Wall clock time and date at job start Tue Mar 31 2020 14:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13597 * 1 3 3 C 1.47204 * 179.97438 * 2 1 4 4 C 1.53003 * 109.46714 * 294.98085 * 3 2 1 5 5 N 1.46500 * 109.46756 * 179.97438 * 4 3 2 6 6 C 1.46500 * 120.00487 * 269.99842 * 5 4 3 7 7 C 1.50693 * 109.47216 * 270.00058 * 6 5 4 8 8 H 1.07998 * 120.00011 * 0.02562 * 7 6 5 9 9 C 1.37883 * 119.99928 * 179.97438 * 7 6 5 10 10 N 1.31509 * 119.99901 * 0.02562 * 9 7 6 11 11 Si 1.86801 * 119.99677 * 180.02562 * 9 7 6 12 12 H 1.48498 * 109.47253 * 90.00531 * 11 9 7 13 13 H 1.48505 * 109.46680 * 210.00213 * 11 9 7 14 14 H 1.48497 * 109.47290 * 330.00228 * 11 9 7 15 15 C 1.34784 * 119.99936 * 89.99777 * 5 4 3 16 16 O 1.21284 * 119.99858 * 180.02562 * 15 5 4 17 17 C 1.50700 * 119.99874 * 0.02562 * 15 5 4 18 18 N 1.46902 * 109.47128 * 179.97438 * 17 15 5 19 19 C 1.46899 * 111.00035 * 175.05200 * 18 17 15 20 20 H 1.09000 * 109.46848 * 19.08979 * 19 18 17 21 21 C 1.52997 * 109.46828 * 139.09122 * 19 18 17 22 22 C 1.50704 * 109.47286 * 294.99832 * 21 19 18 23 23 O 1.20826 * 119.99524 * 0.02562 * 22 21 19 24 24 O 1.34224 * 120.00078 * 180.02562 * 22 21 19 25 25 C 1.52992 * 109.47065 * 259.08903 * 19 18 17 26 26 C 1.53005 * 117.50359 * 13.83260 * 25 19 18 27 27 C 1.52997 * 117.50216 * 305.17077 * 25 19 18 28 28 H 1.08998 * 109.47132 * 174.97864 * 3 2 1 29 29 H 1.09001 * 109.46970 * 54.98013 * 3 2 1 30 30 H 1.08998 * 109.47502 * 60.00005 * 4 3 2 31 31 H 1.09001 * 109.47343 * 299.99700 * 4 3 2 32 32 H 1.09001 * 109.46404 * 30.00416 * 6 5 4 33 33 H 1.08998 * 109.47279 * 149.99454 * 6 5 4 34 34 H 0.96999 * 119.99864 * 179.97438 * 10 9 7 35 35 H 1.09000 * 109.46842 * 59.99722 * 17 15 5 36 36 H 1.09002 * 109.46844 * 299.99597 * 17 15 5 37 37 H 1.00900 * 110.99940 * 299.00691 * 18 17 15 38 38 H 1.08998 * 109.47363 * 54.99781 * 21 19 18 39 39 H 1.09002 * 109.47129 * 175.00145 * 21 19 18 40 40 H 0.96701 * 116.99934 * 179.97438 * 24 22 21 41 41 H 1.09007 * 115.55225 * 159.49331 * 25 19 18 42 42 H 1.09007 * 117.49309 * 359.97438 * 26 25 19 43 43 H 1.08992 * 117.50306 * 145.01915 * 26 25 19 44 44 H 1.09008 * 117.49615 * 214.97994 * 27 25 19 45 45 H 1.08995 * 117.49918 * 359.97384 * 27 25 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.6080 0.0007 0.0000 4 6 3.1182 -0.6083 1.3076 5 7 4.5832 -0.6082 1.3074 6 6 5.3158 -1.7583 0.7717 7 6 5.5672 -2.7524 1.8759 8 1 5.2161 -2.5482 2.8766 9 6 6.2447 -3.9231 1.6084 10 7 6.6718 -4.1720 0.3898 11 14 6.5557 -5.1557 2.9772 12 1 5.4255 -6.1167 3.0443 13 1 7.8159 -5.8921 2.7032 14 1 6.6731 -4.4384 4.2721 15 6 5.2571 0.4500 1.8000 16 8 6.4700 0.4502 1.7994 17 6 4.5036 1.6328 2.3516 18 7 5.4582 2.6448 2.8232 19 6 4.7617 3.8621 3.2604 20 1 3.7148 3.6310 3.4569 21 6 5.4154 4.3927 4.5379 22 6 5.2187 3.3985 5.6532 23 8 4.6176 2.3708 5.4472 24 8 5.7110 3.6547 6.8753 25 6 4.8523 4.9237 2.1624 26 6 5.3086 4.4679 0.7749 27 6 6.2463 5.2982 1.6550 28 1 2.9709 1.0245 -0.0899 29 1 2.9716 -0.5889 -0.8416 30 1 2.7553 -1.6322 1.3976 31 1 2.7546 -0.0187 2.1492 32 1 4.7266 -2.2299 -0.0148 33 1 6.2680 -1.4231 0.3607 34 1 7.1488 -4.9954 0.2017 35 1 3.8774 1.3090 3.1830 36 1 3.8765 2.0608 1.5695 37 1 6.0405 2.2769 3.5605 38 1 6.4817 4.5399 4.3663 39 1 4.9572 5.3427 4.8130 40 1 5.5593 2.9874 7.5585 41 1 4.1049 5.7156 2.2113 42 1 5.5447 3.4117 0.6445 43 1 4.8619 4.9603 -0.0888 44 1 6.4159 6.3366 1.3699 45 1 7.0989 4.7887 2.1038 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608182985.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:14:31 Heat of formation + Delta-G solvation = -93.942794 kcal Electronic energy + Delta-G solvation = -27925.680841 eV Core-core repulsion = 23943.379582 eV Total energy + Delta-G solvation = -3982.301259 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50074 -40.67669 -39.05603 -37.96022 -37.09421 -36.64707 -35.30109 -34.79892 -32.40691 -32.08240 -29.55656 -27.37603 -25.79721 -25.29675 -24.03369 -23.10798 -22.26148 -20.38976 -19.89477 -19.05903 -18.81194 -18.33872 -17.85541 -17.68782 -17.28836 -16.99367 -16.81039 -16.32770 -16.06342 -15.69377 -15.29626 -15.21614 -14.72550 -14.52855 -14.28500 -14.14995 -14.07880 -13.61573 -13.53556 -13.37719 -13.09691 -13.01668 -12.92010 -12.72479 -12.62769 -12.50060 -12.47643 -12.20258 -12.16157 -12.00776 -11.84935 -11.67461 -11.60826 -10.97892 -10.72761 -10.58498 -10.45027 -9.43971 -9.31754 -8.17891 -6.30086 1.22679 1.37841 1.39977 1.49586 1.69163 1.83741 1.95486 2.14499 2.26975 2.43756 3.04506 3.09866 3.13580 3.34108 3.77897 3.88829 4.01452 4.06568 4.11950 4.19768 4.35665 4.40241 4.47229 4.49445 4.53817 4.64098 4.70338 4.83095 4.84384 4.94196 5.05640 5.08618 5.12734 5.26423 5.35030 5.50565 5.62196 5.63649 5.67714 5.88413 6.04229 6.14443 6.33283 6.60065 6.77281 6.84761 6.98134 7.35429 7.58520 8.88615 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.009100 B = 0.004089 C = 0.003395 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3076.066819 B = 6845.788019 C = 8245.640604 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.488 5.488 2 C 0.246 3.754 3 C -0.037 4.037 4 C 0.114 3.886 5 N -0.600 5.600 6 C 0.262 3.738 7 C -0.540 4.540 8 H 0.048 0.952 9 C 0.013 3.987 10 N -0.924 5.924 11 Si 0.957 3.043 12 H -0.267 1.267 13 H -0.282 1.282 14 H -0.277 1.277 15 C 0.503 3.497 16 O -0.576 6.576 17 C 0.058 3.942 18 N -0.667 5.667 19 C 0.125 3.875 20 H 0.069 0.931 21 C -0.116 4.116 22 C 0.475 3.525 23 O -0.551 6.551 24 O -0.515 6.515 25 C -0.139 4.139 26 C -0.175 4.175 27 C -0.167 4.167 28 H 0.136 0.864 29 H 0.122 0.878 30 H 0.082 0.918 31 H 0.098 0.902 32 H 0.034 0.966 33 H 0.004 0.996 34 H 0.266 0.734 35 H 0.066 0.934 36 H 0.124 0.876 37 H 0.336 0.664 38 H 0.121 0.879 39 H 0.147 0.853 40 H 0.425 0.575 41 H 0.128 0.872 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.102 0.898 45 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.684 21.647 6.766 23.381 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.166 5.166 2 C -0.071 4.071 3 C -0.078 4.078 4 C -0.010 4.010 5 N -0.332 5.332 6 C 0.141 3.859 7 C -0.579 4.579 8 H 0.066 0.934 9 C -0.186 4.186 10 N -0.564 5.564 11 Si 0.782 3.218 12 H -0.192 1.192 13 H -0.207 1.207 14 H -0.202 1.202 15 C 0.291 3.709 16 O -0.455 6.455 17 C -0.074 4.074 18 N -0.299 5.299 19 C 0.015 3.985 20 H 0.087 0.913 21 C -0.154 4.154 22 C 0.319 3.681 23 O -0.442 6.442 24 O -0.328 6.328 25 C -0.158 4.158 26 C -0.212 4.212 27 C -0.204 4.204 28 H 0.154 0.846 29 H 0.140 0.860 30 H 0.100 0.900 31 H 0.116 0.884 32 H 0.052 0.948 33 H 0.022 0.978 34 H 0.075 0.925 35 H 0.084 0.916 36 H 0.142 0.858 37 H 0.155 0.845 38 H 0.139 0.861 39 H 0.164 0.836 40 H 0.286 0.714 41 H 0.146 0.854 42 H 0.104 0.896 43 H 0.113 0.887 44 H 0.120 0.880 45 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -6.610 21.762 5.686 23.443 hybrid contribution 0.484 -2.133 1.784 2.822 sum -6.125 19.629 7.470 21.877 Atomic orbital electron populations 1.81239 1.14320 1.10880 1.10164 1.29132 0.94924 0.91373 0.91695 1.19823 0.80134 1.06520 1.01284 1.21473 0.79351 1.03278 0.96944 1.48081 1.06569 1.17718 1.60814 1.18766 0.91467 0.82299 0.93401 1.21731 1.36423 1.03648 0.96087 0.93365 1.25698 0.95199 0.99965 0.97788 1.70018 1.39097 1.26375 1.20929 0.85577 0.77968 0.78951 0.79269 1.19183 1.20745 1.20230 1.21181 0.87879 0.84143 0.77655 1.90651 1.16296 1.81422 1.57088 1.21874 0.94244 0.90348 1.00981 1.60280 1.21879 1.05383 1.42343 1.20939 0.97077 0.89217 0.91222 0.91259 1.21774 1.06205 0.98585 0.88793 1.24047 0.73797 0.86410 0.83849 1.90770 1.40832 1.29064 1.83580 1.84489 1.73442 1.53490 1.21396 1.22333 0.98909 1.00034 0.94531 1.22873 1.04190 1.00930 0.93235 1.22810 0.93251 1.00193 1.04177 0.84613 0.86035 0.89964 0.88355 0.94807 0.97783 0.92545 0.91585 0.85794 0.84508 0.86065 0.83567 0.71396 0.85379 0.89610 0.88726 0.88011 0.90012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.49 -13.94 18.54 20.01 0.37 -13.57 16 2 C 0.25 5.62 15.43 89.44 1.38 7.00 16 3 C -0.04 -0.71 6.03 28.79 0.17 -0.54 16 4 C 0.11 3.05 5.17 86.38 0.45 3.50 16 5 N -0.60 -22.66 2.46 -826.15 -2.03 -24.69 16 6 C 0.26 13.04 5.16 85.63 0.44 13.49 16 7 C -0.54 -30.10 9.39 25.60 0.24 -29.86 16 8 H 0.05 2.71 7.81 -2.91 -0.02 2.69 16 9 C 0.01 0.72 5.46 84.66 0.46 1.18 16 10 N -0.92 -54.43 13.29 21.45 0.28 -54.15 16 11 Si 0.96 44.68 29.54 68.60 2.03 46.71 16 12 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 13 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 14 H -0.28 -12.94 7.11 99.48 0.71 -12.24 16 15 C 0.50 19.18 7.72 87.66 0.68 19.86 16 16 O -0.58 -28.18 15.89 -3.04 -0.05 -28.23 16 17 C 0.06 1.53 3.78 85.56 0.32 1.85 16 18 N -0.67 -16.64 3.99 -495.59 -1.98 -18.62 16 19 C 0.13 2.08 2.09 44.91 0.09 2.18 16 20 H 0.07 1.17 7.46 -2.39 -0.02 1.15 16 21 C -0.12 -1.50 5.11 29.85 0.15 -1.34 16 22 C 0.47 8.61 7.75 71.24 0.55 9.16 16 23 O -0.55 -14.35 15.13 21.96 0.33 -14.02 16 24 O -0.51 -7.18 13.42 -51.36 -0.69 -7.87 16 25 C -0.14 -1.93 5.79 -10.80 -0.06 -1.99 16 26 C -0.18 -3.19 9.84 30.62 0.30 -2.89 16 27 C -0.17 -2.65 9.74 30.62 0.30 -2.35 16 28 H 0.14 1.95 7.22 -2.39 -0.02 1.94 16 29 H 0.12 2.40 8.14 -2.39 -0.02 2.38 16 30 H 0.08 2.40 8.07 -2.39 -0.02 2.38 16 31 H 0.10 2.18 6.44 -2.39 -0.02 2.16 16 32 H 0.03 1.66 8.07 -2.39 -0.02 1.64 16 33 H 0.00 0.24 7.42 -2.39 -0.02 0.22 16 34 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 35 H 0.07 1.76 6.94 -2.39 -0.02 1.74 16 36 H 0.12 2.47 7.06 -2.39 -0.02 2.45 16 37 H 0.34 9.98 6.79 -89.69 -0.61 9.37 16 38 H 0.12 1.51 7.83 -2.39 -0.02 1.49 16 39 H 0.15 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.42 3.25 9.10 -74.06 -0.67 2.57 16 41 H 0.13 1.19 8.14 -2.38 -0.02 1.17 16 42 H 0.09 2.12 6.48 -2.38 -0.02 2.10 16 43 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.10 1.26 8.14 -2.38 -0.02 1.24 16 45 H 0.08 1.58 8.00 -2.39 -0.02 1.56 16 Total: -1.00 -79.59 385.74 3.50 -76.09 By element: Atomic # 1 Polarization: 19.36 SS G_CDS: -0.25 Total: 19.12 kcal Atomic # 6 Polarization: 13.76 SS G_CDS: 5.48 Total: 19.24 kcal Atomic # 7 Polarization: -107.68 SS G_CDS: -3.35 Total: -111.03 kcal Atomic # 8 Polarization: -49.71 SS G_CDS: -0.41 Total: -50.12 kcal Atomic # 14 Polarization: 44.68 SS G_CDS: 2.03 Total: 46.71 kcal Total: -79.59 3.50 -76.09 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608182985.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.856 kcal (2) G-P(sol) polarization free energy of solvation -79.590 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.087 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds