Wall clock time and date at job start Tue Mar 31 2020 14:32:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38042 * 126.28757 * 2 1 4 4 C 1.47424 * 126.41843 * 359.97438 * 3 2 1 5 5 O 1.21612 * 119.99766 * 306.17580 * 4 3 2 6 6 N 1.34776 * 120.00355 * 126.18545 * 4 3 2 7 7 C 1.46502 * 119.99737 * 184.09019 * 6 4 3 8 8 C 1.52998 * 109.47082 * 269.99285 * 7 6 4 9 9 C 1.50696 * 109.47573 * 180.02562 * 8 7 6 10 10 O 1.20831 * 119.99913 * 0.02562 * 9 8 7 11 11 O 1.34230 * 120.00665 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00027 * 4.08580 * 6 4 3 13 13 C 1.52992 * 109.46984 * 114.81790 * 12 6 4 14 14 C 1.52997 * 109.46887 * 234.81533 * 12 6 4 15 15 C 1.41293 * 107.16818 * 180.24892 * 3 2 1 16 16 N 1.30450 * 108.02030 * 359.61512 * 15 3 2 17 17 N 1.34251 * 126.29319 * 180.02562 * 2 1 3 18 18 C 1.46509 * 125.75345 * 359.95904 * 17 2 1 19 19 C 1.50697 * 109.47287 * 89.99813 * 18 17 2 20 20 H 1.08006 * 119.99950 * 0.02562 * 19 18 17 21 21 C 1.37869 * 120.00397 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99659 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00638 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47183 * 59.99533 * 23 21 19 25 25 H 1.48492 * 109.47509 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46866 * 300.00307 * 23 21 19 27 27 H 1.08995 * 109.46947 * 89.99840 * 1 2 3 28 28 H 1.08998 * 109.47103 * 209.99670 * 1 2 3 29 29 H 1.08999 * 109.47162 * 329.99523 * 1 2 3 30 30 H 1.08996 * 109.47294 * 29.99448 * 7 6 4 31 31 H 1.09006 * 109.46942 * 149.99922 * 7 6 4 32 32 H 1.09000 * 109.47786 * 300.00614 * 8 7 6 33 33 H 1.09005 * 109.47205 * 60.00306 * 8 7 6 34 34 H 0.96691 * 117.00421 * 180.02562 * 11 9 8 35 35 H 1.08997 * 109.46509 * 354.81536 * 12 6 4 36 36 H 1.09004 * 109.46869 * 180.02562 * 13 12 6 37 37 H 1.09007 * 109.47269 * 299.99450 * 13 12 6 38 38 H 1.08992 * 109.47791 * 59.99991 * 13 12 6 39 39 H 1.09002 * 109.47652 * 300.00100 * 14 12 6 40 40 H 1.09001 * 109.47123 * 60.00020 * 14 12 6 41 41 H 1.09004 * 109.46853 * 179.97438 * 14 12 6 42 42 H 1.08001 * 125.99009 * 179.74365 * 15 3 2 43 43 H 1.08995 * 109.46713 * 210.00068 * 18 17 2 44 44 H 1.08998 * 109.46855 * 329.99557 * 18 17 2 45 45 H 0.97002 * 119.99782 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 1.1118 2.9158 -0.8511 6 7 2.3430 3.3689 0.9414 7 6 1.8394 4.7435 0.9955 8 6 2.7178 5.6431 0.1237 9 6 2.2002 7.0573 0.1798 10 8 1.2287 7.3190 0.8488 11 8 2.8190 8.0265 -0.5127 12 6 3.3435 2.9166 1.9113 13 6 4.6466 3.6893 1.6977 14 6 2.8285 3.1676 3.3299 15 6 3.6590 0.6499 -0.0059 16 7 3.6340 -0.6543 -0.0008 17 7 2.3017 -1.0821 -0.0005 18 6 1.8501 -2.4758 -0.0003 19 6 1.6944 -2.9537 -1.4210 20 1 1.9106 -2.2861 -2.2420 21 6 1.2759 -4.2430 -1.6727 22 7 1.0121 -5.0557 -0.6729 23 14 1.0836 -4.8356 -3.4337 24 1 2.3895 -4.7391 -4.1339 25 1 0.6257 -6.2482 -3.4335 26 1 0.0831 -3.9905 -4.1338 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 0.8140 4.7696 0.6269 31 1 1.8644 5.0994 2.0255 32 1 3.7433 5.6171 0.4923 33 1 2.6928 5.2873 -0.9063 34 1 2.4506 8.9180 -0.4452 35 1 3.5264 1.8508 1.7743 36 1 5.3912 3.3524 2.4190 37 1 5.0136 3.5105 0.6869 38 1 4.4638 4.7550 1.8346 39 1 2.6455 4.2333 3.4669 40 1 1.9001 2.6171 3.4821 41 1 3.5728 2.8306 4.0516 42 1 4.5449 1.2677 -0.0113 43 1 2.5850 -3.0957 0.5131 44 1 0.8918 -2.5471 0.5142 45 1 0.7180 -5.9630 -0.8500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607504535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:33 Heat of formation + Delta-G solvation = -62.066743 kcal Electronic energy + Delta-G solvation = -27931.082721 eV Core-core repulsion = 23950.163712 eV Total energy + Delta-G solvation = -3980.919010 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.02276 -40.51128 -39.30311 -36.71791 -36.36357 -33.92583 -32.92708 -32.13848 -31.37287 -30.61832 -27.77651 -27.27820 -26.71985 -25.10781 -23.40100 -22.43208 -21.47445 -20.77973 -19.60863 -18.60211 -18.13137 -17.34269 -16.87936 -16.79209 -16.19111 -15.73042 -15.41351 -14.88722 -14.62867 -14.32473 -14.13690 -14.09333 -13.60468 -13.41711 -13.25185 -13.15904 -12.73387 -12.56413 -12.52015 -12.28746 -12.15963 -12.06211 -11.81584 -11.72668 -11.52711 -11.42904 -11.19060 -11.13966 -10.96904 -10.88178 -10.78321 -10.36358 -10.27956 -9.93222 -9.49113 -8.77235 -8.70554 -8.58728 -7.86851 -6.33637 -4.41398 1.93852 2.27704 2.59210 2.80503 3.10286 3.20900 3.24611 3.27424 3.37380 3.53988 4.24819 4.53599 4.61228 4.74365 4.91356 4.94123 5.01805 5.06395 5.12889 5.21236 5.23268 5.39300 5.42054 5.51752 5.60232 5.63519 5.66650 5.76712 5.84774 5.94890 5.98723 5.99979 6.09306 6.21277 6.32565 6.44712 6.58443 6.78371 6.89214 7.14901 7.49700 7.56334 7.60359 7.77011 7.78783 8.36817 8.44858 8.64356 9.25723 10.74421 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021269 B = 0.002868 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.178994 B = 9762.076374 C =10268.610794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 C 0.148 3.852 3 C -0.325 4.325 4 C 0.608 3.392 5 O -0.540 6.540 6 N -0.607 5.607 7 C 0.129 3.871 8 C -0.138 4.138 9 C 0.485 3.515 10 O -0.517 6.517 11 O -0.518 6.518 12 C 0.121 3.879 13 C -0.168 4.168 14 C -0.163 4.163 15 C 0.055 3.945 16 N -0.293 5.293 17 N -0.312 5.312 18 C 0.253 3.747 19 C -0.541 4.541 20 H 0.065 0.935 21 C 0.068 3.932 22 N -0.891 5.891 23 Si 0.908 3.092 24 H -0.274 1.274 25 H -0.284 1.284 26 H -0.273 1.273 27 H 0.087 0.913 28 H 0.077 0.923 29 H 0.073 0.927 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.111 0.889 33 H 0.113 0.887 34 H 0.409 0.591 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.058 0.942 39 H 0.057 0.943 40 H 0.061 0.939 41 H 0.067 0.933 42 H 0.175 0.825 43 H 0.057 0.943 44 H 0.056 0.944 45 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.734 20.370 6.987 22.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.012 3.988 3 C -0.341 4.341 4 C 0.398 3.602 5 O -0.417 6.417 6 N -0.340 5.340 7 C 0.006 3.994 8 C -0.177 4.177 9 C 0.327 3.673 10 O -0.405 6.405 11 O -0.330 6.330 12 C 0.018 3.982 13 C -0.226 4.226 14 C -0.221 4.221 15 C -0.131 4.131 16 N -0.114 5.114 17 N -0.089 5.089 18 C 0.136 3.864 19 C -0.579 4.579 20 H 0.083 0.917 21 C -0.136 4.136 22 N -0.528 5.528 23 Si 0.734 3.266 24 H -0.199 1.199 25 H -0.209 1.209 26 H -0.198 1.198 27 H 0.105 0.895 28 H 0.095 0.905 29 H 0.092 0.908 30 H 0.110 0.890 31 H 0.105 0.895 32 H 0.129 0.871 33 H 0.131 0.869 34 H 0.268 0.732 35 H 0.128 0.872 36 H 0.088 0.912 37 H 0.081 0.919 38 H 0.077 0.923 39 H 0.076 0.924 40 H 0.081 0.919 41 H 0.086 0.914 42 H 0.192 0.808 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.830 18.770 6.746 20.522 hybrid contribution -0.619 0.951 -0.917 1.458 sum 4.211 19.721 5.829 20.991 Atomic orbital electron populations 1.20422 0.87232 1.02896 1.04055 1.21272 0.94591 0.86539 0.96372 1.19553 0.93565 0.92183 1.28775 1.17563 0.78912 0.84282 0.79492 1.90745 1.35944 1.78178 1.36828 1.47924 1.43237 1.10734 1.32117 1.21088 0.98120 0.80352 0.99862 1.22029 1.02715 0.87461 1.05484 1.23444 0.80615 0.88101 0.75131 1.90735 1.26418 1.83574 1.39795 1.84550 1.59070 1.22046 1.67358 1.21367 0.87339 1.01302 0.88189 1.22346 0.97154 1.00444 1.02696 1.22158 1.02120 1.02009 0.95804 1.23651 0.95946 0.92392 1.01148 1.77140 0.98583 1.12073 1.23555 1.49287 1.02356 1.08159 1.49124 1.19825 0.96315 0.70929 0.99375 1.21228 1.47428 0.98159 0.91072 0.91668 1.24913 0.94421 0.95983 0.98287 1.69905 1.44507 1.07224 1.31174 0.86382 0.78931 0.77715 0.83529 1.19887 1.20892 1.19819 0.89460 0.90455 0.90794 0.88973 0.89512 0.87072 0.86923 0.73211 0.87206 0.91179 0.91891 0.92324 0.92377 0.91947 0.91357 0.80773 0.92541 0.92668 0.92073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.51 9.93 36.01 0.36 -1.15 16 2 C 0.15 2.91 7.01 -81.60 -0.57 2.34 16 3 C -0.33 -5.74 4.96 -105.07 -0.52 -6.26 16 4 C 0.61 9.78 7.15 -12.52 -0.09 9.69 16 5 O -0.54 -10.31 16.73 5.27 0.09 -10.22 16 6 N -0.61 -7.29 2.40 -167.37 -0.40 -7.69 16 7 C 0.13 1.40 4.22 -4.04 -0.02 1.38 16 8 C -0.14 -1.27 5.88 -27.89 -0.16 -1.43 16 9 C 0.48 4.69 8.33 36.00 0.30 4.99 16 10 O -0.52 -6.45 16.74 -18.75 -0.31 -6.77 16 11 O -0.52 -3.83 13.42 -39.26 -0.53 -4.36 16 12 C 0.12 1.20 2.87 -67.94 -0.19 1.00 16 13 C -0.17 -1.25 8.46 37.15 0.31 -0.93 16 14 C -0.16 -1.39 9.06 37.16 0.34 -1.05 16 15 C 0.05 0.93 9.73 -16.98 -0.17 0.76 16 16 N -0.29 -6.12 12.50 30.86 0.39 -5.74 16 17 N -0.31 -6.85 3.56 -57.77 -0.21 -7.05 16 18 C 0.25 6.17 5.97 -5.19 -0.03 6.13 16 19 C -0.54 -14.49 9.39 -34.44 -0.32 -14.81 16 20 H 0.07 1.81 7.81 -52.48 -0.41 1.40 16 21 C 0.07 1.81 5.46 -17.82 -0.10 1.71 16 22 N -0.89 -24.44 13.29 55.43 0.74 -23.71 16 23 Si 0.91 20.84 29.54 -169.99 -5.02 15.82 16 24 H -0.27 -6.30 7.11 56.52 0.40 -5.90 16 25 H -0.28 -6.37 7.11 56.52 0.40 -5.96 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 28 H 0.08 1.29 7.05 -51.93 -0.37 0.92 16 29 H 0.07 1.13 7.96 -51.93 -0.41 0.72 16 30 H 0.09 1.20 7.44 -51.93 -0.39 0.82 16 31 H 0.09 0.82 6.13 -51.93 -0.32 0.50 16 32 H 0.11 0.80 5.42 -51.93 -0.28 0.52 16 33 H 0.11 1.16 8.14 -51.93 -0.42 0.74 16 34 H 0.41 1.31 9.10 45.56 0.41 1.72 16 35 H 0.11 1.28 4.64 -51.93 -0.24 1.04 16 36 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.48 8.12 -51.92 -0.42 0.06 16 38 H 0.06 0.38 6.00 -51.93 -0.31 0.07 16 39 H 0.06 0.44 6.52 -51.93 -0.34 0.11 16 40 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 42 H 0.18 2.27 7.89 -52.49 -0.41 1.86 16 43 H 0.06 1.46 8.14 -51.93 -0.42 1.04 16 44 H 0.06 1.33 7.02 -51.93 -0.36 0.97 16 45 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 LS Contribution 376.15 15.07 5.67 5.67 Total: -1.00 -32.83 376.15 -5.98 -38.81 By element: Atomic # 1 Polarization: 8.39 SS G_CDS: -5.52 Total: 2.87 kcal Atomic # 6 Polarization: 3.24 SS G_CDS: -0.87 Total: 2.37 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.51 Total: -44.19 kcal Atomic # 8 Polarization: -20.59 SS G_CDS: -0.75 Total: -21.35 kcal Atomic # 14 Polarization: 20.84 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -32.83 -5.98 -38.81 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607504535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.256 kcal (2) G-P(sol) polarization free energy of solvation -32.830 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.086 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds