Wall clock time and date at job start Tue Mar 31 2020 14:29:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38114 * 126.30019 * 2 1 4 4 C 1.47355 * 126.42000 * 359.97438 * 3 2 1 5 5 O 1.21625 * 120.00060 * 320.14538 * 4 3 2 6 6 N 1.34777 * 120.00048 * 139.86419 * 4 3 2 7 7 C 1.36980 * 120.00365 * 185.10953 * 6 4 3 8 8 H 1.08004 * 119.99856 * 223.31394 * 7 6 4 9 9 C 1.38978 * 119.99887 * 43.31090 * 7 6 4 10 10 N 1.31409 * 119.99763 * 354.24603 * 9 7 6 11 11 Si 1.86795 * 119.99838 * 174.24343 * 9 7 6 12 12 H 1.48504 * 109.47308 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47045 * 120.00185 * 11 9 7 14 14 H 1.48501 * 109.47016 * 239.99946 * 11 9 7 15 15 C 1.46502 * 119.99768 * 5.10890 * 6 4 3 16 16 C 1.53006 * 109.46904 * 95.41847 * 15 6 4 17 17 C 1.50701 * 109.46948 * 180.02562 * 16 15 6 18 18 O 1.20817 * 120.00374 * 0.02562 * 17 16 15 19 19 O 1.34230 * 119.99649 * 180.02562 * 17 16 15 20 20 C 1.41313 * 107.15572 * 180.24825 * 3 2 1 21 21 N 1.30445 * 108.02878 * 359.61361 * 20 3 2 22 22 N 1.34284 * 126.29672 * 180.02562 * 2 1 3 23 23 C 1.46504 * 125.75234 * 359.94564 * 22 2 1 24 24 C 1.52996 * 109.46937 * 89.99828 * 23 22 2 25 25 C 1.52999 * 109.46578 * 175.00003 * 24 23 22 26 26 C 1.52994 * 109.47146 * 294.99815 * 24 23 22 27 27 H 1.08996 * 109.47252 * 89.97546 * 1 2 3 28 28 H 1.08999 * 109.46999 * 209.97815 * 1 2 3 29 29 H 1.09007 * 109.46602 * 329.97429 * 1 2 3 30 30 H 0.97001 * 120.00053 * 184.54821 * 10 9 7 31 31 H 1.08993 * 109.47588 * 215.41903 * 15 6 4 32 32 H 1.09005 * 109.47051 * 335.42479 * 15 6 4 33 33 H 1.09000 * 109.47096 * 299.99982 * 16 15 6 34 34 H 1.08998 * 109.47071 * 60.00360 * 16 15 6 35 35 H 0.96703 * 116.99815 * 179.97438 * 19 17 16 36 36 H 1.08005 * 125.98569 * 179.77563 * 20 3 2 37 37 H 1.09002 * 109.46656 * 210.00042 * 23 22 2 38 38 H 1.08998 * 109.46466 * 329.99305 * 23 22 2 39 39 H 1.08993 * 109.47105 * 55.00290 * 24 23 22 40 40 H 1.09002 * 109.47381 * 60.00355 * 25 24 23 41 41 H 1.08999 * 109.46895 * 179.97438 * 25 24 23 42 42 H 1.09001 * 109.47335 * 299.99808 * 25 24 23 43 43 H 1.09002 * 109.47424 * 300.00019 * 26 24 23 44 44 H 1.09005 * 109.47286 * 60.00556 * 26 24 23 45 45 H 1.08999 * 109.47051 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1131 0.0000 4 6 1.8870 2.5201 -0.0005 5 8 0.9345 2.8605 -0.6760 6 7 2.5386 3.4289 0.7518 7 6 2.0696 4.7133 0.8337 8 1 2.7573 5.5440 0.7742 9 6 0.7090 4.9474 0.9931 10 7 -0.1394 3.9448 0.9520 11 14 0.0864 6.6873 1.2659 12 1 1.2348 7.6289 1.2713 13 1 -0.8504 7.0547 0.1738 14 1 -0.6200 6.7615 2.5700 15 6 3.7485 3.0429 1.4822 16 6 4.9821 3.4002 0.6504 17 6 6.2266 3.0026 1.4014 18 8 6.1364 2.4861 2.4899 19 8 7.4355 3.2223 0.8610 20 6 3.6596 0.6497 -0.0059 21 7 3.6343 -0.6545 -0.0007 22 7 2.3019 -1.0823 -0.0005 23 6 1.8504 -2.4760 0.0000 24 6 1.6921 -2.9613 -1.4423 25 6 1.3417 -4.4506 -1.4436 26 6 0.5726 -2.1734 -2.1255 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5143 30 1 -1.0934 4.1145 0.9971 31 1 3.7846 3.5752 2.4326 32 1 3.7340 1.9688 1.6676 33 1 4.9460 2.8678 -0.3000 34 1 4.9967 4.4742 0.4650 35 1 8.2046 2.9506 1.3805 36 1 4.5457 1.2672 -0.0108 37 1 2.5855 -3.0958 0.5134 38 1 0.8922 -2.5472 0.5147 39 1 2.6264 -2.8074 -1.9820 40 1 0.4074 -4.6046 -0.9038 41 1 1.2285 -4.7963 -2.4711 42 1 2.1393 -5.0119 -0.9568 43 1 -0.3618 -2.3274 -1.5857 44 1 0.8222 -1.1123 -2.1245 45 1 0.4595 -2.5195 -3.1529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607503802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:23 Heat of formation + Delta-G solvation = -34.718585 kcal Electronic energy + Delta-G solvation = -28783.337324 eV Core-core repulsion = 24803.604220 eV Total energy + Delta-G solvation = -3979.733104 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -40.96344 -39.99067 -37.89765 -36.39248 -35.97338 -34.40002 -32.41353 -31.98085 -30.93459 -30.01495 -27.46055 -26.89240 -26.05864 -24.90871 -23.77499 -21.36636 -21.16948 -20.55663 -19.60675 -18.51553 -17.87117 -16.88824 -16.45720 -16.01316 -15.75249 -15.41130 -15.19175 -14.79523 -14.39269 -14.03695 -13.88485 -13.59779 -13.20590 -13.07396 -12.90286 -12.59136 -12.51989 -12.48123 -12.22778 -12.09201 -11.91850 -11.54293 -11.34137 -11.30559 -11.19319 -11.12758 -11.01768 -10.92842 -10.83090 -10.58989 -10.42998 -10.31625 -10.19507 -10.07563 -8.80557 -8.79332 -7.98703 -7.63588 -7.07643 -5.84193 -3.84471 2.26971 2.45323 2.81389 3.07248 3.27749 3.32817 3.39237 3.41315 4.31374 4.53866 4.64702 4.77442 4.86537 4.99299 5.19613 5.20199 5.24900 5.31389 5.41331 5.45618 5.48650 5.52401 5.54910 5.58594 5.71262 5.75691 5.80548 5.91365 6.02825 6.03367 6.11767 6.21695 6.26862 6.30680 6.41470 6.54541 6.62739 6.74147 6.80897 7.07357 7.47584 7.66744 8.10394 8.15960 8.33963 9.16651 9.30090 9.73379 10.51753 11.05870 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009979 B = 0.005130 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.351304 B = 5457.263088 C = 7873.271852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.087 4.087 2 C 0.126 3.874 3 C -0.251 4.251 4 C 0.537 3.463 5 O -0.499 6.499 6 N -0.458 5.458 7 C -0.333 4.333 8 H 0.080 0.920 9 C 0.046 3.954 10 N -0.810 5.810 11 Si 0.911 3.089 12 H -0.272 1.272 13 H -0.285 1.285 14 H -0.285 1.285 15 C 0.117 3.883 16 C -0.137 4.137 17 C 0.480 3.520 18 O -0.515 6.515 19 O -0.522 6.522 20 C 0.058 3.942 21 N -0.313 5.313 22 N -0.368 5.368 23 C 0.137 3.863 24 C -0.112 4.112 25 C -0.143 4.143 26 C -0.156 4.156 27 H 0.080 0.920 28 H 0.055 0.945 29 H 0.103 0.897 30 H 0.257 0.743 31 H 0.074 0.926 32 H 0.074 0.926 33 H 0.103 0.897 34 H 0.113 0.887 35 H 0.403 0.597 36 H 0.179 0.821 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.078 0.922 40 H 0.057 0.943 41 H 0.060 0.940 42 H 0.057 0.943 43 H 0.058 0.942 44 H 0.065 0.935 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.529 -11.567 -2.185 13.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.003 4.003 3 C -0.266 4.266 4 C 0.324 3.676 5 O -0.373 6.373 6 N -0.180 5.180 7 C -0.461 4.461 8 H 0.098 0.902 9 C -0.164 4.164 10 N -0.445 5.445 11 Si 0.739 3.261 12 H -0.197 1.197 13 H -0.211 1.211 14 H -0.212 1.212 15 C -0.009 4.009 16 C -0.176 4.176 17 C 0.322 3.678 18 O -0.402 6.402 19 O -0.333 6.333 20 C -0.128 4.128 21 N -0.133 5.133 22 N -0.150 5.150 23 C 0.015 3.985 24 C -0.132 4.132 25 C -0.201 4.201 26 C -0.213 4.213 27 H 0.099 0.901 28 H 0.074 0.926 29 H 0.122 0.878 30 H 0.068 0.932 31 H 0.092 0.908 32 H 0.092 0.908 33 H 0.121 0.879 34 H 0.131 0.869 35 H 0.261 0.739 36 H 0.195 0.805 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.096 0.904 40 H 0.076 0.924 41 H 0.079 0.921 42 H 0.076 0.924 43 H 0.077 0.923 44 H 0.084 0.916 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.082 -12.660 -2.405 13.852 hybrid contribution -0.073 1.355 0.538 1.460 sum 5.009 -11.305 -1.867 12.505 Atomic orbital electron populations 1.20575 0.86874 1.03697 1.03377 1.21347 0.94518 0.86110 0.98292 1.20776 0.91787 0.95969 1.18068 1.16932 0.85500 0.82485 0.82678 1.90610 1.26678 1.79671 1.40354 1.43082 1.23095 1.10010 1.41835 1.19053 0.92161 0.82159 1.52699 0.90247 1.25372 0.96637 0.97753 0.96648 1.70151 1.01954 1.30343 1.42045 0.86132 0.78890 0.83466 0.77597 1.19695 1.21087 1.21157 1.21368 0.84192 1.00778 0.94530 1.22166 0.89431 1.05406 1.00611 1.23804 0.84803 0.74439 0.84749 1.90710 1.87429 1.40367 1.21745 1.84594 1.17095 1.78445 1.53204 1.24178 0.97744 0.91770 0.99081 1.76977 0.96514 1.13387 1.26425 1.48242 1.03880 1.05356 1.57515 1.21725 1.00706 0.78374 0.97655 1.21527 1.00448 0.95668 0.95518 1.21772 1.01608 0.94474 1.02271 1.22053 0.97814 1.01178 1.00302 0.90148 0.92576 0.87789 0.93210 0.90784 0.90758 0.87912 0.86903 0.73868 0.80478 0.89080 0.89208 0.90356 0.92358 0.92124 0.92440 0.92315 0.91565 0.92538 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.49 8.38 36.01 0.30 -1.19 16 2 C 0.13 2.41 5.75 -81.56 -0.47 1.94 16 3 C -0.25 -5.45 5.30 -105.07 -0.56 -6.00 16 4 C 0.54 13.67 6.47 -12.55 -0.08 13.59 16 5 O -0.50 -14.43 13.40 5.26 0.07 -14.36 16 6 N -0.46 -11.25 2.58 -116.04 -0.30 -11.55 16 7 C -0.33 -8.83 9.24 -14.98 -0.14 -8.97 16 8 H 0.08 2.00 7.84 -52.48 -0.41 1.59 16 9 C 0.05 1.25 5.08 -17.46 -0.09 1.16 16 10 N -0.81 -23.16 10.16 55.50 0.56 -22.60 16 11 Si 0.91 21.05 29.56 -169.99 -5.02 16.02 16 12 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 13 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 14 H -0.29 -6.55 7.11 56.52 0.40 -6.14 16 15 C 0.12 2.37 4.19 -4.04 -0.02 2.35 16 16 C -0.14 -2.24 5.22 -27.88 -0.15 -2.38 16 17 C 0.48 7.23 8.29 36.01 0.30 7.53 16 18 O -0.51 -9.17 16.74 -18.74 -0.31 -9.48 16 19 O -0.52 -6.16 13.42 -39.26 -0.53 -6.68 16 20 C 0.06 1.12 9.54 -16.97 -0.16 0.96 16 21 N -0.31 -5.79 12.50 30.87 0.39 -5.40 16 22 N -0.37 -6.16 3.41 -56.58 -0.19 -6.35 16 23 C 0.14 1.66 5.66 -4.04 -0.02 1.64 16 24 C -0.11 -1.20 3.13 -90.63 -0.28 -1.48 16 25 C -0.14 -1.13 9.19 37.16 0.34 -0.79 16 26 C -0.16 -1.78 7.73 37.15 0.29 -1.49 16 27 H 0.08 1.32 6.68 -51.93 -0.35 0.97 16 28 H 0.06 0.76 7.05 -51.93 -0.37 0.39 16 29 H 0.10 2.17 7.73 -51.93 -0.40 1.77 16 30 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 31 H 0.07 1.54 8.04 -51.93 -0.42 1.12 16 32 H 0.07 1.52 5.06 -51.93 -0.26 1.26 16 33 H 0.10 1.60 6.29 -51.93 -0.33 1.27 16 34 H 0.11 1.79 8.14 -51.93 -0.42 1.37 16 35 H 0.40 2.92 9.10 45.56 0.41 3.34 16 36 H 0.18 3.08 4.36 -52.48 -0.23 2.85 16 37 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 38 H 0.09 0.94 7.02 -51.93 -0.36 0.58 16 39 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 40 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 42 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 43 H 0.06 0.60 8.04 -51.93 -0.42 0.18 16 44 H 0.07 0.95 5.38 -51.93 -0.28 0.67 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 LS Contribution 364.16 15.07 5.49 5.49 Total: -1.00 -34.70 364.16 -6.09 -40.79 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -5.50 Total: 7.29 kcal Atomic # 6 Polarization: 7.58 SS G_CDS: -0.74 Total: 6.85 kcal Atomic # 7 Polarization: -46.36 SS G_CDS: 0.46 Total: -45.91 kcal Atomic # 8 Polarization: -29.75 SS G_CDS: -0.77 Total: -30.52 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 5.49 Total: 5.49 kcal Total: -34.70 -6.09 -40.79 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607503802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.069 kcal (2) G-P(sol) polarization free energy of solvation -34.699 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.788 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds