Wall clock time and date at job start Tue Mar 31 2020 14:29:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38114 * 126.30019 * 2 1 4 4 C 1.47355 * 126.42000 * 359.97438 * 3 2 1 5 5 O 1.21625 * 120.00060 * 320.14538 * 4 3 2 6 6 N 1.34777 * 120.00048 * 139.86419 * 4 3 2 7 7 C 1.36980 * 120.00365 * 185.10953 * 6 4 3 8 8 H 1.08004 * 119.99856 * 223.31394 * 7 6 4 9 9 C 1.38978 * 119.99887 * 43.31090 * 7 6 4 10 10 N 1.31409 * 119.99763 * 354.24603 * 9 7 6 11 11 Si 1.86795 * 119.99838 * 174.24343 * 9 7 6 12 12 H 1.48504 * 109.47308 * 359.97438 * 11 9 7 13 13 H 1.48500 * 109.47045 * 120.00185 * 11 9 7 14 14 H 1.48501 * 109.47016 * 239.99946 * 11 9 7 15 15 C 1.46502 * 119.99768 * 5.10890 * 6 4 3 16 16 C 1.53006 * 109.46904 * 95.41847 * 15 6 4 17 17 C 1.50701 * 109.46948 * 180.02562 * 16 15 6 18 18 O 1.20817 * 120.00374 * 0.02562 * 17 16 15 19 19 O 1.34230 * 119.99649 * 180.02562 * 17 16 15 20 20 C 1.41313 * 107.15572 * 180.24825 * 3 2 1 21 21 N 1.30445 * 108.02878 * 359.61361 * 20 3 2 22 22 N 1.34284 * 126.29672 * 180.02562 * 2 1 3 23 23 C 1.46504 * 125.75234 * 359.94564 * 22 2 1 24 24 C 1.52996 * 109.46937 * 89.99828 * 23 22 2 25 25 C 1.52999 * 109.46578 * 175.00003 * 24 23 22 26 26 C 1.52994 * 109.47146 * 294.99815 * 24 23 22 27 27 H 1.08996 * 109.47252 * 89.97546 * 1 2 3 28 28 H 1.08999 * 109.46999 * 209.97815 * 1 2 3 29 29 H 1.09007 * 109.46602 * 329.97429 * 1 2 3 30 30 H 0.97001 * 120.00053 * 184.54821 * 10 9 7 31 31 H 1.08993 * 109.47588 * 215.41903 * 15 6 4 32 32 H 1.09005 * 109.47051 * 335.42479 * 15 6 4 33 33 H 1.09000 * 109.47096 * 299.99982 * 16 15 6 34 34 H 1.08998 * 109.47071 * 60.00360 * 16 15 6 35 35 H 0.96703 * 116.99815 * 179.97438 * 19 17 16 36 36 H 1.08005 * 125.98569 * 179.77563 * 20 3 2 37 37 H 1.09002 * 109.46656 * 210.00042 * 23 22 2 38 38 H 1.08998 * 109.46466 * 329.99305 * 23 22 2 39 39 H 1.08993 * 109.47105 * 55.00290 * 24 23 22 40 40 H 1.09002 * 109.47381 * 60.00355 * 25 24 23 41 41 H 1.08999 * 109.46895 * 179.97438 * 25 24 23 42 42 H 1.09001 * 109.47335 * 299.99808 * 25 24 23 43 43 H 1.09002 * 109.47424 * 300.00019 * 26 24 23 44 44 H 1.09005 * 109.47286 * 60.00556 * 26 24 23 45 45 H 1.08999 * 109.47051 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3247 1.1131 0.0000 4 6 1.8870 2.5201 -0.0005 5 8 0.9345 2.8605 -0.6760 6 7 2.5386 3.4289 0.7518 7 6 2.0696 4.7133 0.8337 8 1 2.7573 5.5440 0.7742 9 6 0.7090 4.9474 0.9931 10 7 -0.1394 3.9448 0.9520 11 14 0.0864 6.6873 1.2659 12 1 1.2348 7.6289 1.2713 13 1 -0.8504 7.0547 0.1738 14 1 -0.6200 6.7615 2.5700 15 6 3.7485 3.0429 1.4822 16 6 4.9821 3.4002 0.6504 17 6 6.2266 3.0026 1.4014 18 8 6.1364 2.4861 2.4899 19 8 7.4355 3.2223 0.8610 20 6 3.6596 0.6497 -0.0059 21 7 3.6343 -0.6545 -0.0007 22 7 2.3019 -1.0823 -0.0005 23 6 1.8504 -2.4760 0.0000 24 6 1.6921 -2.9613 -1.4423 25 6 1.3417 -4.4506 -1.4436 26 6 0.5726 -2.1734 -2.1255 27 1 -0.3633 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5143 30 1 -1.0934 4.1145 0.9971 31 1 3.7846 3.5752 2.4326 32 1 3.7340 1.9688 1.6676 33 1 4.9460 2.8678 -0.3000 34 1 4.9967 4.4742 0.4650 35 1 8.2046 2.9506 1.3805 36 1 4.5457 1.2672 -0.0108 37 1 2.5855 -3.0958 0.5134 38 1 0.8922 -2.5472 0.5147 39 1 2.6264 -2.8074 -1.9820 40 1 0.4074 -4.6046 -0.9038 41 1 1.2285 -4.7963 -2.4711 42 1 2.1393 -5.0119 -0.9568 43 1 -0.3618 -2.3274 -1.5857 44 1 0.8222 -1.1123 -2.1245 45 1 0.4595 -2.5195 -3.1529 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607503802.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:22 Heat of formation + Delta-G solvation = -58.262541 kcal Electronic energy + Delta-G solvation = -28784.358266 eV Core-core repulsion = 24803.604220 eV Total energy + Delta-G solvation = -3980.754047 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.42388 -41.22290 -39.67302 -37.41672 -37.14232 -36.19906 -34.24573 -33.39197 -32.34343 -31.67941 -28.76781 -27.91176 -27.31112 -26.62823 -25.38818 -22.95679 -22.42226 -21.85722 -20.85271 -20.08927 -19.10046 -18.54433 -17.90358 -17.35523 -17.15440 -16.79511 -16.64751 -16.24143 -15.82754 -15.52068 -15.46449 -15.12402 -14.44060 -14.37605 -14.19282 -13.95589 -13.85370 -13.77444 -13.52652 -13.25654 -13.07103 -12.93708 -12.89608 -12.83073 -12.74324 -12.49802 -12.48761 -12.19770 -12.04381 -11.91240 -11.88754 -11.76072 -11.64274 -11.59451 -10.81167 -10.17371 -9.90931 -9.25469 -9.05282 -7.86683 -5.91650 0.79551 1.23807 1.46878 1.48187 1.50895 1.53863 1.60353 2.10342 2.43757 2.91690 3.29838 3.40336 3.63478 3.73217 3.79741 3.89010 4.01703 4.02589 4.05667 4.22793 4.30583 4.42186 4.47549 4.61034 4.65579 4.69411 4.72987 4.76197 4.79131 4.86564 4.93949 5.00452 5.03730 5.12802 5.18388 5.24948 5.36911 5.39352 5.54361 5.60835 5.65428 6.10836 6.31194 6.68255 7.05586 7.16114 7.36444 7.78451 8.59170 9.02922 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009979 B = 0.005130 C = 0.003555 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2805.351304 B = 5457.263088 C = 7873.271852 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.132 3.868 3 C -0.293 4.293 4 C 0.533 3.467 5 O -0.548 6.548 6 N -0.470 5.470 7 C -0.349 4.349 8 H 0.089 0.911 9 C -0.008 4.008 10 N -0.843 5.843 11 Si 0.978 3.022 12 H -0.256 1.256 13 H -0.292 1.292 14 H -0.283 1.283 15 C 0.123 3.877 16 C -0.130 4.130 17 C 0.496 3.504 18 O -0.544 6.544 19 O -0.508 6.508 20 C 0.061 3.939 21 N -0.317 5.317 22 N -0.354 5.354 23 C 0.123 3.877 24 C -0.104 4.104 25 C -0.136 4.136 26 C -0.156 4.156 27 H 0.086 0.914 28 H 0.096 0.904 29 H 0.062 0.938 30 H 0.252 0.748 31 H 0.064 0.936 32 H 0.071 0.929 33 H 0.112 0.888 34 H 0.120 0.880 35 H 0.428 0.572 36 H 0.191 0.809 37 H 0.107 0.893 38 H 0.113 0.887 39 H 0.060 0.940 40 H 0.071 0.929 41 H 0.067 0.933 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.031 0.969 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.598 -13.107 -2.086 14.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C 0.000 4.000 3 C -0.307 4.307 4 C 0.322 3.678 5 O -0.425 6.425 6 N -0.192 5.192 7 C -0.477 4.477 8 H 0.106 0.894 9 C -0.215 4.215 10 N -0.479 5.479 11 Si 0.803 3.197 12 H -0.180 1.180 13 H -0.219 1.219 14 H -0.209 1.209 15 C -0.002 4.002 16 C -0.168 4.168 17 C 0.339 3.661 18 O -0.435 6.435 19 O -0.322 6.322 20 C -0.125 4.125 21 N -0.138 5.138 22 N -0.135 5.135 23 C 0.004 3.996 24 C -0.124 4.124 25 C -0.194 4.194 26 C -0.213 4.213 27 H 0.104 0.896 28 H 0.115 0.885 29 H 0.081 0.919 30 H 0.061 0.939 31 H 0.082 0.918 32 H 0.089 0.911 33 H 0.130 0.870 34 H 0.138 0.862 35 H 0.290 0.710 36 H 0.207 0.793 37 H 0.125 0.875 38 H 0.131 0.869 39 H 0.078 0.922 40 H 0.090 0.910 41 H 0.086 0.914 42 H 0.085 0.915 43 H 0.092 0.908 44 H 0.050 0.950 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 6.238 -14.225 -2.291 15.700 hybrid contribution -0.319 1.724 0.472 1.816 sum 5.919 -12.500 -1.820 13.950 Atomic orbital electron populations 1.20492 0.85799 1.03541 1.03694 1.21514 0.95267 0.86311 0.96865 1.20597 0.93611 0.94825 1.21700 1.17420 0.84685 0.83968 0.81768 1.90556 1.28704 1.80868 1.42406 1.43276 1.24349 1.09582 1.41980 1.19441 0.92569 0.83416 1.52280 0.89352 1.26247 0.97067 1.01577 0.96570 1.70335 1.01709 1.32256 1.43614 0.85113 0.78403 0.79202 0.76969 1.17954 1.21865 1.20877 1.21305 0.84172 1.00335 0.94387 1.21878 0.88758 1.05947 1.00243 1.23247 0.85353 0.73675 0.83808 1.90716 1.87971 1.41857 1.22923 1.84513 1.16840 1.77771 1.53091 1.24260 0.97220 0.92078 0.98905 1.76925 0.97606 1.12843 1.26389 1.48569 1.02905 1.06549 1.55496 1.22267 1.02247 0.75859 0.99243 1.21461 0.99349 0.97591 0.93978 1.21729 1.02617 0.91904 1.03164 1.22043 0.98754 0.99040 1.01457 0.89566 0.88538 0.91916 0.93855 0.91784 0.91119 0.87045 0.86244 0.71039 0.79267 0.87481 0.86903 0.92165 0.90951 0.91444 0.91493 0.90781 0.95022 0.91556 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.66 8.38 71.24 0.60 -2.07 16 2 C 0.13 5.05 5.75 42.15 0.24 5.29 16 3 C -0.29 -13.00 5.30 -20.15 -0.11 -13.11 16 4 C 0.53 28.27 6.47 86.64 0.56 28.83 16 5 O -0.55 -33.32 13.40 -4.11 -0.06 -33.37 16 6 N -0.47 -23.82 2.58 -639.29 -1.65 -25.47 16 7 C -0.35 -18.96 9.24 84.07 0.78 -18.18 16 8 H 0.09 4.49 7.84 -2.91 -0.02 4.47 16 9 C -0.01 -0.46 5.08 84.93 0.43 -0.03 16 10 N -0.84 -50.35 10.16 21.67 0.22 -50.13 16 11 Si 0.98 44.21 29.56 68.60 2.03 46.23 16 12 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 13 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 C 0.12 5.05 4.19 86.38 0.36 5.41 16 16 C -0.13 -4.15 5.22 29.85 0.16 -3.99 16 17 C 0.50 14.16 8.29 71.24 0.59 14.75 16 18 O -0.54 -18.79 16.74 21.99 0.37 -18.42 16 19 O -0.51 -10.58 13.42 -51.42 -0.69 -11.27 16 20 C 0.06 2.34 9.54 85.66 0.82 3.16 16 21 N -0.32 -11.45 12.50 -56.26 -0.70 -12.16 16 22 N -0.35 -11.44 3.41 -332.92 -1.14 -12.58 16 23 C 0.12 2.66 5.66 86.38 0.49 3.15 16 24 C -0.10 -1.99 3.13 -10.80 -0.03 -2.02 16 25 C -0.14 -1.68 9.19 71.98 0.66 -1.02 16 26 C -0.16 -3.28 7.73 71.98 0.56 -2.73 16 27 H 0.09 2.87 6.68 -2.39 -0.02 2.85 16 28 H 0.10 2.45 7.05 -2.39 -0.02 2.43 16 29 H 0.06 2.74 7.73 -2.38 -0.02 2.73 16 30 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 31 H 0.06 2.72 8.04 -2.39 -0.02 2.70 16 32 H 0.07 2.95 5.06 -2.38 -0.01 2.94 16 33 H 0.11 3.39 6.29 -2.39 -0.02 3.38 16 34 H 0.12 3.69 8.14 -2.39 -0.02 3.67 16 35 H 0.43 4.82 9.10 -74.06 -0.67 4.14 16 36 H 0.19 6.52 4.36 -2.91 -0.01 6.51 16 37 H 0.11 2.03 8.14 -2.39 -0.02 2.01 16 38 H 0.11 1.95 7.02 -2.39 -0.02 1.94 16 39 H 0.06 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 41 H 0.07 0.78 8.14 -2.39 -0.02 0.76 16 42 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 43 H 0.07 1.31 8.04 -2.39 -0.02 1.29 16 44 H 0.03 0.89 5.38 -2.38 -0.01 0.87 16 45 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 Total: -1.00 -78.74 364.16 4.84 -73.90 By element: Atomic # 1 Polarization: 25.47 SS G_CDS: 0.36 Total: 25.83 kcal Atomic # 6 Polarization: 11.33 SS G_CDS: 6.10 Total: 17.43 kcal Atomic # 7 Polarization: -97.06 SS G_CDS: -3.27 Total: -100.34 kcal Atomic # 8 Polarization: -62.69 SS G_CDS: -0.38 Total: -63.07 kcal Atomic # 14 Polarization: 44.21 SS G_CDS: 2.03 Total: 46.23 kcal Total: -78.74 4.84 -73.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607503802.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.641 kcal (2) G-P(sol) polarization free energy of solvation -78.740 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.100 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.837 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.263 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds