Wall clock time and date at job start Tue Mar 31 2020 14:22:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00095 * 2 1 4 4 H 1.48501 * 109.46995 * 239.99770 * 3 2 1 5 5 H 1.48501 * 109.47189 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47161 * 119.99666 * 3 2 1 7 7 C 1.38815 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99599 * 163.08760 * 7 2 1 9 9 N 1.36932 * 120.00287 * 343.08069 * 7 2 1 10 10 C 1.46931 * 120.62874 * 331.82521 * 9 7 2 11 11 C 1.53198 * 108.77349 * 233.62501 * 10 9 7 12 12 C 1.53040 * 109.31432 * 305.37051 * 11 10 9 13 13 N 1.46495 * 109.45925 * 181.38314 * 12 11 10 14 14 C 1.34781 * 120.00010 * 154.99268 * 13 12 11 15 15 O 1.21589 * 119.99760 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00196 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00124 * 180.02562 * 16 14 13 18 18 H 1.08996 * 110.86609 * 34.29663 * 17 16 14 19 19 C 1.54575 * 110.97874 * 270.47907 * 17 16 14 20 20 C 1.51114 * 104.84662 * 266.90203 * 19 17 16 21 21 C 1.32702 * 110.74213 * 343.39558 * 20 19 17 22 22 C 1.46946 * 124.63074 * 179.97438 * 21 20 19 23 23 O 1.21536 * 119.99724 * 359.97438 * 22 21 20 24 24 O 1.34795 * 120.00254 * 179.97438 * 22 21 20 25 25 C 1.51121 * 110.74596 * 359.97438 * 21 20 19 26 26 C 1.53040 * 109.54083 * 61.35857 * 12 11 10 27 27 C 1.46920 * 120.63125 * 151.84221 * 9 7 2 28 28 H 0.97000 * 119.99887 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.58575 * 113.84301 * 10 9 7 30 30 H 1.08997 * 109.58925 * 353.41085 * 10 9 7 31 31 H 1.09000 * 109.49635 * 185.41069 * 11 10 9 32 32 H 1.09006 * 109.52113 * 65.33478 * 11 10 9 33 33 H 1.09000 * 109.45350 * 301.35390 * 12 11 10 34 34 H 0.97003 * 120.00291 * 335.00018 * 13 12 11 35 35 H 0.96997 * 119.99938 * 0.02562 * 16 14 13 36 36 H 1.09007 * 110.36687 * 25.74802 * 19 17 16 37 37 H 1.08999 * 110.36409 * 147.95150 * 19 17 16 38 38 H 1.07998 * 124.62437 * 163.39206 * 20 19 17 39 39 H 0.96710 * 116.99952 * 179.97438 * 24 22 21 40 40 H 1.08994 * 110.36402 * 257.76745 * 25 21 20 41 41 H 1.08996 * 110.36415 * 135.44378 * 25 21 20 42 42 H 1.09006 * 109.49148 * 58.59042 * 26 12 11 43 43 H 1.08997 * 109.49807 * 178.68064 * 26 12 11 44 44 H 1.09003 * 109.58851 * 246.15723 * 27 9 7 45 45 H 1.08999 * 109.58813 * 6.44442 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2225 -0.2715 9 7 1.3700 -2.3623 0.3462 10 6 0.2262 -2.3399 1.2681 11 6 0.4981 -3.3186 2.4150 12 6 0.8131 -4.7003 1.8373 13 7 1.0412 -5.6465 2.9322 14 6 0.8382 -6.9646 2.7371 15 8 0.4660 -7.3683 1.6522 16 7 1.0486 -7.8352 3.7442 17 6 0.8284 -9.2679 3.5320 18 1 1.0916 -9.5545 2.5138 19 6 -0.6318 -9.6574 3.8566 20 6 -0.6038 -10.0932 5.3033 21 6 0.6393 -10.3427 5.6950 22 6 1.0166 -10.7860 7.0443 23 8 0.1611 -10.9475 7.8922 24 8 2.3116 -11.0134 7.3415 25 6 1.6140 -10.1089 4.5641 26 6 2.0682 -4.6168 0.9657 27 6 1.8140 -3.6529 -0.1976 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6769 -2.6410 0.7373 30 1 0.0991 -1.3341 1.6685 31 1 -0.3823 -3.3834 3.0543 32 1 1.3477 -2.9667 3.0003 33 1 -0.0271 -5.0409 1.2322 34 1 1.3384 -5.3245 3.7976 35 1 1.3458 -7.5132 4.6095 36 1 -1.2904 -8.7978 3.7320 37 1 -0.9563 -10.4787 3.2177 38 1 -1.4764 -10.1884 5.9325 39 1 2.5109 -11.3033 8.2423 40 1 1.9211 -11.0584 4.1256 41 1 2.4830 -9.5560 4.9205 42 1 2.9032 -4.2525 1.5643 43 1 2.3053 -5.6058 0.5736 44 1 1.0403 -4.0611 -0.8479 45 1 2.7332 -3.5130 -0.7664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:04 Heat of formation + Delta-G solvation = -83.785874 kcal Electronic energy + Delta-G solvation = -27060.279211 eV Core-core repulsion = 23078.418390 eV Total energy + Delta-G solvation = -3981.860822 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.85903 -40.08507 -38.61654 -37.25746 -36.46290 -34.36156 -33.76868 -32.01009 -30.16611 -29.58660 -29.18678 -28.35654 -24.97885 -23.89979 -22.51175 -22.14168 -21.15932 -20.58437 -19.48738 -19.22131 -18.31706 -18.14158 -17.37713 -16.80872 -16.53563 -15.98945 -15.31456 -14.97617 -14.64128 -14.54893 -14.11346 -13.72631 -13.54027 -13.48641 -13.21964 -13.15403 -12.94063 -12.64053 -12.31856 -12.31286 -12.07976 -11.99775 -11.67791 -11.44363 -11.10665 -11.00637 -10.84975 -10.71162 -10.49623 -10.26904 -10.07727 -10.02339 -9.75876 -9.61634 -9.51495 -9.25746 -8.61945 -8.43481 -6.67686 -5.79130 -3.21239 0.65625 2.50859 2.62338 2.74468 3.30402 3.38511 3.44226 3.45318 4.04590 4.11675 4.29932 4.49886 4.64821 4.70270 4.94908 5.13194 5.23631 5.34307 5.38419 5.41364 5.47633 5.51884 5.61075 5.62957 5.80694 5.90824 5.94766 6.02980 6.09497 6.30058 6.36588 6.40893 6.50806 6.58725 6.62039 6.81556 6.89768 6.99789 7.10541 7.32830 7.46723 7.62305 7.79503 8.12144 8.45297 8.72821 9.21316 9.84599 10.41783 11.29831 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029027 B = 0.002127 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.385304 B =13163.163507 C =13368.038065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.904 5.904 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.283 1.283 5 H -0.291 1.291 6 H -0.284 1.284 7 C -0.252 4.252 8 H 0.065 0.935 9 N -0.593 5.593 10 C 0.175 3.825 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.739 5.739 14 C 0.703 3.297 15 O -0.589 6.589 16 N -0.744 5.744 17 C 0.163 3.837 18 H 0.109 0.891 19 C -0.125 4.125 20 C -0.039 4.039 21 C -0.192 4.192 22 C 0.535 3.465 23 O -0.520 6.520 24 O -0.511 6.511 25 C -0.087 4.087 26 C -0.139 4.139 27 C 0.147 3.853 28 H 0.254 0.746 29 H 0.021 0.979 30 H 0.091 0.909 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.081 0.919 34 H 0.391 0.609 35 H 0.395 0.605 36 H 0.093 0.907 37 H 0.103 0.897 38 H 0.142 0.858 39 H 0.413 0.587 40 H 0.096 0.904 41 H 0.087 0.913 42 H 0.056 0.944 43 H 0.054 0.946 44 H 0.020 0.980 45 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.348 -21.424 13.647 25.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.209 1.209 5 H -0.217 1.217 6 H -0.211 1.211 7 C -0.382 4.382 8 H 0.083 0.917 9 N -0.316 5.316 10 C 0.048 3.952 11 C -0.186 4.186 12 C 0.065 3.935 13 N -0.392 5.392 14 C 0.403 3.597 15 O -0.467 6.467 16 N -0.400 5.400 17 C 0.056 3.944 18 H 0.127 0.873 19 C -0.163 4.163 20 C -0.058 4.058 21 C -0.193 4.193 22 C 0.381 3.619 23 O -0.410 6.410 24 O -0.323 6.323 25 C -0.125 4.125 26 C -0.179 4.179 27 C 0.020 3.980 28 H 0.064 0.936 29 H 0.039 0.961 30 H 0.109 0.891 31 H 0.072 0.928 32 H 0.077 0.923 33 H 0.099 0.901 34 H 0.224 0.776 35 H 0.228 0.772 36 H 0.111 0.889 37 H 0.121 0.879 38 H 0.160 0.840 39 H 0.271 0.729 40 H 0.115 0.885 41 H 0.105 0.895 42 H 0.075 0.925 43 H 0.073 0.927 44 H 0.038 0.962 45 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 1.581 -21.529 12.402 24.896 hybrid contribution 0.785 0.906 1.660 2.047 sum 2.366 -20.623 14.062 25.073 Atomic orbital electron populations 1.70015 1.05237 1.25633 1.53910 1.25058 0.95301 0.98422 1.00914 0.86362 0.78893 0.83341 0.78118 1.20877 1.21657 1.21079 1.19147 0.92553 0.84789 1.41691 0.91705 1.44090 1.35821 1.01670 1.49984 1.20746 0.88922 0.97884 0.87651 1.22548 1.00466 0.94787 1.00833 1.20913 0.98344 0.87509 0.86714 1.45573 1.72538 1.04930 1.16133 1.16016 0.78425 0.81309 0.83977 1.90924 1.53505 1.77911 1.24371 1.45160 1.74412 1.06116 1.14271 1.21488 0.93179 0.79455 1.00237 0.87308 1.22092 0.99060 1.02795 0.92386 1.24327 0.96452 0.88279 0.96693 1.20883 0.96931 1.09442 0.92047 1.20571 0.79905 0.73363 0.88097 1.90928 1.51182 1.49275 1.49643 1.84622 1.28342 1.80183 1.39119 1.21472 0.97496 1.01008 0.92523 1.22389 0.97242 0.99484 0.98824 1.20877 0.97877 0.86512 0.92695 0.93554 0.96075 0.89052 0.92806 0.92257 0.90058 0.77617 0.77175 0.88857 0.87857 0.84004 0.72878 0.88529 0.89475 0.92492 0.92689 0.96171 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.98 11.20 55.49 0.62 -25.36 16 2 C 0.00 0.04 4.92 -17.43 -0.09 -0.04 16 3 Si 0.90 21.47 29.59 -169.99 -5.03 16.44 16 4 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 5 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 6 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 7 C -0.25 -6.86 9.58 -15.06 -0.14 -7.01 16 8 H 0.07 1.73 7.88 -52.49 -0.41 1.32 16 9 N -0.59 -14.75 2.99 -172.32 -0.52 -15.26 16 10 C 0.17 4.07 5.30 -3.70 -0.02 4.05 16 11 C -0.15 -2.64 5.55 -26.61 -0.15 -2.79 16 12 C 0.17 2.90 2.41 -67.89 -0.16 2.73 16 13 N -0.74 -9.98 5.08 -58.64 -0.30 -10.28 16 14 C 0.70 9.73 8.53 -86.91 -0.74 8.99 16 15 O -0.59 -10.56 15.70 5.29 0.08 -10.48 16 16 N -0.74 -7.07 5.15 -57.05 -0.29 -7.36 16 17 C 0.16 1.33 3.46 -66.27 -0.23 1.10 16 18 H 0.11 1.02 7.63 -51.93 -0.40 0.63 16 19 C -0.13 -0.92 6.53 -26.85 -0.18 -1.09 16 20 C -0.04 -0.28 10.43 -35.99 -0.38 -0.65 16 21 C -0.19 -1.41 6.09 -102.78 -0.63 -2.04 16 22 C 0.54 4.54 8.31 34.26 0.28 4.82 16 23 O -0.52 -5.98 17.55 -19.29 -0.34 -6.32 16 24 O -0.51 -3.06 13.25 -40.75 -0.54 -3.60 16 25 C -0.09 -0.55 6.18 -26.84 -0.17 -0.72 16 26 C -0.14 -2.52 5.65 -26.61 -0.15 -2.67 16 27 C 0.15 3.16 6.52 -3.71 -0.02 3.14 16 28 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.09 2.37 6.06 -51.93 -0.31 2.05 16 31 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.58 7.58 -51.93 -0.39 1.19 16 34 H 0.39 4.21 8.62 -40.82 -0.35 3.86 16 35 H 0.39 2.90 8.63 -40.82 -0.35 2.55 16 36 H 0.09 0.82 8.09 -51.93 -0.42 0.40 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.14 0.95 8.03 -52.49 -0.42 0.53 16 39 H 0.41 0.75 9.11 45.56 0.42 1.17 16 40 H 0.10 0.51 8.14 -51.93 -0.42 0.09 16 41 H 0.09 0.54 8.06 -51.93 -0.42 0.12 16 42 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.56 16 44 H 0.02 0.45 8.14 -51.93 -0.42 0.03 16 45 H 0.06 1.17 7.93 -51.93 -0.41 0.76 16 LS Contribution 372.36 15.07 5.61 5.61 Total: -1.00 -34.43 372.36 -9.46 -43.89 By element: Atomic # 1 Polarization: 10.90 SS G_CDS: -6.00 Total: 4.90 kcal Atomic # 6 Polarization: 10.58 SS G_CDS: -2.76 Total: 7.81 kcal Atomic # 7 Polarization: -57.78 SS G_CDS: -0.49 Total: -58.26 kcal Atomic # 8 Polarization: -19.61 SS G_CDS: -0.80 Total: -20.40 kcal Atomic # 14 Polarization: 21.47 SS G_CDS: -5.03 Total: 16.44 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -34.43 -9.46 -43.89 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.894 kcal (2) G-P(sol) polarization free energy of solvation -34.432 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds