Wall clock time and date at job start Tue Mar 31 2020 14:32:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38043 * 126.28768 * 2 1 4 4 C 1.47430 * 126.41859 * 0.05975 * 3 2 1 5 5 O 1.21604 * 119.99632 * 329.38349 * 4 3 2 6 6 N 1.34773 * 120.00537 * 149.37483 * 4 3 2 7 7 C 1.46502 * 119.99676 * 6.13366 * 6 4 3 8 8 C 1.46500 * 120.00244 * 186.13029 * 6 4 3 9 9 C 1.52999 * 109.47305 * 300.00090 * 8 6 4 10 10 C 1.53001 * 109.46854 * 60.00500 * 8 6 4 11 11 C 1.53003 * 109.47107 * 180.02562 * 8 6 4 12 12 C 1.50692 * 109.47179 * 179.97438 * 11 8 6 13 13 O 1.20826 * 120.00168 * 0.02562 * 12 11 8 14 14 O 1.34234 * 120.00132 * 179.97438 * 12 11 8 15 15 C 1.41286 * 107.17007 * 180.02562 * 3 2 1 16 16 N 1.30445 * 108.02195 * 359.73866 * 15 3 2 17 17 N 1.34257 * 126.29587 * 180.02562 * 2 1 3 18 18 C 1.46502 * 125.75248 * 359.95240 * 17 2 1 19 19 C 1.50698 * 109.47262 * 90.00346 * 18 17 2 20 20 H 1.08001 * 119.99719 * 359.97438 * 19 18 17 21 21 C 1.37874 * 120.00152 * 179.72651 * 19 18 17 22 22 N 1.31515 * 120.00020 * 0.27295 * 21 19 18 23 23 Si 1.86800 * 120.00006 * 180.27501 * 21 19 18 24 24 H 1.48500 * 109.47180 * 59.99608 * 23 21 19 25 25 H 1.48490 * 109.47159 * 179.97438 * 23 21 19 26 26 H 1.48506 * 109.46955 * 300.00033 * 23 21 19 27 27 H 1.09003 * 109.47150 * 269.99434 * 1 2 3 28 28 H 1.08993 * 109.47479 * 29.99721 * 1 2 3 29 29 H 1.09000 * 109.46842 * 150.00347 * 1 2 3 30 30 H 1.08998 * 109.47416 * 96.17259 * 7 6 4 31 31 H 1.08998 * 109.47070 * 216.17448 * 7 6 4 32 32 H 1.09004 * 109.47001 * 336.17038 * 7 6 4 33 33 H 1.09001 * 109.46708 * 59.99968 * 9 8 6 34 34 H 1.08995 * 109.47388 * 179.97438 * 9 8 6 35 35 H 1.08999 * 109.47094 * 300.00381 * 9 8 6 36 36 H 1.08997 * 109.47469 * 59.99877 * 10 8 6 37 37 H 1.09000 * 109.46492 * 180.02562 * 10 8 6 38 38 H 1.09002 * 109.47048 * 299.99212 * 10 8 6 39 39 H 1.09003 * 109.46712 * 300.00007 * 11 8 6 40 40 H 1.08999 * 109.46913 * 59.99851 * 11 8 6 41 41 H 0.96704 * 116.99625 * 180.02562 * 14 12 11 42 42 H 1.08010 * 125.98857 * 179.97438 * 15 3 2 43 43 H 1.09004 * 109.47265 * 330.00161 * 18 17 2 44 44 H 1.08995 * 109.47281 * 210.00416 * 18 17 2 45 45 H 0.97001 * 119.99880 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8857 2.5204 0.0012 5 8 0.8392 2.8317 -0.5341 6 7 2.6448 3.4620 0.5957 7 6 3.9665 3.1125 1.1222 8 6 2.1483 4.8351 0.7154 9 6 1.8792 5.4036 -0.6794 10 6 0.8512 4.8395 1.5269 11 6 3.1961 5.6965 1.4232 12 6 2.6857 7.1090 1.5457 13 8 1.5954 7.3972 1.1119 14 8 3.4418 8.0470 2.1378 15 6 3.6589 0.6500 -0.0006 16 7 3.6340 -0.6542 0.0047 17 7 2.3017 -1.0821 -0.0005 18 6 1.8502 -2.4758 -0.0001 19 6 1.6945 -2.9538 -1.4208 20 1 1.9099 -2.2860 -2.2418 21 6 1.2820 -4.2451 -1.6724 22 7 1.0192 -5.0580 -0.6726 23 14 1.0964 -4.8399 -3.4334 24 1 2.4037 -4.7386 -4.1305 25 1 0.6444 -6.2543 -3.4331 26 1 0.0940 -3.9996 -4.1367 27 1 -0.3633 -0.0001 1.0277 28 1 -0.3634 0.8899 -0.5137 29 1 -0.3633 -0.8900 -0.5138 30 1 4.7290 3.3609 0.3840 31 1 4.1521 3.6724 2.0388 32 1 4.0017 2.0442 1.3357 33 1 1.1329 4.7900 -1.1840 34 1 1.5094 6.4250 -0.5903 35 1 2.8033 5.4004 -1.2575 36 1 1.0429 4.4345 2.5205 37 1 0.4816 5.8611 1.6155 38 1 0.1048 4.2260 1.0222 39 1 3.3882 5.2916 2.4169 40 1 4.1200 5.6933 0.8448 41 1 3.0716 8.9386 2.1932 42 1 4.5448 1.2679 -0.0012 43 1 0.8919 -2.5471 0.5143 44 1 2.5851 -3.0957 0.5133 45 1 0.7293 -5.9666 -0.8496 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607503670.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:17 Heat of formation + Delta-G solvation = -61.254668 kcal Electronic energy + Delta-G solvation = -28144.957788 eV Core-core repulsion = 24164.073992 eV Total energy + Delta-G solvation = -3980.883795 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.46504 -41.69055 -40.41363 -37.76226 -36.86000 -35.87436 -34.44716 -33.53191 -32.53239 -30.16097 -29.14244 -28.27427 -28.23393 -27.10729 -25.51358 -23.95732 -22.98503 -21.65927 -20.40586 -19.45663 -19.08216 -18.84232 -17.92607 -17.61163 -16.99182 -16.96443 -16.58491 -16.34569 -16.21461 -15.85662 -15.29237 -14.89842 -14.84379 -14.53169 -14.32178 -14.01826 -13.91636 -13.67383 -13.63941 -13.51723 -13.39430 -13.18082 -13.08543 -12.94145 -12.72218 -12.71213 -12.37255 -12.27590 -12.15059 -12.12090 -11.97748 -11.82128 -11.66133 -11.28466 -10.76369 -10.45442 -10.19943 -9.61836 -9.34327 -8.38121 -6.54460 0.74702 1.25895 1.35058 1.38038 1.39475 1.47217 1.61882 1.85468 2.32094 2.37086 2.55181 2.93774 3.40711 3.75545 3.79632 3.88436 4.02836 4.16365 4.22155 4.32519 4.47873 4.51067 4.52306 4.57753 4.61415 4.78457 4.79778 4.86840 4.89270 4.90204 4.97223 4.99853 5.05740 5.06797 5.16747 5.33417 5.43552 5.48791 5.66989 5.75292 5.75427 5.84940 6.07016 6.49958 6.54839 6.86593 7.07048 7.16640 7.36442 8.69295 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.030872 B = 0.002669 C = 0.002599 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 906.741306 B =10489.809052 C =10772.545705 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C 0.139 3.861 3 C -0.325 4.325 4 C 0.606 3.394 5 O -0.571 6.571 6 N -0.601 5.601 7 C 0.042 3.958 8 C 0.192 3.808 9 C -0.171 4.171 10 C -0.169 4.169 11 C -0.115 4.115 12 C 0.489 3.511 13 O -0.536 6.536 14 O -0.510 6.510 15 C 0.072 3.928 16 N -0.336 5.336 17 N -0.338 5.338 18 C 0.269 3.731 19 C -0.557 4.557 20 H 0.049 0.951 21 C 0.025 3.975 22 N -0.915 5.915 23 Si 0.969 3.031 24 H -0.273 1.273 25 H -0.272 1.272 26 H -0.269 1.269 27 H 0.092 0.908 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.052 0.948 34 H 0.081 0.919 35 H 0.057 0.943 36 H 0.059 0.941 37 H 0.083 0.917 38 H 0.047 0.953 39 H 0.139 0.861 40 H 0.139 0.861 41 H 0.429 0.571 42 H 0.231 0.769 43 H 0.049 0.951 44 H 0.033 0.967 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.960 24.000 7.824 26.185 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.004 3.996 3 C -0.341 4.341 4 C 0.396 3.604 5 O -0.452 6.452 6 N -0.334 5.334 7 C -0.099 4.099 8 C 0.108 3.892 9 C -0.229 4.229 10 C -0.227 4.227 11 C -0.152 4.152 12 C 0.333 3.667 13 O -0.426 6.426 14 O -0.324 6.324 15 C -0.114 4.114 16 N -0.156 5.156 17 N -0.115 5.115 18 C 0.150 3.850 19 C -0.595 4.595 20 H 0.068 0.932 21 C -0.176 4.176 22 N -0.553 5.553 23 Si 0.793 3.207 24 H -0.198 1.198 25 H -0.196 1.196 26 H -0.193 1.193 27 H 0.111 0.889 28 H 0.115 0.885 29 H 0.088 0.912 30 H 0.103 0.897 31 H 0.120 0.880 32 H 0.101 0.899 33 H 0.071 0.929 34 H 0.099 0.901 35 H 0.076 0.924 36 H 0.078 0.922 37 H 0.102 0.898 38 H 0.066 0.934 39 H 0.157 0.843 40 H 0.157 0.843 41 H 0.291 0.709 42 H 0.247 0.753 43 H 0.067 0.933 44 H 0.051 0.949 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.935 22.421 7.492 24.636 hybrid contribution -1.008 0.359 -0.874 1.382 sum 5.927 22.780 6.617 24.451 Atomic orbital electron populations 1.20582 0.86271 1.04384 1.03982 1.21847 0.95717 0.86719 0.95299 1.19917 0.93453 0.92987 1.27710 1.17169 0.82735 0.83623 0.76856 1.90645 1.26027 1.82070 1.46445 1.47683 1.19061 1.07982 1.58697 1.22709 0.82441 1.03683 1.01112 1.19975 0.93268 0.80189 0.95749 1.22415 1.02234 1.02363 0.95873 1.22368 0.97464 1.03626 0.99204 1.21681 1.00387 0.87233 1.05884 1.23188 0.82106 0.88529 0.72895 1.90671 1.23174 1.82392 1.46381 1.84480 1.50647 1.24561 1.72711 1.24800 0.97679 0.91388 0.97505 1.77098 0.98281 1.14408 1.25817 1.49072 1.03390 1.07640 1.51446 1.19324 0.95245 0.72456 0.97927 1.21373 1.48118 0.98353 0.91688 0.93248 1.25699 0.93823 0.95938 1.02170 1.69982 1.44832 1.07523 1.32995 0.85441 0.78816 0.77706 0.78784 1.19826 1.19616 1.19349 0.88929 0.88525 0.91197 0.89746 0.87997 0.89867 0.92874 0.90057 0.92373 0.92215 0.89805 0.93419 0.84339 0.84321 0.70932 0.75347 0.93289 0.94927 0.91630 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -3.48 9.65 71.24 0.69 -2.79 16 2 C 0.14 5.72 7.00 42.14 0.29 6.02 16 3 C -0.33 -11.52 5.63 -20.15 -0.11 -11.64 16 4 C 0.61 19.36 6.93 86.67 0.60 19.96 16 5 O -0.57 -21.64 11.54 -4.04 -0.05 -21.69 16 6 N -0.60 -13.29 2.82 -803.22 -2.27 -15.56 16 7 C 0.04 0.56 8.14 127.77 1.04 1.60 16 8 C 0.19 3.87 0.78 3.60 0.00 3.87 16 9 C -0.17 -4.11 8.10 71.98 0.58 -3.53 16 10 C -0.17 -3.98 8.11 71.98 0.58 -3.40 16 11 C -0.11 -1.25 3.73 29.85 0.11 -1.13 16 12 C 0.49 6.43 7.74 71.23 0.55 6.98 16 13 O -0.54 -10.82 12.11 21.96 0.27 -10.55 16 14 O -0.51 -3.93 13.42 -51.46 -0.69 -4.62 16 15 C 0.07 2.34 9.59 85.65 0.82 3.16 16 16 N -0.34 -14.23 12.50 -56.27 -0.70 -14.93 16 17 N -0.34 -15.56 3.56 -336.70 -1.20 -16.76 16 18 C 0.27 13.91 5.78 85.63 0.50 14.40 16 19 C -0.56 -31.00 9.39 25.60 0.24 -30.76 16 20 H 0.05 2.84 7.81 -2.91 -0.02 2.82 16 21 C 0.03 1.37 5.46 84.65 0.46 1.84 16 22 N -0.92 -51.34 13.29 21.45 0.28 -51.06 16 23 Si 0.97 43.11 29.54 68.60 2.03 45.14 16 24 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 25 H -0.27 -11.48 7.11 99.48 0.71 -10.77 16 26 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 27 H 0.09 2.98 8.14 -2.39 -0.02 2.96 16 28 H 0.10 3.55 6.47 -2.39 -0.02 3.53 16 29 H 0.07 2.77 7.70 -2.39 -0.02 2.75 16 30 H 0.08 0.73 7.98 -2.39 -0.02 0.72 16 31 H 0.10 0.69 6.04 -2.39 -0.01 0.67 16 32 H 0.08 1.40 4.36 -2.38 -0.01 1.39 16 33 H 0.05 1.66 5.97 -2.39 -0.01 1.65 16 34 H 0.08 1.96 5.52 -2.39 -0.01 1.95 16 35 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.08 1.99 5.52 -2.39 -0.01 1.98 16 38 H 0.05 1.44 6.38 -2.39 -0.02 1.42 16 39 H 0.14 0.86 6.87 -2.39 -0.02 0.85 16 40 H 0.14 0.86 7.78 -2.39 -0.02 0.84 16 41 H 0.43 0.15 9.10 -74.05 -0.67 -0.52 16 42 H 0.23 4.90 5.94 -2.91 -0.02 4.89 16 43 H 0.05 2.53 7.62 -2.38 -0.02 2.52 16 44 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 45 H 0.27 14.42 8.31 -92.71 -0.77 13.64 16 Total: -1.00 -74.69 358.06 4.40 -70.29 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: 0.37 Total: 15.16 kcal Atomic # 6 Polarization: -1.78 SS G_CDS: 6.36 Total: 4.58 kcal Atomic # 7 Polarization: -94.41 SS G_CDS: -3.89 Total: -98.30 kcal Atomic # 8 Polarization: -36.39 SS G_CDS: -0.47 Total: -36.86 kcal Atomic # 14 Polarization: 43.11 SS G_CDS: 2.03 Total: 45.14 kcal Total: -74.69 4.40 -70.29 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607503670.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.031 kcal (2) G-P(sol) polarization free energy of solvation -74.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.656 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.401 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.255 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds