Wall clock time and date at job start Tue Mar 31 2020 14:34:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.39872 * 125.89600 * 2 1 4 4 C 1.35318 * 107.91621 * 180.02562 * 3 2 1 5 5 C 1.50705 * 126.12357 * 180.02562 * 4 3 2 6 6 N 1.34946 * 107.74802 * 0.02562 * 4 3 2 7 7 C 1.46497 * 126.03498 * 180.02562 * 6 4 3 8 8 H 1.09003 * 109.47149 * 0.02562 * 7 6 4 9 9 C 1.53001 * 109.47017 * 119.99799 * 7 6 4 10 10 C 1.52998 * 109.47022 * 239.99833 * 7 6 4 11 11 C 1.50703 * 109.47093 * 175.00139 * 10 7 6 12 12 O 1.21298 * 120.00024 * 353.83311 * 11 10 7 13 13 N 1.34774 * 120.00112 * 173.83108 * 11 10 7 14 14 C 1.37094 * 119.99808 * 5.09686 * 13 11 10 15 15 H 1.07999 * 120.00254 * 325.18979 * 14 13 11 16 16 C 1.38947 * 119.99985 * 145.19418 * 14 13 11 17 17 N 1.31418 * 120.00223 * 336.98843 * 16 14 13 18 18 Si 1.86798 * 120.00386 * 156.98547 * 16 14 13 19 19 H 1.48504 * 109.46998 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.47541 * 120.00043 * 18 16 14 21 21 H 1.48504 * 109.47449 * 240.00088 * 18 16 14 22 22 C 1.46506 * 120.00047 * 185.10153 * 13 11 10 23 23 C 1.52997 * 109.47002 * 89.99631 * 22 13 11 24 24 C 1.50707 * 109.46653 * 179.97438 * 23 22 13 25 25 O 1.20822 * 120.00146 * 0.02562 * 24 23 22 26 26 O 1.34235 * 119.99661 * 180.02562 * 24 23 22 27 27 N 1.30833 * 125.90172 * 179.69915 * 2 1 3 28 28 H 1.08990 * 109.47651 * 89.99894 * 1 2 3 29 29 H 1.09008 * 109.46334 * 210.00051 * 1 2 3 30 30 H 1.08999 * 109.46815 * 329.98978 * 1 2 3 31 31 H 1.07995 * 126.03973 * 359.97438 * 3 2 1 32 32 H 1.09001 * 109.47146 * 89.97220 * 5 4 3 33 33 H 1.08998 * 109.46699 * 209.97442 * 5 4 3 34 34 H 1.09001 * 109.46709 * 329.97156 * 5 4 3 35 35 H 1.09004 * 109.47271 * 179.97438 * 9 7 6 36 36 H 1.08995 * 109.47553 * 299.99530 * 9 7 6 37 37 H 1.09001 * 109.47157 * 59.99832 * 9 7 6 38 38 H 1.09002 * 109.47256 * 294.99686 * 10 7 6 39 39 H 1.08994 * 109.47313 * 55.00187 * 10 7 6 40 40 H 0.96993 * 120.00265 * 185.49351 * 17 16 14 41 41 H 1.08999 * 109.46867 * 210.00109 * 22 13 11 42 42 H 1.08996 * 109.46731 * 329.99432 * 22 13 11 43 43 H 1.08999 * 109.47700 * 299.99968 * 23 22 13 44 44 H 1.09001 * 109.47300 * 60.00698 * 23 22 13 45 45 H 0.96702 * 116.99594 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3271 1.1331 0.0000 4 6 3.6142 0.7154 -0.0006 5 6 4.8351 1.5990 -0.0002 6 7 3.6088 -0.6341 -0.0015 7 6 4.7899 -1.5007 -0.0018 8 1 5.6908 -0.8870 -0.0008 9 6 4.7742 -2.3847 1.2468 10 6 4.7747 -2.3830 -1.2517 11 6 6.0486 -3.1857 -1.3154 12 8 6.9335 -2.9839 -0.5108 13 7 6.2045 -4.1279 -2.2664 14 6 5.2508 -4.2850 -3.2386 15 1 4.2083 -4.1310 -3.0022 16 6 5.6253 -4.6423 -4.5280 17 7 6.8461 -4.3984 -4.9491 18 14 4.3938 -5.4695 -5.6631 19 1 3.0984 -5.6304 -4.9550 20 1 4.1952 -4.6317 -6.8730 21 1 4.9084 -6.8037 -6.0639 22 6 7.3933 -4.9842 -2.2612 23 6 7.1159 -6.2366 -1.4273 24 6 8.3386 -7.1177 -1.4225 25 8 9.3300 -6.7786 -2.0240 26 8 8.3260 -8.2794 -0.7500 27 7 2.2742 -1.0598 0.0056 28 1 -0.3634 0.0000 -1.0275 29 1 -0.3632 -0.8901 0.5139 30 1 -0.3633 0.8899 0.5140 31 1 1.9923 2.1598 -0.0004 32 1 5.1293 1.8117 1.0275 33 1 5.6512 1.0912 -0.5142 34 1 4.6075 2.5331 -0.5138 35 1 5.6528 -3.0298 1.2464 36 1 4.7851 -1.7561 2.1372 37 1 3.8733 -2.9983 1.2463 38 1 3.9210 -3.0593 -1.2086 39 1 4.6963 -1.7549 -2.1389 40 1 7.0848 -4.5743 -5.8726 41 1 7.6362 -5.2747 -3.2833 42 1 8.2322 -4.4385 -1.8295 43 1 6.8730 -5.9462 -0.4052 44 1 6.2770 -6.7823 -1.8591 45 1 9.1338 -8.8103 -0.7758 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001607629938.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:34:21 Heat of formation + Delta-G solvation = -79.706822 kcal Electronic energy + Delta-G solvation = -27922.622641 eV Core-core repulsion = 23940.938701 eV Total energy + Delta-G solvation = -3981.683941 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.24962 -41.36124 -40.55381 -37.46245 -37.00916 -36.14608 -33.88317 -33.65052 -32.56801 -31.72653 -29.07815 -28.45384 -27.80369 -27.14355 -25.53010 -23.18242 -21.94003 -21.39351 -21.02241 -19.79011 -19.24632 -18.55342 -18.14176 -17.59382 -17.21196 -16.87670 -16.44288 -16.37889 -16.08578 -15.86307 -15.25739 -14.76421 -14.46812 -14.38165 -14.26013 -14.18765 -14.02515 -13.98055 -13.82171 -13.52934 -13.18739 -13.11062 -13.02465 -12.93977 -12.79339 -12.67227 -12.58073 -12.54410 -12.23178 -12.09833 -12.09599 -11.88988 -11.67741 -11.29848 -11.12869 -10.46144 -9.96133 -9.57831 -9.35887 -8.36487 -6.10481 0.99328 1.17420 1.36156 1.45886 1.53013 1.58184 1.85602 1.91874 2.04154 2.32400 2.95488 2.99488 3.54029 3.76879 3.86843 3.94093 4.00585 4.08955 4.13198 4.22855 4.36978 4.49442 4.57635 4.63656 4.65586 4.70589 4.72635 4.76789 4.82303 4.88561 4.91007 4.97995 5.01623 5.07042 5.15090 5.19236 5.33096 5.42549 5.49375 5.58630 5.89556 5.93017 6.20114 6.33810 6.91382 6.98732 7.05159 7.47492 7.90024 8.65834 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.012062 B = 0.003764 C = 0.003236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2320.724022 B = 7437.149407 C = 8649.560493 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.055 3.945 3 C -0.285 4.285 4 C 0.073 3.927 5 C -0.093 4.093 6 N -0.371 5.371 7 C 0.181 3.819 8 H 0.107 0.893 9 C -0.145 4.145 10 C -0.108 4.108 11 C 0.471 3.529 12 O -0.618 6.618 13 N -0.444 5.444 14 C -0.360 4.360 15 H 0.099 0.901 16 C 0.008 3.992 17 N -0.887 5.887 18 Si 0.976 3.024 19 H -0.255 1.255 20 H -0.281 1.281 21 H -0.276 1.276 22 C 0.127 3.873 23 C -0.117 4.117 24 C 0.495 3.505 25 O -0.549 6.549 26 O -0.507 6.507 27 N -0.332 5.332 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.099 0.901 31 H 0.169 0.831 32 H 0.094 0.906 33 H 0.063 0.937 34 H 0.106 0.894 35 H 0.079 0.921 36 H 0.064 0.936 37 H 0.056 0.944 38 H 0.088 0.912 39 H 0.077 0.923 40 H 0.274 0.726 41 H 0.095 0.905 42 H 0.042 0.958 43 H 0.105 0.895 44 H 0.115 0.885 45 H 0.427 0.573 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.725 4.692 8.409 12.345 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.111 4.111 3 C -0.314 4.314 4 C -0.054 4.054 5 C -0.151 4.151 6 N -0.154 5.154 7 C 0.079 3.921 8 H 0.125 0.875 9 C -0.202 4.202 10 C -0.148 4.148 11 C 0.260 3.740 12 O -0.506 6.506 13 N -0.162 5.162 14 C -0.487 4.487 15 H 0.117 0.883 16 C -0.196 4.196 17 N -0.524 5.524 18 Si 0.800 3.200 19 H -0.179 1.179 20 H -0.206 1.206 21 H -0.202 1.202 22 C 0.002 3.998 23 C -0.155 4.155 24 C 0.338 3.662 25 O -0.440 6.440 26 O -0.321 6.321 27 N -0.155 5.155 28 H 0.101 0.899 29 H 0.087 0.913 30 H 0.117 0.883 31 H 0.187 0.813 32 H 0.113 0.887 33 H 0.082 0.918 34 H 0.125 0.875 35 H 0.097 0.903 36 H 0.083 0.917 37 H 0.075 0.925 38 H 0.106 0.894 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.113 0.887 42 H 0.061 0.939 43 H 0.124 0.876 44 H 0.133 0.867 45 H 0.289 0.711 Dipole moment (debyes) X Y Z Total from point charges -7.074 3.634 8.488 11.631 hybrid contribution 0.458 0.009 -1.026 1.123 sum -6.615 3.643 7.462 10.617 Atomic orbital electron populations 1.20249 0.84602 1.04039 1.03580 1.22974 0.98434 0.90780 0.98929 1.21410 0.90515 1.00537 1.18972 1.21776 0.98884 0.84443 1.00277 1.20592 0.91787 0.98305 1.04429 1.48833 1.04948 1.04578 1.56995 1.20921 0.83765 0.91620 0.95772 0.87510 1.21999 1.02989 0.99740 0.95505 1.21448 0.96825 0.98555 0.98001 1.20578 0.89087 0.80849 0.83451 1.90506 1.44806 1.70384 1.44922 1.43571 1.19937 1.28255 1.24431 1.19720 0.89234 1.50606 0.89146 0.88298 1.26161 0.98069 0.96619 0.98791 1.69967 1.21163 1.43964 1.17303 0.85128 0.78938 0.78077 0.77851 1.17896 1.20644 1.20193 1.21014 0.87710 0.89234 1.01805 1.21609 0.94720 0.95302 1.03903 1.23355 0.89012 0.79980 0.73816 1.90706 1.36438 1.73632 1.43214 1.84506 1.47211 1.32207 1.68134 1.77231 0.87093 1.24381 1.26810 0.89942 0.91293 0.88280 0.81333 0.88703 0.91824 0.87529 0.90276 0.91692 0.92511 0.89363 0.90503 0.91629 0.88695 0.93899 0.87642 0.86666 0.71138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.27 10.45 71.24 0.74 -0.52 16 2 C 0.05 1.54 7.22 43.10 0.31 1.85 16 3 C -0.29 -7.28 10.65 21.99 0.23 -7.04 16 4 C 0.07 2.04 6.93 41.41 0.29 2.33 16 5 C -0.09 -1.89 9.95 71.24 0.71 -1.18 16 6 N -0.37 -12.26 3.28 -314.30 -1.03 -13.29 16 7 C 0.18 6.28 2.76 44.99 0.12 6.40 16 8 H 0.11 3.66 6.39 -2.39 -0.02 3.64 16 9 C -0.14 -4.75 9.19 71.98 0.66 -4.09 16 10 C -0.11 -4.30 4.14 29.85 0.12 -4.18 16 11 C 0.47 21.66 7.23 87.66 0.63 22.29 16 12 O -0.62 -29.86 13.77 -3.09 -0.04 -29.90 16 13 N -0.44 -21.54 2.54 -635.54 -1.61 -23.15 16 14 C -0.36 -17.55 8.75 84.04 0.74 -16.81 16 15 H 0.10 4.66 6.85 -2.91 -0.02 4.64 16 16 C 0.01 0.38 4.94 84.92 0.42 0.80 16 17 N -0.89 -47.01 11.37 21.66 0.25 -46.77 16 18 Si 0.98 38.75 29.61 68.60 2.03 40.78 16 19 H -0.26 -9.65 7.11 99.48 0.71 -8.94 16 20 H -0.28 -11.12 7.11 99.48 0.71 -10.41 16 21 H -0.28 -10.85 7.11 99.48 0.71 -10.14 16 22 C 0.13 6.05 4.34 86.38 0.37 6.42 16 23 C -0.12 -4.45 6.14 29.85 0.18 -4.26 16 24 C 0.49 17.51 8.33 71.24 0.59 18.11 16 25 O -0.55 -23.30 16.74 21.98 0.37 -22.93 16 26 O -0.51 -13.06 13.42 -51.46 -0.69 -13.75 16 27 N -0.33 -11.42 12.43 -47.38 -0.59 -12.01 16 28 H 0.08 1.44 8.14 -2.39 -0.02 1.42 16 29 H 0.07 1.32 8.14 -2.38 -0.02 1.30 16 30 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 31 H 0.17 3.17 8.06 -2.91 -0.02 3.15 16 32 H 0.09 1.60 8.14 -2.39 -0.02 1.58 16 33 H 0.06 1.43 7.09 -2.39 -0.02 1.42 16 34 H 0.11 1.64 8.14 -2.39 -0.02 1.62 16 35 H 0.08 2.83 6.18 -2.38 -0.01 2.81 16 36 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.06 1.89 8.14 -2.39 -0.02 1.87 16 38 H 0.09 3.59 7.49 -2.39 -0.02 3.57 16 39 H 0.08 3.24 8.14 -2.39 -0.02 3.22 16 40 H 0.27 13.73 8.32 -92.71 -0.77 12.96 16 41 H 0.10 5.03 5.34 -2.39 -0.01 5.02 16 42 H 0.04 2.21 7.32 -2.39 -0.02 2.19 16 43 H 0.11 3.81 8.14 -2.39 -0.02 3.80 16 44 H 0.12 4.15 8.14 -2.39 -0.02 4.13 16 45 H 0.43 6.68 9.10 -74.06 -0.67 6.01 16 Total: -1.00 -68.01 379.04 5.16 -62.85 By element: Atomic # 1 Polarization: 37.72 SS G_CDS: 0.34 Total: 38.06 kcal Atomic # 6 Polarization: 13.96 SS G_CDS: 6.13 Total: 20.09 kcal Atomic # 7 Polarization: -92.22 SS G_CDS: -2.99 Total: -95.21 kcal Atomic # 8 Polarization: -66.21 SS G_CDS: -0.37 Total: -66.58 kcal Atomic # 14 Polarization: 38.75 SS G_CDS: 2.03 Total: 40.78 kcal Total: -68.01 5.16 -62.85 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001607629938.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.853 kcal (2) G-P(sol) polarization free energy of solvation -68.011 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.158 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.853 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds