Wall clock time and date at job start Tue Mar 31 2020 14:22:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31620 * 1 3 3 Si 1.86801 * 120.00095 * 2 1 4 4 H 1.48501 * 109.46995 * 239.99770 * 3 2 1 5 5 H 1.48501 * 109.47189 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47161 * 119.99666 * 3 2 1 7 7 C 1.38815 * 119.99671 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99599 * 163.08760 * 7 2 1 9 9 N 1.36932 * 120.00287 * 343.08069 * 7 2 1 10 10 C 1.46931 * 120.62874 * 331.82521 * 9 7 2 11 11 C 1.53198 * 108.77349 * 233.62501 * 10 9 7 12 12 C 1.53040 * 109.31432 * 305.37051 * 11 10 9 13 13 N 1.46495 * 109.45925 * 181.38314 * 12 11 10 14 14 C 1.34781 * 120.00010 * 154.99268 * 13 12 11 15 15 O 1.21589 * 119.99760 * 0.02562 * 14 13 12 16 16 N 1.34776 * 120.00196 * 179.97438 * 14 13 12 17 17 C 1.46496 * 120.00124 * 180.02562 * 16 14 13 18 18 H 1.08996 * 110.86609 * 34.29663 * 17 16 14 19 19 C 1.54575 * 110.97874 * 270.47907 * 17 16 14 20 20 C 1.51114 * 104.84662 * 266.90203 * 19 17 16 21 21 C 1.32702 * 110.74213 * 343.39558 * 20 19 17 22 22 C 1.46946 * 124.63074 * 179.97438 * 21 20 19 23 23 O 1.21536 * 119.99724 * 359.97438 * 22 21 20 24 24 O 1.34795 * 120.00254 * 179.97438 * 22 21 20 25 25 C 1.51121 * 110.74596 * 359.97438 * 21 20 19 26 26 C 1.53040 * 109.54083 * 61.35857 * 12 11 10 27 27 C 1.46920 * 120.63125 * 151.84221 * 9 7 2 28 28 H 0.97000 * 119.99887 * 0.02562 * 1 2 3 29 29 H 1.08996 * 109.58575 * 113.84301 * 10 9 7 30 30 H 1.08997 * 109.58925 * 353.41085 * 10 9 7 31 31 H 1.09000 * 109.49635 * 185.41069 * 11 10 9 32 32 H 1.09006 * 109.52113 * 65.33478 * 11 10 9 33 33 H 1.09000 * 109.45350 * 301.35390 * 12 11 10 34 34 H 0.97003 * 120.00291 * 335.00018 * 13 12 11 35 35 H 0.96997 * 119.99938 * 0.02562 * 16 14 13 36 36 H 1.09007 * 110.36687 * 25.74802 * 19 17 16 37 37 H 1.08999 * 110.36409 * 147.95150 * 19 17 16 38 38 H 1.07998 * 124.62437 * 163.39206 * 20 19 17 39 39 H 0.96710 * 116.99952 * 179.97438 * 24 22 21 40 40 H 1.08994 * 110.36402 * 257.76745 * 25 21 20 41 41 H 1.08996 * 110.36415 * 135.44378 * 25 21 20 42 42 H 1.09006 * 109.49148 * 58.59042 * 26 12 11 43 43 H 1.08997 * 109.49807 * 178.68064 * 26 12 11 44 44 H 1.09003 * 109.58851 * 246.15723 * 27 9 7 45 45 H 1.08999 * 109.58813 * 6.44442 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 3.1040 1.6963 -1.2125 5 1 1.2853 2.7465 -0.0006 6 1 3.1039 1.6964 1.2125 7 6 2.0102 -1.2022 0.0005 8 1 3.0551 -1.2225 -0.2715 9 7 1.3700 -2.3623 0.3462 10 6 0.2262 -2.3399 1.2681 11 6 0.4981 -3.3186 2.4150 12 6 0.8131 -4.7003 1.8373 13 7 1.0412 -5.6465 2.9322 14 6 0.8382 -6.9646 2.7371 15 8 0.4660 -7.3683 1.6522 16 7 1.0486 -7.8352 3.7442 17 6 0.8284 -9.2679 3.5320 18 1 1.0916 -9.5545 2.5138 19 6 -0.6318 -9.6574 3.8566 20 6 -0.6038 -10.0932 5.3033 21 6 0.6393 -10.3427 5.6950 22 6 1.0166 -10.7860 7.0443 23 8 0.1611 -10.9475 7.8922 24 8 2.3116 -11.0134 7.3415 25 6 1.6140 -10.1089 4.5641 26 6 2.0682 -4.6168 0.9657 27 6 1.8140 -3.6529 -0.1976 28 1 -0.4850 0.8401 -0.0004 29 1 -0.6769 -2.6410 0.7373 30 1 0.0991 -1.3341 1.6685 31 1 -0.3823 -3.3834 3.0543 32 1 1.3477 -2.9667 3.0003 33 1 -0.0271 -5.0409 1.2322 34 1 1.3384 -5.3245 3.7976 35 1 1.3458 -7.5132 4.6095 36 1 -1.2904 -8.7978 3.7320 37 1 -0.9563 -10.4787 3.2177 38 1 -1.4764 -10.1884 5.9325 39 1 2.5109 -11.3033 8.2423 40 1 1.9211 -11.0584 4.1256 41 1 2.4830 -9.5560 4.9205 42 1 2.9032 -4.2525 1.5643 43 1 2.3053 -5.6058 0.5736 44 1 1.0403 -4.0611 -0.8479 45 1 2.7332 -3.5130 -0.7664 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001608187675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:03 Heat of formation + Delta-G solvation = -108.675317 kcal Electronic energy + Delta-G solvation = -27061.358499 eV Core-core repulsion = 23078.418390 eV Total energy + Delta-G solvation = -3982.940109 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.58849 -41.02008 -39.58356 -38.64675 -37.06369 -35.92272 -34.75032 -33.71796 -31.76494 -31.14890 -29.88997 -29.15912 -26.81380 -24.53624 -24.02838 -23.73898 -22.22979 -21.52346 -21.01811 -19.85891 -19.38551 -18.89341 -18.56443 -17.95403 -17.53866 -16.87102 -16.66955 -16.34850 -15.96714 -15.59888 -15.34201 -15.23213 -14.94865 -14.74203 -14.43230 -14.14935 -13.92191 -13.73987 -13.71039 -13.18435 -12.97621 -12.89527 -12.78279 -12.59533 -12.55943 -12.52544 -12.26967 -12.21023 -12.01531 -11.84479 -11.68280 -11.53351 -11.35395 -11.18648 -10.53582 -10.27260 -10.16332 -9.72683 -8.69104 -7.86431 -5.32015 0.07076 1.49840 1.51361 1.58683 1.72996 1.91303 2.14651 2.22157 2.53292 3.26373 3.34683 3.46288 3.55902 3.69214 3.93783 4.04996 4.09895 4.15140 4.37314 4.38692 4.49227 4.56713 4.68288 4.73701 4.83558 4.84824 4.86417 4.92884 4.95076 5.07647 5.10435 5.19008 5.26288 5.33055 5.38596 5.49356 5.57198 5.61565 5.65520 5.66271 5.72221 6.08370 6.40564 6.97503 7.15970 7.17136 7.66944 7.85813 8.38686 9.20539 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.029027 B = 0.002127 C = 0.002094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 964.385304 B =13163.163507 C =13368.038065 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.936 5.936 2 C -0.050 4.050 3 Si 0.969 3.031 4 H -0.277 1.277 5 H -0.295 1.295 6 H -0.275 1.275 7 C -0.264 4.264 8 H 0.067 0.933 9 N -0.609 5.609 10 C 0.178 3.822 11 C -0.128 4.128 12 C 0.182 3.818 13 N -0.728 5.728 14 C 0.702 3.298 15 O -0.631 6.631 16 N -0.725 5.725 17 C 0.157 3.843 18 H 0.099 0.901 19 C -0.120 4.120 20 C -0.034 4.034 21 C -0.197 4.197 22 C 0.540 3.460 23 O -0.557 6.557 24 O -0.505 6.505 25 C -0.074 4.074 26 C -0.123 4.123 27 C 0.144 3.856 28 H 0.251 0.749 29 H -0.005 1.005 30 H 0.062 0.938 31 H 0.075 0.925 32 H 0.069 0.931 33 H 0.056 0.944 34 H 0.409 0.591 35 H 0.409 0.591 36 H 0.079 0.921 37 H 0.117 0.883 38 H 0.144 0.856 39 H 0.431 0.569 40 H 0.112 0.888 41 H 0.094 0.906 42 H 0.065 0.935 43 H 0.060 0.940 44 H 0.007 0.993 45 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.954 -22.506 15.276 27.486 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.582 5.582 2 C -0.246 4.246 3 Si 0.797 3.203 4 H -0.203 1.203 5 H -0.221 1.221 6 H -0.201 1.201 7 C -0.394 4.394 8 H 0.085 0.915 9 N -0.333 5.333 10 C 0.052 3.948 11 C -0.167 4.167 12 C 0.077 3.923 13 N -0.383 5.383 14 C 0.402 3.598 15 O -0.512 6.512 16 N -0.381 5.381 17 C 0.051 3.949 18 H 0.117 0.883 19 C -0.158 4.158 20 C -0.053 4.053 21 C -0.198 4.198 22 C 0.387 3.613 23 O -0.451 6.451 24 O -0.318 6.318 25 C -0.112 4.112 26 C -0.163 4.163 27 C 0.018 3.982 28 H 0.060 0.940 29 H 0.013 0.987 30 H 0.081 0.919 31 H 0.094 0.906 32 H 0.088 0.912 33 H 0.075 0.925 34 H 0.244 0.756 35 H 0.245 0.755 36 H 0.097 0.903 37 H 0.135 0.865 38 H 0.162 0.838 39 H 0.292 0.708 40 H 0.130 0.870 41 H 0.112 0.888 42 H 0.083 0.917 43 H 0.078 0.922 44 H 0.025 0.975 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 3.242 -22.658 14.103 26.885 hybrid contribution 0.295 1.152 1.127 1.639 sum 3.537 -21.506 15.230 26.589 Atomic orbital electron populations 1.70179 1.06679 1.26003 1.55298 1.25826 0.96055 1.01551 1.01151 0.85320 0.77524 0.79079 0.78373 1.20306 1.22117 1.20137 1.19481 0.92864 0.85871 1.41149 0.91503 1.44350 1.35958 1.02217 1.50775 1.20570 0.87729 0.97734 0.88764 1.22253 1.01852 0.93786 0.98859 1.20459 0.96932 0.87636 0.87291 1.45158 1.72649 1.04509 1.15944 1.16113 0.78065 0.81477 0.84110 1.90906 1.55350 1.78569 1.26407 1.45004 1.73082 1.06192 1.13816 1.21616 0.94192 0.78621 1.00424 0.88341 1.22027 0.98158 1.02714 0.92891 1.24329 0.96656 0.87921 0.96371 1.20924 0.97235 1.09633 0.91975 1.20686 0.80142 0.72522 0.87987 1.90919 1.52261 1.51122 1.50750 1.84584 1.26857 1.79642 1.40743 1.21399 0.97007 1.01345 0.91428 1.22174 0.97895 0.98540 0.97677 1.20973 0.97312 0.85941 0.93975 0.94027 0.98739 0.91916 0.90625 0.91229 0.92538 0.75556 0.75517 0.90293 0.86530 0.83804 0.70787 0.86962 0.88754 0.91677 0.92169 0.97506 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -55.10 11.20 21.65 0.24 -54.85 16 2 C -0.05 -2.80 4.92 84.86 0.42 -2.38 16 3 Si 0.97 44.35 29.59 68.60 2.03 46.38 16 4 H -0.28 -12.34 7.11 99.48 0.71 -11.64 16 5 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 6 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 7 C -0.26 -14.43 9.58 84.03 0.81 -13.62 16 8 H 0.07 3.56 7.88 -2.91 -0.02 3.53 16 9 N -0.61 -30.69 2.99 -699.10 -2.09 -32.78 16 10 C 0.18 8.47 5.30 86.36 0.46 8.93 16 11 C -0.13 -4.47 5.55 30.67 0.17 -4.30 16 12 C 0.18 6.05 2.41 45.02 0.11 6.16 16 13 N -0.73 -18.10 5.08 -457.69 -2.33 -20.42 16 14 C 0.70 18.24 8.53 179.05 1.53 19.77 16 15 O -0.63 -22.18 15.70 -4.00 -0.06 -22.24 16 16 N -0.72 -12.11 5.15 -452.67 -2.33 -14.44 16 17 C 0.16 2.24 3.46 46.07 0.16 2.40 16 18 H 0.10 1.70 7.63 -2.39 -0.02 1.68 16 19 C -0.12 -1.57 6.53 30.52 0.20 -1.37 16 20 C -0.03 -0.42 10.43 24.65 0.26 -0.17 16 21 C -0.20 -2.45 6.09 -18.62 -0.11 -2.57 16 22 C 0.54 8.10 8.31 70.10 0.58 8.68 16 23 O -0.56 -12.20 17.55 19.72 0.35 -11.85 16 24 O -0.51 -4.76 13.25 -57.07 -0.76 -5.51 16 25 C -0.07 -0.73 6.18 30.52 0.19 -0.54 16 26 C -0.12 -4.31 5.65 30.67 0.17 -4.14 16 27 C 0.14 6.22 6.52 86.36 0.56 6.79 16 28 H 0.25 14.30 8.31 -92.71 -0.77 13.53 16 29 H -0.01 -0.28 8.14 -2.39 -0.02 -0.30 16 30 H 0.06 3.33 6.06 -2.39 -0.01 3.32 16 31 H 0.08 2.32 8.14 -2.39 -0.02 2.30 16 32 H 0.07 2.32 8.14 -2.38 -0.02 2.30 16 33 H 0.06 2.20 7.58 -2.39 -0.02 2.19 16 34 H 0.41 7.49 8.62 -92.71 -0.80 6.69 16 35 H 0.41 4.74 8.63 -92.71 -0.80 3.94 16 36 H 0.08 1.31 8.09 -2.38 -0.02 1.29 16 37 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.14 1.74 8.03 -2.91 -0.02 1.72 16 39 H 0.43 0.55 9.11 -74.05 -0.67 -0.12 16 40 H 0.11 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.09 0.84 8.06 -2.39 -0.02 0.82 16 42 H 0.06 2.21 8.14 -2.38 -0.02 2.19 16 43 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 44 H 0.01 0.32 8.14 -2.39 -0.02 0.30 16 45 H 0.06 2.40 7.93 -2.39 -0.02 2.38 16 Total: -1.00 -75.50 372.36 -0.69 -76.19 By element: Atomic # 1 Polarization: 17.12 SS G_CDS: -1.23 Total: 15.88 kcal Atomic # 6 Polarization: 18.15 SS G_CDS: 5.50 Total: 23.65 kcal Atomic # 7 Polarization: -115.99 SS G_CDS: -6.51 Total: -122.49 kcal Atomic # 8 Polarization: -39.13 SS G_CDS: -0.47 Total: -39.61 kcal Atomic # 14 Polarization: 44.35 SS G_CDS: 2.03 Total: 46.38 kcal Total: -75.50 -0.69 -76.19 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.487 kcal (2) G-P(sol) polarization free energy of solvation -75.502 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.686 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.188 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.675 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds