Wall clock time and date at job start Tue Mar 31 2020 14:22:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31619 * 1 3 3 Si 1.86797 * 119.99988 * 2 1 4 4 H 1.48496 * 109.47135 * 359.97438 * 3 2 1 5 5 H 1.48503 * 109.47164 * 120.00107 * 3 2 1 6 6 H 1.48500 * 109.47104 * 240.00023 * 3 2 1 7 7 C 1.38814 * 120.00014 * 179.97438 * 2 1 3 8 8 H 1.08004 * 120.00011 * 162.77019 * 7 2 1 9 9 N 1.36935 * 120.00325 * 342.77528 * 7 2 1 10 10 C 1.46930 * 120.62754 * 332.16739 * 9 7 2 11 11 C 1.52761 * 109.00733 * 233.58605 * 10 9 7 12 12 C 1.53042 * 109.37887 * 305.58497 * 11 10 9 13 13 N 1.46507 * 109.44684 * 181.25506 * 12 11 10 14 14 C 1.34777 * 119.99942 * 84.93849 * 13 12 11 15 15 O 1.21587 * 119.99824 * 0.02562 * 14 13 12 16 16 N 1.34773 * 119.99822 * 179.97438 * 14 13 12 17 17 C 1.46503 * 119.99734 * 179.97438 * 16 14 13 18 18 H 1.08994 * 110.86861 * 325.70345 * 17 16 14 19 19 C 1.54581 * 110.97788 * 89.52658 * 17 16 14 20 20 C 1.51106 * 104.84689 * 143.14770 * 19 17 16 21 21 C 1.32714 * 110.74228 * 343.39364 * 20 19 17 22 22 C 1.46950 * 124.62734 * 180.02562 * 21 20 19 23 23 O 1.21538 * 120.00256 * 359.97438 * 22 21 20 24 24 O 1.34803 * 119.99793 * 179.97438 * 22 21 20 25 25 C 1.51170 * 110.75804 * 0.03104 * 21 20 19 26 26 C 1.53035 * 109.53837 * 61.24530 * 12 11 10 27 27 C 1.46921 * 120.63677 * 152.44702 * 9 7 2 28 28 H 0.97001 * 119.99718 * 359.97438 * 1 2 3 29 29 H 1.09001 * 109.58739 * 353.41759 * 10 9 7 30 30 H 1.08994 * 109.58811 * 113.84400 * 10 9 7 31 31 H 1.09004 * 109.56300 * 185.55602 * 11 10 9 32 32 H 1.09000 * 109.36393 * 65.49522 * 11 10 9 33 33 H 1.08999 * 109.46116 * 301.21596 * 12 11 10 34 34 H 0.96999 * 120.00281 * 264.94430 * 13 12 11 35 35 H 0.96999 * 120.00401 * 0.02562 * 16 14 13 36 36 H 1.09004 * 110.36240 * 261.98618 * 19 17 16 37 37 H 1.09001 * 110.36268 * 24.30071 * 19 17 16 38 38 H 1.07997 * 124.63130 * 163.38732 * 20 19 17 39 39 H 0.96702 * 116.99436 * 179.97438 * 24 22 21 40 40 H 1.09001 * 110.35801 * 257.73585 * 25 21 20 41 41 H 1.08996 * 110.40216 * 135.40006 * 25 21 20 42 42 H 1.08997 * 109.50027 * 178.68367 * 26 12 11 43 43 H 1.08997 * 109.52951 * 58.59638 * 26 12 11 44 44 H 1.08997 * 109.58597 * 246.16060 * 27 9 7 45 45 H 1.09008 * 109.58509 * 6.57586 * 27 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2502 1.6177 0.0000 4 1 1.2852 2.7464 -0.0006 5 1 3.1040 1.6964 1.2125 6 1 3.1039 1.6964 -1.2125 7 6 2.0103 -1.2022 0.0005 8 1 3.0540 -1.2233 -0.2765 9 7 1.3717 -2.3614 0.3522 10 6 0.2275 -2.3358 1.2735 11 6 0.4937 -3.3042 2.4246 12 6 0.8147 -4.6895 1.8587 13 7 1.0409 -5.6265 2.9620 14 6 -0.0043 -6.2471 3.5441 15 8 -1.1349 -6.0296 3.1533 16 7 0.2039 -7.1095 4.5586 17 6 -0.9324 -7.7836 5.1917 18 1 -1.8066 -7.1330 5.2141 19 6 -1.2527 -9.1169 4.4780 20 6 -1.6618 -10.0603 5.5852 21 6 -1.2819 -9.5909 6.7670 22 6 -1.5235 -10.2651 8.0501 23 8 -2.1097 -11.3295 8.0765 24 8 -1.0951 -9.7029 9.1980 25 6 -0.5666 -8.2681 6.6133 26 6 2.0733 -4.6092 0.9919 27 6 1.8215 -3.6549 -0.1797 28 1 -0.4850 0.8401 0.0004 29 1 0.0986 -1.3279 1.6682 30 1 -0.6749 -2.6412 0.7440 31 1 -0.3893 -3.3667 3.0606 32 1 1.3400 -2.9454 3.0103 33 1 -0.0220 -5.0371 1.2529 34 1 1.9430 -5.8003 3.2736 35 1 1.1059 -7.2833 4.8701 36 1 -2.0725 -8.9819 3.7724 37 1 -0.3681 -9.4946 3.9652 38 1 -2.1913 -10.9895 5.4353 39 1 -1.2777 -10.1836 10.0170 40 1 0.5110 -8.4072 6.7010 41 1 -0.9198 -7.5562 7.3592 42 1 2.3147 -5.6004 0.6082 43 1 2.9052 -4.2383 1.5907 44 1 1.0518 -4.0701 -0.8302 45 1 2.7441 -3.5172 -0.7437 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001608187676.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:22:07 Heat of formation + Delta-G solvation = -83.071715 kcal Electronic energy + Delta-G solvation = -26891.965029 eV Core-core repulsion = 22910.135176 eV Total energy + Delta-G solvation = -3981.829853 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.81736 -40.08362 -38.60661 -37.29412 -36.46018 -34.37044 -33.95108 -32.04293 -30.10290 -29.63632 -29.19382 -28.22734 -24.97038 -23.87176 -22.40913 -22.18747 -21.22218 -20.67754 -19.49556 -19.25983 -18.37435 -18.02769 -17.41390 -16.80814 -16.54358 -15.92504 -15.36175 -14.83249 -14.69704 -14.62257 -14.10945 -13.74769 -13.49199 -13.40831 -13.24531 -13.08143 -12.97122 -12.73967 -12.33386 -12.29248 -12.20543 -11.97091 -11.69741 -11.47582 -11.11200 -11.05058 -10.93085 -10.71166 -10.37841 -10.25348 -10.10931 -9.99485 -9.74299 -9.56603 -9.54912 -9.23911 -8.63289 -8.38650 -6.67819 -5.77267 -3.19968 0.64728 2.50273 2.63382 2.69993 3.31215 3.39012 3.45122 3.45896 4.07131 4.09881 4.34010 4.50337 4.68252 4.72767 4.82181 5.10098 5.22719 5.30310 5.39206 5.41304 5.46955 5.47790 5.65589 5.68968 5.80839 5.84573 5.93506 6.03033 6.09896 6.24730 6.36702 6.38976 6.46574 6.59628 6.66669 6.77465 6.89756 6.95717 7.09281 7.40862 7.46910 7.70155 7.80363 8.11267 8.46148 8.73265 9.22138 9.85638 10.42151 11.31273 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.032843 B = 0.002030 C = 0.001989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 852.345036 B =13791.275536 C =14076.445871 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.002 3.998 3 Si 0.903 3.097 4 H -0.291 1.291 5 H -0.284 1.284 6 H -0.283 1.283 7 C -0.255 4.255 8 H 0.065 0.935 9 N -0.592 5.592 10 C 0.173 3.827 11 C -0.146 4.146 12 C 0.169 3.831 13 N -0.739 5.739 14 C 0.702 3.298 15 O -0.586 6.586 16 N -0.744 5.744 17 C 0.164 3.836 18 H 0.107 0.893 19 C -0.126 4.126 20 C -0.037 4.037 21 C -0.186 4.186 22 C 0.536 3.464 23 O -0.520 6.520 24 O -0.511 6.511 25 C -0.086 4.086 26 C -0.139 4.139 27 C 0.149 3.851 28 H 0.255 0.745 29 H 0.089 0.911 30 H 0.020 0.980 31 H 0.053 0.947 32 H 0.053 0.947 33 H 0.081 0.919 34 H 0.390 0.610 35 H 0.395 0.605 36 H 0.095 0.905 37 H 0.097 0.903 38 H 0.145 0.855 39 H 0.413 0.587 40 H 0.086 0.914 41 H 0.088 0.912 42 H 0.054 0.946 43 H 0.062 0.938 44 H 0.021 0.979 45 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.378 -20.283 14.902 25.207 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.545 5.545 2 C -0.197 4.197 3 Si 0.733 3.267 4 H -0.217 1.217 5 H -0.211 1.211 6 H -0.209 1.209 7 C -0.384 4.384 8 H 0.083 0.917 9 N -0.315 5.315 10 C 0.047 3.953 11 C -0.187 4.187 12 C 0.065 3.935 13 N -0.392 5.392 14 C 0.402 3.598 15 O -0.463 6.463 16 N -0.400 5.400 17 C 0.057 3.943 18 H 0.125 0.875 19 C -0.164 4.164 20 C -0.056 4.056 21 C -0.187 4.187 22 C 0.382 3.618 23 O -0.410 6.410 24 O -0.322 6.322 25 C -0.124 4.124 26 C -0.179 4.179 27 C 0.021 3.979 28 H 0.065 0.935 29 H 0.107 0.893 30 H 0.038 0.962 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.100 0.900 34 H 0.223 0.777 35 H 0.229 0.771 36 H 0.113 0.887 37 H 0.115 0.885 38 H 0.162 0.838 39 H 0.271 0.729 40 H 0.104 0.896 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.081 0.919 44 H 0.038 0.962 45 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 0.135 -19.939 14.126 24.436 hybrid contribution 1.154 0.242 0.995 1.543 sum 1.289 -19.697 15.120 24.865 Atomic orbital electron populations 1.70032 1.05249 1.25654 1.53545 1.25056 0.95283 0.98442 1.00886 0.86371 0.78897 0.83406 0.78071 1.21650 1.21077 1.20901 1.19125 0.92609 0.84868 1.41844 0.91705 1.44088 1.35820 1.01345 1.50272 1.20676 0.88667 0.98237 0.87755 1.22505 1.00447 0.95231 1.00504 1.20918 0.98518 0.88259 0.85804 1.45542 1.07780 1.47400 1.38481 1.16004 0.85342 0.78704 0.79727 1.90942 1.21543 1.67941 1.65904 1.45108 1.09429 1.47768 1.37678 1.21504 0.90184 0.92624 0.89938 0.87539 1.22064 1.03285 0.93819 0.97231 1.24271 0.90477 0.97759 0.93117 1.20771 1.07660 0.99994 0.90277 1.20538 0.74675 0.82312 0.84301 1.90926 1.39697 1.22507 1.87872 1.84626 1.75367 1.54566 1.17643 1.21384 1.00598 0.93392 0.97003 1.22343 0.96744 0.99677 0.99100 1.20837 0.97963 0.86740 0.92324 0.93530 0.89299 0.96167 0.92783 0.92839 0.90043 0.77707 0.77088 0.88701 0.88479 0.83784 0.72859 0.89570 0.89365 0.92684 0.91923 0.96160 0.92362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.27 11.19 55.49 0.62 -25.65 16 2 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 3 Si 0.90 21.57 29.59 -169.99 -5.03 16.54 16 4 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 5 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 7 C -0.25 -6.91 9.58 -15.06 -0.14 -7.06 16 8 H 0.07 1.71 7.89 -52.48 -0.41 1.30 16 9 N -0.59 -14.67 3.00 -172.58 -0.52 -15.19 16 10 C 0.17 4.19 5.28 -3.93 -0.02 4.17 16 11 C -0.15 -2.89 5.63 -26.83 -0.15 -3.05 16 12 C 0.17 2.86 2.42 -67.89 -0.16 2.70 16 13 N -0.74 -9.76 5.08 -58.63 -0.30 -10.05 16 14 C 0.70 9.78 8.53 -86.92 -0.74 9.04 16 15 O -0.59 -10.84 15.70 5.29 0.08 -10.76 16 16 N -0.74 -6.89 5.17 -57.06 -0.30 -7.18 16 17 C 0.16 1.42 3.46 -66.27 -0.23 1.19 16 18 H 0.11 1.14 7.63 -51.93 -0.40 0.75 16 19 C -0.13 -0.95 6.53 -26.85 -0.18 -1.13 16 20 C -0.04 -0.27 10.44 -35.99 -0.38 -0.64 16 21 C -0.19 -1.43 6.09 -102.75 -0.63 -2.05 16 22 C 0.54 4.64 8.31 34.26 0.28 4.92 16 23 O -0.52 -5.97 17.55 -19.29 -0.34 -6.31 16 24 O -0.51 -3.16 13.25 -40.77 -0.54 -3.70 16 25 C -0.09 -0.58 6.29 -26.83 -0.17 -0.75 16 26 C -0.14 -2.23 5.55 -26.62 -0.15 -2.38 16 27 C 0.15 3.01 6.52 -3.72 -0.02 2.98 16 28 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 29 H 0.09 2.41 6.04 -51.93 -0.31 2.10 16 30 H 0.02 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.05 1.09 8.14 -51.93 -0.42 0.67 16 32 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 33 H 0.08 1.58 7.58 -51.93 -0.39 1.18 16 34 H 0.39 3.91 8.62 -40.82 -0.35 3.56 16 35 H 0.40 2.48 8.41 -40.82 -0.34 2.14 16 36 H 0.09 0.80 8.14 -51.93 -0.42 0.37 16 37 H 0.10 0.68 8.08 -51.93 -0.42 0.26 16 38 H 0.14 0.92 8.03 -52.49 -0.42 0.50 16 39 H 0.41 0.78 9.11 45.56 0.42 1.20 16 40 H 0.09 0.47 7.79 -51.93 -0.40 0.07 16 41 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 43 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.06 1.14 7.93 -51.92 -0.41 0.72 16 LS Contribution 371.94 15.07 5.61 5.61 Total: -1.00 -35.02 371.94 -9.45 -44.47 By element: Atomic # 1 Polarization: 10.28 SS G_CDS: -5.97 Total: 4.30 kcal Atomic # 6 Polarization: 10.69 SS G_CDS: -2.77 Total: 7.92 kcal Atomic # 7 Polarization: -57.58 SS G_CDS: -0.49 Total: -58.07 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.80 Total: -20.77 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.03 Total: 16.54 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -35.02 -9.45 -44.47 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001608187676.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.603 kcal (2) G-P(sol) polarization free energy of solvation -35.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.621 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.468 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds