3.9861 5.0185 0.0028 8 8 4.2016 5.4443 -1.3441 9 6 4.8478 6.7140 -1.4559 10 6 5.0257 7.0674 -2.9339 11 7 3.7106 7.2132 -3.5628 12 6 3.1520 6.1587 -4.2344 13 1 2.0803 6.0251 -4.2342 14 6 3.9632 5.2616 -4.9155 15 7 3.5461 4.0326 -5.1347 16 14 5.6468 5.7985 -5.5210 17 1 6.6771 5.4173 -4.5218 18 1 5.9426 5.1332 -6.8153 19 1 5.6592 7.2717 -5.7075 20 6 2.9931 8.4875 -3.4732 21 6 3.4417 9.4064 -4.6112 22 6 2.7721 10.7487 -4.4666 23 8 2.0142 10.9498 -3.5474 24 8 3.0175 11.7209 -5.3590 25 6 1.9211 3.6048 0.0081 26 6 1.2915 2.3751 0.0014 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 -0.3634 -1.0276 0.0005 30 1 4.0208 0.3798 -0.0014 31 1 5.1346 2.5750 -0.0008 32 1 4.9443 4.9375 0.5160 33 1 3.3584 5.7457 0.5177 34 1 4.2376 7.4762 -0.9713 35 1 5.8239 6.6687 -0.9729 36 1 5.5755 8.0046 -3.0198 37 1 5.5810 6.2733 -3.4330 38 1 4.1128 3.4057 -5.6109 39 1 1.9212 8.3071 -3.5529 40 1 3.2118 8.9610 -2.5161 41 1 4.5235 9.5338 -4.5705 42 1 3.1638 8.9629 -5.5673 43 1 2.5650 12.5648 -5.2244 44 1 1.3343 4.5114 0.0142 45 1 0.2129 2.3202 0.0023 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607261929.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:55:26 Heat of formation + Delta-G solvation = -141.235542 kcal Electronic energy + Delta-G solvation = -27385.114653 eV Core-core repulsion = 23368.469876 eV Total energy + Delta-G solvation = -4016.644777 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.16195 -41.06875 -39.30921 -38.37157 -37.34427 -36.91527 -33.93721 -32.81358 -32.08151 -31.72743 -29.80216 -28.41025 -26.67753 -26.13893 -24.44189 -23.61352 -22.89588 -22.12352 -21.22225 -19.12579 -19.07562 -18.72057 -17.69917 -17.58639 -17.29759 -17.06906 -16.88634 -16.64549 -16.57161 -16.13103 -15.46035 -15.37014 -15.00623 -14.78628 -14.58020 -14.39538 -14.28857 -13.88725 -13.85242 -13.56647 -13.28194 -13.02417 -12.89337 -12.76099 -12.66823 -12.48035 -12.29059 -12.15404 -11.90007 -11.75900 -11.74460 -11.61692 -11.54527 -11.34792 -10.51917 -10.28556 -9.93827 -9.12406 -8.81503 -8.03955 -5.36919 0.37905 0.41409 1.28221 1.37500 1.47518 1.57120 2.20434 2.36317 2.53780 2.64086 3.13488 3.31055 3.56675 3.81773 3.92727 4.02998 4.13181 4.20932 4.22060 4.35449 4.37733 4.41026 4.43661 4.46406 4.56611 4.61914 4.63632 4.68672 4.72383 4.73126 4.76306 4.81618 5.01532 5.06404 5.09037 5.27771 5.28151 5.37108 5.67489 5.68865 5.80060 6.01519 6.26846 6.43143 6.61758 7.03806 7.10542 7.74960 8.11366 9.15931 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.013695 B = 0.003257 C = 0.003044 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2043.995453 B = 8593.721311 C = 9197.369226 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.333 6.333 3 C 0.116 3.884 4 C -0.168 4.168 5 C -0.069 4.069 6 C -0.134 4.134 7 C 0.103 3.897 8 O -0.384 6.384 9 C 0.045 3.955 10 C 0.121 3.879 11 N -0.601 5.601 12 C -0.235 4.235 13 H 0.031 0.969 14 C -0.015 4.015 15 N -0.945 5.945 16 Si 0.932 3.068 17 H -0.280 1.280 18 H -0.318 1.318 19 H -0.242 1.242 20 C 0.167 3.833 21 C -0.134 4.134 22 C 0.495 3.505 23 O -0.551 6.551 24 O -0.514 6.514 25 C -0.069 4.069 26 C -0.214 4.214 27 H 0.068 0.932 28 H 0.053 0.947 29 H 0.124 0.876 30 H 0.143 0.857 31 H 0.141 0.859 32 H 0.068 0.932 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.091 0.909 37 H 0.043 0.957 38 H 0.255 0.745 39 H 0.042 0.958 40 H 0.064 0.936 41 H 0.112 0.888 42 H 0.099 0.901 43 H 0.425 0.575 44 H 0.128 0.872 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.339 4.098 10.773 11.531 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.247 6.247 3 C 0.071 3.929 4 C -0.186 4.186 5 C -0.087 4.087 6 C -0.134 4.134 7 C 0.026 3.974 8 O -0.304 6.304 9 C -0.033 4.033 10 C -0.004 4.004 11 N -0.323 5.323 12 C -0.365 4.365 13 H 0.049 0.951 14 C -0.211 4.211 15 N -0.589 5.589 16 Si 0.762 3.238 17 H -0.208 1.208 18 H -0.248 1.248 19 H -0.165 1.165 20 C 0.041 3.959 21 C -0.174 4.174 22 C 0.339 3.661 23 O -0.442 6.442 24 O -0.328 6.328 25 C -0.087 4.087 26 C -0.233 4.233 27 H 0.087 0.913 28 H 0.072 0.928 29 H 0.142 0.858 30 H 0.161 0.839 31 H 0.159 0.841 32 H 0.086 0.914 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.081 0.919 36 H 0.109 0.891 37 H 0.061 0.939 38 H 0.064 0.936 39 H 0.060 0.940 40 H 0.083 0.917 41 H 0.130 0.870 42 H 0.117 0.883 43 H 0.286 0.714 44 H 0.146 0.854 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.366 3.355 10.738 11.256 hybrid contribution 0.008 0.506 -0.439 0.670 sum 0.375 3.862 10.300 11.006 Atomic orbital electron populations 1.23337 0.76594 1.05653 1.02031 1.86013 1.23421 1.26573 1.88717 1.19201 0.92741 0.84620 0.96316 1.20617 0.91815 0.99018 1.07155 1.21051 1.00572 0.90978 0.96051 1.19759 0.94019 0.95104 1.04562 1.21312 0.98924 0.92201 0.84921 1.88314 1.80386 1.36511 1.25158 1.23229 0.96085 0.85239 0.98774 1.21550 0.87420 0.99912 0.91479 1.44075 1.19332 1.08515 1.60367 1.18370 0.91405 1.02029 1.24651 0.95076 1.25834 1.01286 0.95151 0.98795 1.70071 1.39973 1.04402 1.44483 0.86069 0.81632 0.80051 0.76095 1.20790 1.24779 1.16483 1.20657 0.95717 0.84217 0.95288 1.22154 1.02583 0.88294 1.04379 1.23639 0.78040 0.86540 0.77921 1.90680 1.36665 1.82565 1.34271 1.84549 1.68772 1.26541 1.52921 1.21021 0.94236 0.97727 0.95753 1.21402 1.01002 0.91934 1.08946 0.91293 0.92812 0.85797 0.83927 0.84097 0.91390 0.92323 0.93043 0.91937 0.89073 0.93874 0.93588 0.93981 0.91725 0.86956 0.88321 0.71386 0.85419 0.83593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.35 9.81 113.37 1.11 1.47 16 2 O -0.33 -9.55 10.50 -92.35 -0.97 -10.52 16 3 C 0.12 3.75 6.69 22.51 0.15 3.90 16 4 C -0.17 -5.36 9.99 22.37 0.22 -5.14 16 5 C -0.07 -2.25 9.69 22.25 0.22 -2.03 16 6 C -0.13 -4.69 5.51 -19.85 -0.11 -4.79 16 7 C 0.10 3.37 6.06 71.24 0.43 3.81 16 8 O -0.38 -16.29 10.02 -148.98 -1.49 -17.78 16 9 C 0.05 1.58 6.28 71.98 0.45 2.03 16 10 C 0.12 4.74 4.76 86.38 0.41 5.15 16 11 N -0.60 -26.75 2.10 -701.99 -1.47 -28.22 16 12 C -0.23 -13.09 9.67 84.03 0.81 -12.27 16 13 H 0.03 1.99 8.06 -2.91 -0.02 1.97 16 14 C -0.01 -0.85 5.26 84.86 0.45 -0.40 16 15 N -0.94 -60.17 13.97 21.65 0.30 -59.87 16 16 Si 0.93 44.81 25.03 68.60 1.72 46.53 16 17 H -0.28 -13.04 6.62 99.48 0.66 -12.38 16 18 H -0.32 -15.93 7.11 99.48 0.71 -15.23 16 19 H -0.24 -10.30 7.11 99.48 0.71 -9.59 16 20 C 0.17 6.27 5.02 86.38 0.43 6.70 16 21 C -0.13 -4.20 6.14 29.85 0.18 -4.01 16 22 C 0.49 14.03 8.33 71.24 0.59 14.63 16 23 O -0.55 -18.57 16.70 21.97 0.37 -18.20 16 24 O -0.51 -11.01 13.42 -51.42 -0.69 -11.70 16 25 C -0.07 -2.36 9.69 22.26 0.22 -2.15 16 26 C -0.21 -6.74 9.04 22.37 0.20 -6.54 16 27 H 0.07 1.12 7.66 -2.39 -0.02 1.10 16 28 H 0.05 1.09 7.66 -2.39 -0.02 1.07 16 29 H 0.12 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 31 H 0.14 4.02 8.06 -2.91 -0.02 4.00 16 32 H 0.07 1.86 8.08 -2.39 -0.02 1.84 16 33 H 0.06 1.73 8.08 -2.39 -0.02 1.71 16 34 H 0.05 1.64 8.05 -2.39 -0.02 1.62 16 35 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 36 H 0.09 2.82 8.11 -2.39 -0.02 2.80 16 37 H 0.04 1.94 3.16 -2.39 -0.01 1.93 16 38 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 39 H 0.04 1.74 8.01 -2.39 -0.02 1.72 16 40 H 0.06 2.20 7.86 -2.39 -0.02 2.18 16 41 H 0.11 3.14 8.14 -2.39 -0.02 3.12 16 42 H 0.10 3.32 8.14 -2.39 -0.02 3.31 16 43 H 0.42 4.94 9.10 -74.06 -0.67 4.26 16 44 H 0.13 4.08 8.06 -2.91 -0.02 4.06 16 45 H 0.15 3.77 6.30 -2.91 -0.02 3.75 16 Total: -1.00 -77.80 379.70 3.82 -73.99 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.28 Total: 25.45 kcal Atomic # 6 Polarization: -5.45 SS G_CDS: 5.77 Total: 0.33 kcal Atomic # 7 Polarization: -86.92 SS G_CDS: -1.17 Total: -88.09 kcal Atomic # 8 Polarization: -55.42 SS G_CDS: -2.78 Total: -58.21 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 1.72 Total: 46.53 kcal Total: -77.80 3.82 -73.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607261929.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.248 kcal (2) G-P(sol) polarization free energy of solvation -77.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -145.052 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.816 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds