Wall clock time and date at job start Tue Mar 31 2020 14:32:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38043 * 126.28768 * 2 1 4 4 C 1.47430 * 126.41859 * 0.05975 * 3 2 1 5 5 O 1.21604 * 119.99632 * 329.38349 * 4 3 2 6 6 N 1.34773 * 120.00537 * 149.37483 * 4 3 2 7 7 C 1.46502 * 119.99676 * 6.13366 * 6 4 3 8 8 C 1.46500 * 120.00244 * 186.13029 * 6 4 3 9 9 C 1.52999 * 109.47305 * 300.00090 * 8 6 4 10 10 C 1.53001 * 109.46854 * 60.00500 * 8 6 4 11 11 C 1.53003 * 109.47107 * 180.02562 * 8 6 4 12 12 C 1.50692 * 109.47179 * 179.97438 * 11 8 6 13 13 O 1.20826 * 120.00168 * 0.02562 * 12 11 8 14 14 O 1.34234 * 120.00132 * 179.97438 * 12 11 8 15 15 C 1.41286 * 107.17007 * 180.02562 * 3 2 1 16 16 N 1.30445 * 108.02195 * 359.73866 * 15 3 2 17 17 N 1.34257 * 126.29587 * 180.02562 * 2 1 3 18 18 C 1.46502 * 125.75248 * 359.95240 * 17 2 1 19 19 C 1.50698 * 109.47262 * 90.00346 * 18 17 2 20 20 H 1.08001 * 119.99719 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00152 * 179.72651 * 19 18 17 22 22 N 1.31515 * 120.00020 * 0.27295 * 21 19 18 23 23 Si 1.86800 * 120.00006 * 180.27501 * 21 19 18 24 24 H 1.48500 * 109.47180 * 59.99608 * 23 21 19 25 25 H 1.48490 * 109.47159 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46955 * 300.00033 * 23 21 19 27 27 H 1.09003 * 109.47150 * 269.99434 * 1 2 3 28 28 H 1.08993 * 109.47479 * 29.99721 * 1 2 3 29 29 H 1.09000 * 109.46842 * 150.00347 * 1 2 3 30 30 H 1.08998 * 109.47416 * 96.17259 * 7 6 4 31 31 H 1.08998 * 109.47070 * 216.17448 * 7 6 4 32 32 H 1.09004 * 109.47001 * 336.17038 * 7 6 4 33 33 H 1.09001 * 109.46708 * 59.99968 * 9 8 6 34 34 H 1.08995 * 109.47388 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.47094 * 300.00381 * 9 8 6 36 36 H 1.08997 * 109.47469 * 59.99877 * 10 8 6 37 37 H 1.09000 * 109.46492 * 180.02562 * 10 8 6 38 38 H 1.09002 * 109.47048 * 299.99212 * 10 8 6 39 39 H 1.09003 * 109.46712 * 300.00007 * 11 8 6 40 40 H 1.08999 * 109.46913 * 59.99851 * 11 8 6 41 41 H 0.96704 * 116.99625 * 180.02562 * 14 12 11 42 42 H 1.08010 * 125.98857 * 179.97438 * 15 3 2 43 43 H 1.09004 * 109.47265 * 330.00161 * 18 17 2 44 44 H 1.08995 * 109.47281 * 210.00416 * 18 17 2 45 45 H 0.97001 * 119.99880 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5204 0.0012 5 8 0.8392 2.8317 -0.5341 6 7 2.6448 3.4620 0.5957 7 6 3.9665 3.1125 1.1222 8 6 2.1483 4.8351 0.7154 9 6 1.8792 5.4036 -0.6794 10 6 0.8512 4.8395 1.5269 11 6 3.1961 5.6965 1.4232 12 6 2.6857 7.1090 1.5457 13 8 1.5954 7.3972 1.1119 14 8 3.4418 8.0470 2.1378 15 6 3.6589 0.6500 -0.0006 16 7 3.6340 -0.6542 0.0047 17 7 2.3017 -1.0821 -0.0005 18 6 1.8502 -2.4758 -0.0001 19 6 1.6945 -2.9538 -1.4208 20 1 1.9099 -2.2860 -2.2418 21 6 1.2820 -4.2451 -1.6724 22 7 1.0192 -5.0580 -0.6726 23 14 1.0964 -4.8399 -3.4334 24 1 2.4037 -4.7386 -4.1305 25 1 0.6444 -6.2543 -3.4331 26 1 0.0940 -3.9996 -4.1367 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5137 29 1 -0.3633 -0.8900 -0.5138 30 1 4.7290 3.3609 0.3840 31 1 4.1521 3.6724 2.0388 32 1 4.0017 2.0442 1.3357 33 1 1.1329 4.7900 -1.1840 34 1 1.5094 6.4250 -0.5903 35 1 2.8033 5.4004 -1.2575 36 1 1.0429 4.4345 2.5205 37 1 0.4816 5.8611 1.6155 38 1 0.1048 4.2260 1.0222 39 1 3.3882 5.2916 2.4169 40 1 4.1200 5.6933 0.8448 41 1 3.0716 8.9386 2.1932 42 1 4.5448 1.2679 -0.0012 43 1 0.8919 -2.5471 0.5143 44 1 2.5851 -3.0957 0.5133 45 1 0.7293 -5.9666 -0.8496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607503670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:18 Heat of formation + Delta-G solvation = -38.538743 kcal Electronic energy + Delta-G solvation = -28143.972751 eV Core-core repulsion = 24164.073992 eV Total energy + Delta-G solvation = -3979.898759 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -41.24120 -40.73450 -39.35964 -36.92109 -36.03590 -34.10436 -33.13991 -31.99226 -30.96997 -29.42033 -27.39283 -27.25233 -26.85883 -26.11231 -23.78087 -22.87707 -21.87367 -20.43740 -19.08733 -18.51930 -18.20429 -16.93912 -16.81841 -16.62146 -16.37079 -15.54155 -15.46092 -15.17981 -14.61884 -14.42789 -14.01318 -13.82004 -13.71219 -13.39153 -13.09350 -12.90749 -12.57469 -12.52729 -12.47800 -12.33727 -12.09151 -11.93823 -11.84300 -11.50453 -11.46405 -11.20309 -11.19185 -11.14874 -11.05501 -10.86910 -10.58110 -10.34406 -10.14549 -9.93505 -9.17829 -8.70539 -8.61110 -8.50401 -7.88213 -6.33376 -4.41327 1.83367 2.23112 2.45957 2.79077 3.19952 3.21004 3.24724 3.28817 3.43424 3.74316 4.18956 4.24961 4.57393 4.79851 4.98169 5.01189 5.04288 5.13722 5.19500 5.25457 5.27026 5.46108 5.53901 5.68947 5.75106 5.79265 5.85572 5.89606 5.91624 5.95355 6.02920 6.13016 6.42520 6.47259 6.50824 6.56528 6.73531 6.80229 6.89660 7.16119 7.53441 7.56690 7.60957 7.77455 7.79618 8.38056 8.58180 8.64799 9.25800 10.74681 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030872 B = 0.002669 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.741306 B =10489.809052 C =10772.545705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.102 4.102 2 C 0.160 3.840 3 C -0.329 4.329 4 C 0.610 3.390 5 O -0.542 6.542 6 N -0.613 5.613 7 C 0.054 3.946 8 C 0.194 3.806 9 C -0.177 4.177 10 C -0.174 4.174 11 C -0.119 4.119 12 C 0.484 3.516 13 O -0.500 6.500 14 O -0.518 6.518 15 C 0.047 3.953 16 N -0.296 5.296 17 N -0.313 5.313 18 C 0.252 3.748 19 C -0.541 4.541 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.890 5.890 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.283 1.283 26 H -0.273 1.273 27 H 0.073 0.927 28 H 0.096 0.904 29 H 0.085 0.915 30 H 0.056 0.944 31 H 0.065 0.935 32 H 0.097 0.903 33 H 0.087 0.913 34 H 0.081 0.919 35 H 0.047 0.953 36 H 0.048 0.952 37 H 0.083 0.917 38 H 0.079 0.921 39 H 0.113 0.887 40 H 0.112 0.888 41 H 0.411 0.589 42 H 0.183 0.817 43 H 0.056 0.944 44 H 0.057 0.943 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.936 21.936 7.350 23.655 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.024 3.976 3 C -0.344 4.344 4 C 0.402 3.598 5 O -0.420 6.420 6 N -0.348 5.348 7 C -0.089 4.089 8 C 0.110 3.890 9 C -0.234 4.234 10 C -0.231 4.231 11 C -0.157 4.157 12 C 0.326 3.674 13 O -0.387 6.387 14 O -0.330 6.330 15 C -0.139 4.139 16 N -0.117 5.117 17 N -0.090 5.090 18 C 0.135 3.865 19 C -0.579 4.579 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.527 5.527 23 Si 0.735 3.265 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.198 1.198 27 H 0.092 0.908 28 H 0.115 0.885 29 H 0.104 0.896 30 H 0.074 0.926 31 H 0.084 0.916 32 H 0.115 0.885 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.102 0.898 38 H 0.098 0.902 39 H 0.131 0.869 40 H 0.130 0.870 41 H 0.270 0.730 42 H 0.200 0.800 43 H 0.074 0.926 44 H 0.075 0.925 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.873 20.309 6.980 22.021 hybrid contribution -0.431 0.808 -0.803 1.218 sum 4.442 21.117 6.178 22.446 Atomic orbital electron populations 1.20628 0.87083 1.05325 1.03000 1.21377 0.94796 0.86462 0.95002 1.19629 0.93291 0.92432 1.29047 1.17292 0.82591 0.83644 0.76297 1.90641 1.24639 1.81752 1.44961 1.47705 1.18396 1.08314 1.60337 1.22395 0.83922 1.03924 0.98629 1.19947 0.92377 0.80387 0.96283 1.22510 1.02830 1.03049 0.95051 1.22442 0.97478 1.04302 0.98918 1.21711 1.01139 0.88214 1.04638 1.23145 0.82678 0.88001 0.73613 1.90666 1.21593 1.81786 1.44693 1.84529 1.51230 1.23630 1.73639 1.24044 0.96530 0.92484 1.00803 1.77146 0.98662 1.12272 1.23594 1.49355 1.02461 1.08256 1.48935 1.19832 0.96350 0.70951 0.99392 1.21226 1.47621 0.98043 0.91046 0.91675 1.24919 0.94420 0.95978 0.98296 1.69904 1.44526 1.07136 1.31180 0.86381 0.78923 0.77727 0.83514 1.19897 1.20882 1.19802 0.90823 0.88524 0.89606 0.92595 0.91624 0.88458 0.89405 0.90046 0.93430 0.93271 0.89796 0.90162 0.86881 0.86952 0.73000 0.80029 0.92646 0.92536 0.92061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.82 9.65 36.01 0.35 -1.48 16 2 C 0.16 3.23 7.00 -81.60 -0.57 2.66 16 3 C -0.33 -5.93 5.63 -105.07 -0.59 -6.52 16 4 C 0.61 10.03 6.93 -12.52 -0.09 9.95 16 5 O -0.54 -10.10 11.54 5.27 0.06 -10.04 16 6 N -0.61 -7.60 2.82 -167.85 -0.47 -8.08 16 7 C 0.05 0.49 8.14 59.85 0.49 0.98 16 8 C 0.19 2.18 0.78 -131.82 -0.10 2.08 16 9 C -0.18 -2.22 8.10 37.16 0.30 -1.92 16 10 C -0.17 -2.13 8.11 37.16 0.30 -1.83 16 11 C -0.12 -0.91 3.73 -27.89 -0.10 -1.01 16 12 C 0.48 3.96 7.74 36.00 0.28 4.24 16 13 O -0.50 -5.48 12.11 -18.75 -0.23 -5.71 16 14 O -0.52 -2.97 13.42 -39.27 -0.53 -3.50 16 15 C 0.05 0.81 9.59 -16.98 -0.16 0.65 16 16 N -0.30 -6.27 12.50 30.86 0.39 -5.89 16 17 N -0.31 -7.00 3.56 -57.77 -0.21 -7.20 16 18 C 0.25 6.23 5.78 -5.19 -0.03 6.20 16 19 C -0.54 -14.58 9.39 -34.44 -0.32 -14.91 16 20 H 0.07 1.81 7.81 -52.49 -0.41 1.40 16 21 C 0.07 1.82 5.46 -17.82 -0.10 1.72 16 22 N -0.89 -24.55 13.29 55.43 0.74 -23.82 16 23 Si 0.91 20.90 29.54 -169.99 -5.02 15.87 16 24 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 27 H 0.07 1.16 8.14 -51.93 -0.42 0.73 16 28 H 0.10 1.71 6.47 -51.93 -0.34 1.37 16 29 H 0.09 1.61 7.70 -51.93 -0.40 1.21 16 30 H 0.06 0.41 7.98 -51.93 -0.41 0.00 16 31 H 0.07 0.42 6.04 -51.93 -0.31 0.11 16 32 H 0.10 1.01 4.36 -51.93 -0.23 0.79 16 33 H 0.09 1.35 5.97 -51.93 -0.31 1.04 16 34 H 0.08 1.01 5.52 -51.93 -0.29 0.72 16 35 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 36 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 37 H 0.08 1.02 5.52 -51.93 -0.29 0.73 16 38 H 0.08 1.19 6.38 -51.93 -0.33 0.86 16 39 H 0.11 0.68 6.87 -51.93 -0.36 0.32 16 40 H 0.11 0.68 7.78 -51.93 -0.40 0.28 16 41 H 0.41 0.74 9.10 45.56 0.41 1.15 16 42 H 0.18 2.30 5.94 -52.48 -0.31 1.99 16 43 H 0.06 1.36 7.62 -51.93 -0.40 0.96 16 44 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 45 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 LS Contribution 358.06 15.07 5.40 5.40 Total: -1.00 -32.75 358.06 -5.42 -38.17 By element: Atomic # 1 Polarization: 9.18 SS G_CDS: -5.19 Total: 3.98 kcal Atomic # 6 Polarization: 1.16 SS G_CDS: -0.35 Total: 0.80 kcal Atomic # 7 Polarization: -45.43 SS G_CDS: 0.44 Total: -44.98 kcal Atomic # 8 Polarization: -18.56 SS G_CDS: -0.69 Total: -19.25 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 5.40 Total: 5.40 kcal Total: -32.75 -5.42 -38.17 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607503670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.364 kcal (2) G-P(sol) polarization free energy of solvation -32.751 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.424 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.175 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.539 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds