Wall clock time and date at job start Tue Mar 31 2020 14:32:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38042 * 126.28757 * 2 1 4 4 C 1.47424 * 126.41843 * 359.97438 * 3 2 1 5 5 O 1.21612 * 119.99766 * 306.17580 * 4 3 2 6 6 N 1.34776 * 120.00355 * 126.18545 * 4 3 2 7 7 C 1.46502 * 119.99737 * 184.09019 * 6 4 3 8 8 C 1.52998 * 109.47082 * 269.99285 * 7 6 4 9 9 C 1.50696 * 109.47573 * 180.02562 * 8 7 6 10 10 O 1.20831 * 119.99913 * 0.02562 * 9 8 7 11 11 O 1.34230 * 120.00665 * 179.97438 * 9 8 7 12 12 C 1.46501 * 120.00027 * 4.08580 * 6 4 3 13 13 C 1.52992 * 109.46984 * 114.81790 * 12 6 4 14 14 C 1.52997 * 109.46887 * 234.81533 * 12 6 4 15 15 C 1.41293 * 107.16818 * 180.24892 * 3 2 1 16 16 N 1.30450 * 108.02030 * 359.61512 * 15 3 2 17 17 N 1.34251 * 126.29319 * 180.02562 * 2 1 3 18 18 C 1.46509 * 125.75345 * 359.95904 * 17 2 1 19 19 C 1.50697 * 109.47287 * 89.99813 * 18 17 2 20 20 H 1.08006 * 119.99950 * 0.02562 * 19 18 17 21 21 C 1.37869 * 120.00397 * 180.02562 * 19 18 17 22 22 N 1.31520 * 119.99659 * 0.02562 * 21 19 18 23 23 Si 1.86795 * 120.00638 * 180.02562 * 21 19 18 24 24 H 1.48498 * 109.47183 * 59.99533 * 23 21 19 25 25 H 1.48492 * 109.47509 * 179.97438 * 23 21 19 26 26 H 1.48501 * 109.46866 * 300.00307 * 23 21 19 27 27 H 1.08995 * 109.46947 * 89.99840 * 1 2 3 28 28 H 1.08998 * 109.47103 * 209.99670 * 1 2 3 29 29 H 1.08999 * 109.47162 * 329.99523 * 1 2 3 30 30 H 1.08996 * 109.47294 * 29.99448 * 7 6 4 31 31 H 1.09006 * 109.46942 * 149.99922 * 7 6 4 32 32 H 1.09000 * 109.47786 * 300.00614 * 8 7 6 33 33 H 1.09005 * 109.47205 * 60.00306 * 8 7 6 34 34 H 0.96691 * 117.00421 * 180.02562 * 11 9 8 35 35 H 1.08997 * 109.46509 * 354.81536 * 12 6 4 36 36 H 1.09004 * 109.46869 * 180.02562 * 13 12 6 37 37 H 1.09007 * 109.47269 * 299.99450 * 13 12 6 38 38 H 1.08992 * 109.47791 * 59.99991 * 13 12 6 39 39 H 1.09002 * 109.47652 * 300.00100 * 14 12 6 40 40 H 1.09001 * 109.47123 * 60.00020 * 14 12 6 41 41 H 1.09004 * 109.46853 * 179.97438 * 14 12 6 42 42 H 1.08001 * 125.99009 * 179.74365 * 15 3 2 43 43 H 1.08995 * 109.46713 * 210.00068 * 18 17 2 44 44 H 1.08998 * 109.46855 * 329.99557 * 18 17 2 45 45 H 0.97002 * 119.99782 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3240 1.1127 0.0000 4 6 1.8858 2.5203 -0.0005 5 8 1.1118 2.9158 -0.8511 6 7 2.3430 3.3689 0.9414 7 6 1.8394 4.7435 0.9955 8 6 2.7178 5.6431 0.1237 9 6 2.2002 7.0573 0.1798 10 8 1.2287 7.3190 0.8488 11 8 2.8190 8.0265 -0.5127 12 6 3.3435 2.9166 1.9113 13 6 4.6466 3.6893 1.6977 14 6 2.8285 3.1676 3.3299 15 6 3.6590 0.6499 -0.0059 16 7 3.6340 -0.6543 -0.0008 17 7 2.3017 -1.0821 -0.0005 18 6 1.8501 -2.4758 -0.0003 19 6 1.6944 -2.9537 -1.4210 20 1 1.9106 -2.2861 -2.2420 21 6 1.2759 -4.2430 -1.6727 22 7 1.0121 -5.0557 -0.6729 23 14 1.0836 -4.8356 -3.4337 24 1 2.3895 -4.7391 -4.1339 25 1 0.6257 -6.2482 -3.4335 26 1 0.0831 -3.9905 -4.1338 27 1 -0.3633 0.0000 -1.0276 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3633 0.8899 0.5139 30 1 0.8140 4.7696 0.6269 31 1 1.8644 5.0994 2.0255 32 1 3.7433 5.6171 0.4923 33 1 2.6928 5.2873 -0.9063 34 1 2.4506 8.9180 -0.4452 35 1 3.5264 1.8508 1.7743 36 1 5.3912 3.3524 2.4190 37 1 5.0136 3.5105 0.6869 38 1 4.4638 4.7550 1.8346 39 1 2.6455 4.2333 3.4669 40 1 1.9001 2.6171 3.4821 41 1 3.5728 2.8306 4.0516 42 1 4.5449 1.2677 -0.0113 43 1 2.5850 -3.0957 0.5131 44 1 0.8918 -2.5471 0.5142 45 1 0.7180 -5.9630 -0.8500 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607504535.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:32:32 Heat of formation + Delta-G solvation = -83.758684 kcal Electronic energy + Delta-G solvation = -27932.023354 eV Core-core repulsion = 23950.163712 eV Total energy + Delta-G solvation = -3981.859643 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -42.42306 -41.35892 -40.44897 -37.77219 -37.10436 -35.79997 -33.97098 -33.66443 -32.79901 -31.68771 -29.29458 -28.29230 -28.02305 -26.18048 -25.17865 -23.57088 -22.27799 -21.96664 -20.97580 -19.70620 -18.97541 -18.83341 -18.54095 -17.68103 -17.23733 -16.91771 -16.66419 -16.35081 -16.07379 -15.72258 -15.33194 -15.04728 -14.69597 -14.45660 -14.32478 -14.23072 -14.06208 -13.84812 -13.69326 -13.51605 -13.36249 -13.18098 -13.09249 -12.96415 -12.77255 -12.69634 -12.54034 -12.28890 -12.11736 -11.97555 -11.93534 -11.77072 -11.72709 -11.54569 -10.84662 -10.75330 -10.21559 -9.80590 -9.36532 -8.37283 -6.53341 0.81690 1.19702 1.34808 1.38424 1.39316 1.47620 1.63223 1.86022 2.03041 2.32804 2.47764 2.94770 3.61653 3.72735 3.76881 3.88395 3.99630 4.12832 4.17152 4.24576 4.34996 4.43778 4.49984 4.52131 4.56644 4.73534 4.76202 4.80432 4.85018 4.89574 4.95034 4.97701 5.05962 5.12907 5.17988 5.32320 5.45008 5.49847 5.59282 5.64662 5.71421 5.76501 6.07461 6.38902 6.55845 6.86169 6.99146 7.17693 7.21614 8.69987 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.021269 B = 0.002868 C = 0.002726 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.178994 B = 9762.076374 C =10268.610794 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.130 3.870 3 C -0.320 4.320 4 C 0.609 3.391 5 O -0.576 6.576 6 N -0.592 5.592 7 C 0.130 3.870 8 C -0.132 4.132 9 C 0.493 3.507 10 O -0.550 6.550 11 O -0.513 6.513 12 C 0.116 3.884 13 C -0.165 4.165 14 C -0.160 4.160 15 C 0.077 3.923 16 N -0.331 5.331 17 N -0.336 5.336 18 C 0.270 3.730 19 C -0.557 4.557 20 H 0.049 0.951 21 C 0.026 3.974 22 N -0.916 5.916 23 Si 0.968 3.032 24 H -0.274 1.274 25 H -0.272 1.272 26 H -0.268 1.268 27 H 0.080 0.920 28 H 0.077 0.923 29 H 0.091 0.909 30 H 0.066 0.934 31 H 0.106 0.894 32 H 0.138 0.862 33 H 0.103 0.897 34 H 0.428 0.572 35 H 0.092 0.908 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.044 0.956 41 H 0.084 0.916 42 H 0.217 0.783 43 H 0.033 0.967 44 H 0.052 0.948 45 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.045 22.379 7.131 24.253 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.004 4.004 3 C -0.335 4.335 4 C 0.398 3.602 5 O -0.456 6.456 6 N -0.323 5.323 7 C 0.007 3.993 8 C -0.170 4.170 9 C 0.336 3.664 10 O -0.441 6.441 11 O -0.327 6.327 12 C 0.013 3.987 13 C -0.223 4.223 14 C -0.218 4.218 15 C -0.109 4.109 16 N -0.151 5.151 17 N -0.114 5.114 18 C 0.151 3.849 19 C -0.595 4.595 20 H 0.067 0.933 21 C -0.176 4.176 22 N -0.553 5.553 23 Si 0.792 3.208 24 H -0.199 1.199 25 H -0.197 1.197 26 H -0.193 1.193 27 H 0.098 0.902 28 H 0.095 0.905 29 H 0.110 0.890 30 H 0.085 0.915 31 H 0.124 0.876 32 H 0.155 0.845 33 H 0.121 0.879 34 H 0.290 0.710 35 H 0.110 0.890 36 H 0.106 0.894 37 H 0.082 0.918 38 H 0.091 0.909 39 H 0.090 0.910 40 H 0.064 0.936 41 H 0.103 0.897 42 H 0.233 0.767 43 H 0.051 0.949 44 H 0.069 0.931 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 6.167 20.829 6.920 22.798 hybrid contribution -0.964 0.486 -0.896 1.403 sum 5.203 21.315 6.024 22.753 Atomic orbital electron populations 1.20432 0.86164 1.03734 1.03811 1.21759 0.95620 0.86614 0.96441 1.19799 0.93613 0.92733 1.27364 1.17358 0.78832 0.83996 0.80025 1.90734 1.37641 1.78580 1.38620 1.47889 1.42716 1.10730 1.30994 1.21133 0.97203 0.79754 1.01234 1.21927 1.03571 0.86946 1.04573 1.23397 0.79929 0.88525 0.74534 1.90734 1.27801 1.84139 1.41384 1.84502 1.58674 1.23060 1.66431 1.21570 0.88106 1.00716 0.88288 1.22330 0.95675 1.00920 1.03346 1.22143 1.01795 1.02686 0.95154 1.24278 0.97073 0.91394 0.98126 1.77089 0.98353 1.14053 1.25625 1.49002 1.03211 1.07602 1.51554 1.19329 0.95322 0.72385 0.97863 1.21382 1.47910 0.98464 0.91767 0.93264 1.25676 0.93855 0.95946 1.02080 1.69980 1.44814 1.07602 1.32947 0.85456 0.78787 0.77704 0.78894 1.19915 1.19663 1.19324 0.90157 0.90462 0.89036 0.91512 0.87637 0.84452 0.87865 0.70975 0.89043 0.89439 0.91799 0.90851 0.91048 0.93641 0.89668 0.76690 0.94940 0.93066 0.91653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.94 9.93 71.24 0.71 -2.23 16 2 C 0.13 5.20 7.01 42.14 0.30 5.50 16 3 C -0.32 -11.16 4.96 -20.15 -0.10 -11.26 16 4 C 0.61 19.16 7.15 86.66 0.62 19.78 16 5 O -0.58 -21.97 16.73 -4.07 -0.07 -22.04 16 6 N -0.59 -13.22 2.40 -801.70 -1.92 -15.14 16 7 C 0.13 2.58 4.22 86.38 0.36 2.95 16 8 C -0.13 -2.11 5.88 29.85 0.18 -1.94 16 9 C 0.49 8.50 8.33 71.23 0.59 9.09 16 10 O -0.55 -12.94 16.74 21.95 0.37 -12.58 16 11 O -0.51 -6.22 13.42 -51.42 -0.69 -6.91 16 12 C 0.12 1.99 2.87 44.99 0.13 2.12 16 13 C -0.17 -1.80 8.46 71.98 0.61 -1.19 16 14 C -0.16 -2.32 9.06 71.98 0.65 -1.67 16 15 C 0.08 2.55 9.73 85.65 0.83 3.38 16 16 N -0.33 -13.94 12.50 -56.27 -0.70 -14.64 16 17 N -0.34 -15.19 3.56 -336.69 -1.20 -16.39 16 18 C 0.27 13.71 5.97 85.63 0.51 14.23 16 19 C -0.56 -30.73 9.39 25.60 0.24 -30.49 16 20 H 0.05 2.81 7.81 -2.91 -0.02 2.79 16 21 C 0.03 1.40 5.46 84.65 0.46 1.86 16 22 N -0.92 -50.94 13.29 21.45 0.28 -50.66 16 23 Si 0.97 42.87 29.54 68.60 2.03 44.90 16 24 H -0.27 -12.08 7.11 99.48 0.71 -11.37 16 25 H -0.27 -11.46 7.11 99.48 0.71 -10.75 16 26 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 27 H 0.08 2.93 8.14 -2.39 -0.02 2.91 16 28 H 0.08 2.67 7.05 -2.39 -0.02 2.66 16 29 H 0.09 2.83 7.96 -2.39 -0.02 2.81 16 30 H 0.07 1.72 7.44 -2.39 -0.02 1.70 16 31 H 0.11 1.72 6.13 -2.38 -0.01 1.71 16 32 H 0.14 1.45 5.42 -2.39 -0.01 1.44 16 33 H 0.10 1.94 8.14 -2.38 -0.02 1.92 16 34 H 0.43 1.63 9.10 -74.06 -0.67 0.95 16 35 H 0.09 1.95 4.64 -2.39 -0.01 1.94 16 36 H 0.09 0.72 8.14 -2.38 -0.02 0.70 16 37 H 0.06 0.72 8.12 -2.38 -0.02 0.70 16 38 H 0.07 0.61 6.00 -2.39 -0.01 0.59 16 39 H 0.07 0.86 6.52 -2.39 -0.02 0.84 16 40 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.08 0.98 8.14 -2.38 -0.02 0.96 16 42 H 0.22 5.01 7.89 -2.91 -0.02 4.99 16 43 H 0.03 1.77 8.14 -2.39 -0.02 1.75 16 44 H 0.05 2.59 7.02 -2.39 -0.02 2.58 16 45 H 0.27 14.31 8.31 -92.71 -0.77 13.54 16 Total: -1.00 -72.63 376.15 4.54 -68.09 By element: Atomic # 1 Polarization: 14.88 SS G_CDS: 0.36 Total: 15.24 kcal Atomic # 6 Polarization: 4.04 SS G_CDS: 6.09 Total: 10.13 kcal Atomic # 7 Polarization: -93.29 SS G_CDS: -3.54 Total: -96.83 kcal Atomic # 8 Polarization: -41.13 SS G_CDS: -0.39 Total: -41.53 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Total: -72.63 4.54 -68.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607504535.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.669 kcal (2) G-P(sol) polarization free energy of solvation -72.632 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.301 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.759 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds