Wall clock time and date at job start Tue Mar 31 2020 14:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39872 * 125.89600 * 2 1 4 4 C 1.35318 * 107.91621 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.12357 * 180.02562 * 4 3 2 6 6 N 1.34946 * 107.74802 * 0.02562 * 4 3 2 7 7 C 1.46497 * 126.03498 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.47149 * 0.02562 * 7 6 4 9 9 C 1.53001 * 109.47017 * 119.99799 * 7 6 4 10 10 C 1.52998 * 109.47022 * 239.99833 * 7 6 4 11 11 C 1.50703 * 109.47093 * 175.00139 * 10 7 6 12 12 O 1.21298 * 120.00024 * 353.83311 * 11 10 7 13 13 N 1.34774 * 120.00112 * 173.83108 * 11 10 7 14 14 C 1.37094 * 119.99808 * 5.09686 * 13 11 10 15 15 H 1.07999 * 120.00254 * 325.18979 * 14 13 11 16 16 C 1.38947 * 119.99985 * 145.19418 * 14 13 11 17 17 N 1.31418 * 120.00223 * 336.98843 * 16 14 13 18 18 Si 1.86798 * 120.00386 * 156.98547 * 16 14 13 19 19 H 1.48504 * 109.46998 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47541 * 120.00043 * 18 16 14 21 21 H 1.48504 * 109.47449 * 240.00088 * 18 16 14 22 22 C 1.46506 * 120.00047 * 185.10153 * 13 11 10 23 23 C 1.52997 * 109.47002 * 89.99631 * 22 13 11 24 24 C 1.50707 * 109.46653 * 179.97438 * 23 22 13 25 25 O 1.20822 * 120.00146 * 0.02562 * 24 23 22 26 26 O 1.34235 * 119.99661 * 180.02562 * 24 23 22 27 27 N 1.30833 * 125.90172 * 179.69915 * 2 1 3 28 28 H 1.08990 * 109.47651 * 89.99894 * 1 2 3 29 29 H 1.09008 * 109.46334 * 210.00051 * 1 2 3 30 30 H 1.08999 * 109.46815 * 329.98978 * 1 2 3 31 31 H 1.07995 * 126.03973 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.47146 * 89.97220 * 5 4 3 33 33 H 1.08998 * 109.46699 * 209.97442 * 5 4 3 34 34 H 1.09001 * 109.46709 * 329.97156 * 5 4 3 35 35 H 1.09004 * 109.47271 * 179.97438 * 9 7 6 36 36 H 1.08995 * 109.47553 * 299.99530 * 9 7 6 37 37 H 1.09001 * 109.47157 * 59.99832 * 9 7 6 38 38 H 1.09002 * 109.47256 * 294.99686 * 10 7 6 39 39 H 1.08994 * 109.47313 * 55.00187 * 10 7 6 40 40 H 0.96993 * 120.00265 * 185.49351 * 17 16 14 41 41 H 1.08999 * 109.46867 * 210.00109 * 22 13 11 42 42 H 1.08996 * 109.46731 * 329.99432 * 22 13 11 43 43 H 1.08999 * 109.47700 * 299.99968 * 23 22 13 44 44 H 1.09001 * 109.47300 * 60.00698 * 23 22 13 45 45 H 0.96702 * 116.99594 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7154 -0.0006 5 6 4.8351 1.5990 -0.0002 6 7 3.6088 -0.6341 -0.0015 7 6 4.7899 -1.5007 -0.0018 8 1 5.6908 -0.8870 -0.0008 9 6 4.7742 -2.3847 1.2468 10 6 4.7747 -2.3830 -1.2517 11 6 6.0486 -3.1857 -1.3154 12 8 6.9335 -2.9839 -0.5108 13 7 6.2045 -4.1279 -2.2664 14 6 5.2508 -4.2850 -3.2386 15 1 4.2083 -4.1310 -3.0022 16 6 5.6253 -4.6423 -4.5280 17 7 6.8461 -4.3984 -4.9491 18 14 4.3938 -5.4695 -5.6631 19 1 3.0984 -5.6304 -4.9550 20 1 4.1952 -4.6317 -6.8730 21 1 4.9084 -6.8037 -6.0639 22 6 7.3933 -4.9842 -2.2612 23 6 7.1159 -6.2366 -1.4273 24 6 8.3386 -7.1177 -1.4225 25 8 9.3300 -6.7786 -2.0240 26 8 8.3260 -8.2794 -0.7500 27 7 2.2742 -1.0598 0.0056 28 1 -0.3634 0.0000 -1.0275 29 1 -0.3632 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5140 31 1 1.9923 2.1598 -0.0004 32 1 5.1293 1.8117 1.0275 33 1 5.6512 1.0912 -0.5142 34 1 4.6075 2.5331 -0.5138 35 1 5.6528 -3.0298 1.2464 36 1 4.7851 -1.7561 2.1372 37 1 3.8733 -2.9983 1.2463 38 1 3.9210 -3.0593 -1.2086 39 1 4.6963 -1.7549 -2.1389 40 1 7.0848 -4.5743 -5.8726 41 1 7.6362 -5.2747 -3.2833 42 1 8.2322 -4.4385 -1.8295 43 1 6.8730 -5.9462 -0.4052 44 1 6.2770 -6.7823 -1.8591 45 1 9.1338 -8.8103 -0.7758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001607629938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:22 Heat of formation + Delta-G solvation = -60.893996 kcal Electronic energy + Delta-G solvation = -27921.806856 eV Core-core repulsion = 23940.938701 eV Total energy + Delta-G solvation = -3980.868155 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.09689 -39.87946 -38.83396 -35.96772 -35.51489 -34.60467 -32.58920 -32.01843 -30.97574 -30.53759 -27.67942 -27.27457 -26.77431 -25.29300 -23.89008 -21.85033 -20.46880 -20.25428 -19.23564 -18.58032 -17.80953 -16.91329 -16.58656 -16.00231 -15.76919 -15.33812 -15.11655 -14.87761 -14.49103 -14.19003 -13.86599 -13.62447 -13.28261 -13.15269 -13.07619 -12.80460 -12.72666 -12.61279 -12.41306 -12.31396 -12.01579 -11.89175 -11.70178 -11.36198 -11.31844 -11.19380 -11.09192 -10.96074 -10.72338 -10.63277 -10.45140 -10.19146 -10.15660 -10.07064 -9.29794 -8.80930 -8.62184 -8.22908 -7.70001 -6.50179 -4.18504 2.13044 2.62413 2.73981 2.98207 3.02711 3.16026 3.19619 3.35611 3.72532 4.03279 4.53179 4.77425 4.81096 4.89322 5.10876 5.22836 5.32902 5.42680 5.47832 5.54190 5.55648 5.67860 5.73179 5.75748 5.83841 5.90181 5.92002 5.96889 6.06798 6.11568 6.18578 6.29041 6.32075 6.38763 6.52103 6.56267 6.76529 6.81733 6.96603 7.23113 7.35849 7.41179 7.75270 8.04886 8.21585 8.26741 8.92810 9.31178 9.74268 10.51361 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.003764 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.724022 B = 7437.149407 C = 8649.560493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.060 3.940 3 C -0.282 4.282 4 C 0.084 3.916 5 C -0.095 4.095 6 N -0.354 5.354 7 C 0.173 3.827 8 H 0.107 0.893 9 C -0.156 4.156 10 C -0.124 4.124 11 C 0.476 3.524 12 O -0.604 6.604 13 N -0.432 5.432 14 C -0.353 4.353 15 H 0.095 0.905 16 C 0.047 3.953 17 N -0.851 5.851 18 Si 0.912 3.088 19 H -0.265 1.265 20 H -0.280 1.280 21 H -0.278 1.278 22 C 0.122 3.878 23 C -0.124 4.124 24 C 0.483 3.517 25 O -0.513 6.513 26 O -0.524 6.524 27 N -0.289 5.289 28 H 0.073 0.927 29 H 0.069 0.931 30 H 0.072 0.928 31 H 0.140 0.860 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.049 0.951 37 H 0.061 0.939 38 H 0.093 0.907 39 H 0.089 0.911 40 H 0.273 0.727 41 H 0.119 0.881 42 H 0.068 0.932 43 H 0.096 0.904 44 H 0.105 0.895 45 H 0.401 0.599 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.995 4.305 7.735 10.691 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.106 4.106 3 C -0.312 4.312 4 C -0.044 4.044 5 C -0.153 4.153 6 N -0.136 5.136 7 C 0.072 3.928 8 H 0.125 0.875 9 C -0.214 4.214 10 C -0.164 4.164 11 C 0.265 3.735 12 O -0.492 6.492 13 N -0.150 5.150 14 C -0.480 4.480 15 H 0.113 0.887 16 C -0.160 4.160 17 N -0.486 5.486 18 Si 0.738 3.262 19 H -0.189 1.189 20 H -0.206 1.206 21 H -0.203 1.203 22 C -0.002 4.002 23 C -0.163 4.163 24 C 0.325 3.675 25 O -0.401 6.401 26 O -0.336 6.336 27 N -0.111 5.111 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.091 0.909 31 H 0.158 0.842 32 H 0.096 0.904 33 H 0.093 0.907 34 H 0.101 0.899 35 H 0.112 0.888 36 H 0.068 0.932 37 H 0.080 0.920 38 H 0.111 0.889 39 H 0.107 0.893 40 H 0.084 0.916 41 H 0.136 0.864 42 H 0.087 0.913 43 H 0.114 0.886 44 H 0.123 0.877 45 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -5.335 3.265 7.785 9.986 hybrid contribution -0.085 0.086 -0.876 0.884 sum -5.420 3.351 6.909 9.399 Atomic orbital electron populations 1.20101 0.87221 1.02719 1.02617 1.22232 0.96687 0.90990 1.00694 1.20999 0.91001 0.99392 1.19777 1.21104 0.97183 0.84979 1.01123 1.20470 0.93508 0.98170 1.03146 1.48923 1.05361 1.03893 1.55456 1.21149 0.83030 0.91732 0.96915 0.87518 1.22140 1.04090 0.99974 0.95163 1.21619 0.98765 0.98962 0.97087 1.20112 0.88342 0.81062 0.84033 1.90525 1.44041 1.70071 1.44528 1.43370 1.19904 1.27596 1.24093 1.19495 0.88988 1.50664 0.88883 0.88742 1.25382 0.96570 0.96548 0.97519 1.69852 1.19277 1.42609 1.16911 0.86106 0.80797 0.79375 0.79922 1.18925 1.20550 1.20333 1.21243 0.88427 0.87926 1.02653 1.21840 0.93714 0.96537 1.04197 1.23757 0.90176 0.79307 0.74252 1.90705 1.35369 1.72539 1.41482 1.84591 1.45618 1.33711 1.69692 1.77272 0.86568 1.22656 1.24646 0.90861 0.91249 0.90944 0.84215 0.90398 0.90744 0.89870 0.88788 0.93167 0.92013 0.88911 0.89257 0.91627 0.86352 0.91342 0.88587 0.87693 0.74089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.45 36.01 0.38 -0.35 16 2 C 0.06 0.89 7.22 -82.40 -0.59 0.29 16 3 C -0.28 -3.92 10.65 -40.01 -0.43 -4.34 16 4 C 0.08 1.23 6.93 -82.26 -0.57 0.66 16 5 C -0.09 -1.05 9.95 36.01 0.36 -0.69 16 6 N -0.35 -5.93 3.28 -50.69 -0.17 -6.09 16 7 C 0.17 2.98 2.76 -67.93 -0.19 2.79 16 8 H 0.11 1.81 6.39 -51.93 -0.33 1.48 16 9 C -0.16 -2.56 9.19 37.16 0.34 -2.22 16 10 C -0.12 -2.42 4.14 -27.88 -0.12 -2.54 16 11 C 0.48 10.67 7.23 -10.99 -0.08 10.59 16 12 O -0.60 -14.25 13.77 5.54 0.08 -14.17 16 13 N -0.43 -10.23 2.54 -114.81 -0.29 -10.52 16 14 C -0.35 -8.50 8.75 -14.94 -0.13 -8.63 16 15 H 0.09 2.21 6.85 -52.49 -0.36 1.85 16 16 C 0.05 1.15 4.94 -17.47 -0.09 1.06 16 17 N -0.85 -22.02 11.37 55.50 0.63 -21.39 16 18 Si 0.91 18.93 29.61 -169.99 -5.03 13.90 16 19 H -0.27 -5.40 7.11 56.52 0.40 -5.00 16 20 H -0.28 -5.85 7.11 56.52 0.40 -5.45 16 21 H -0.28 -5.78 7.11 56.52 0.40 -5.37 16 22 C 0.12 2.81 4.34 -4.04 -0.02 2.80 16 23 C -0.12 -2.36 6.14 -27.88 -0.17 -2.53 16 24 C 0.48 8.69 8.33 36.01 0.30 8.99 16 25 O -0.51 -10.79 16.74 -18.75 -0.31 -11.11 16 26 O -0.52 -7.33 13.42 -39.27 -0.53 -7.86 16 27 N -0.29 -5.03 12.43 33.67 0.42 -4.61 16 28 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.07 0.72 8.14 -51.92 -0.42 0.30 16 30 H 0.07 0.61 8.14 -51.93 -0.42 0.19 16 31 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.07 0.87 7.09 -51.93 -0.37 0.50 16 34 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 35 H 0.09 1.66 6.18 -51.93 -0.32 1.34 16 36 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 37 H 0.06 1.03 8.14 -51.93 -0.42 0.60 16 38 H 0.09 1.84 7.49 -51.93 -0.39 1.46 16 39 H 0.09 1.83 8.14 -51.93 -0.42 1.40 16 40 H 0.27 6.69 8.32 -40.82 -0.34 6.35 16 41 H 0.12 3.02 5.34 -51.93 -0.28 2.74 16 42 H 0.07 1.69 7.32 -51.93 -0.38 1.31 16 43 H 0.10 1.75 8.14 -51.93 -0.42 1.33 16 44 H 0.10 1.92 8.14 -51.93 -0.42 1.50 16 45 H 0.40 3.68 9.10 45.56 0.41 4.09 16 LS Contribution 379.04 15.07 5.71 5.71 Total: -1.00 -30.92 379.04 -6.30 -37.22 By element: Atomic # 1 Polarization: 18.85 SS G_CDS: -5.80 Total: 13.05 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: -1.00 Total: 5.87 kcal Atomic # 7 Polarization: -43.21 SS G_CDS: 0.59 Total: -42.62 kcal Atomic # 8 Polarization: -32.37 SS G_CDS: -0.76 Total: -33.14 kcal Atomic # 14 Polarization: 18.93 SS G_CDS: -5.03 Total: 13.90 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -30.92 -6.30 -37.22 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607629938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.675 kcal (2) G-P(sol) polarization free energy of solvation -30.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.296 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.219 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds