Wall clock time and date at job start Tue Mar 31 2020 13:50:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46904 * 110.99750 * 2 1 4 4 C 1.50697 * 109.47371 * 293.95240 * 3 2 1 5 5 H 1.07998 * 119.99914 * 0.02562 * 4 3 2 6 6 C 1.37874 * 119.99986 * 179.97438 * 4 3 2 7 7 N 1.31506 * 120.00208 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99799 * 179.97438 * 6 4 3 9 9 H 1.48491 * 109.47237 * 0.02562 * 8 6 4 10 10 H 1.48501 * 109.46637 * 120.00382 * 8 6 4 11 11 H 1.48496 * 109.47108 * 240.00136 * 8 6 4 12 12 C 1.46894 * 111.00175 * 123.95453 * 2 1 3 13 13 C 1.53001 * 109.47184 * 66.04468 * 12 2 1 14 14 H 1.08998 * 109.47430 * 305.00363 * 13 12 2 15 15 O 1.42906 * 109.46583 * 65.00413 * 13 12 2 16 16 C 1.52997 * 109.47242 * 185.00015 * 13 12 2 17 17 O 1.42905 * 109.47264 * 175.00315 * 16 13 12 18 18 C 1.35897 * 117.00093 * 180.02562 * 17 16 13 19 19 C 1.38737 * 120.05547 * 359.72645 * 18 17 16 20 20 C 1.38146 * 119.93882 * 179.69816 * 19 18 17 21 21 C 1.38268 * 120.05855 * 0.60059 * 20 19 18 22 22 C 1.50701 * 119.94438 * 179.69891 * 21 20 19 23 23 C 1.50700 * 109.47019 * 269.97606 * 22 21 20 24 24 O 1.20823 * 120.00325 * 359.97438 * 23 22 21 25 25 O 1.34228 * 119.99565 * 179.97438 * 23 22 21 26 26 C 1.38265 * 120.10736 * 359.67435 * 21 20 19 27 27 C 1.38141 * 120.06229 * 0.02578 * 26 21 20 28 28 H 1.08996 * 109.47707 * 296.04418 * 1 2 3 29 29 H 1.09004 * 109.47170 * 56.04939 * 1 2 3 30 30 H 1.08999 * 109.47049 * 176.03996 * 1 2 3 31 31 H 1.09005 * 109.46974 * 53.95666 * 3 2 1 32 32 H 1.08999 * 109.47023 * 173.95435 * 3 2 1 33 33 H 0.97000 * 120.00125 * 179.97438 * 7 6 4 34 34 H 1.09005 * 109.47417 * 306.04908 * 12 2 1 35 35 H 1.09000 * 109.47614 * 186.05143 * 12 2 1 36 36 H 0.96697 * 113.99941 * 60.00263 * 15 13 12 37 37 H 1.09001 * 109.47289 * 55.00149 * 16 13 12 38 38 H 1.09004 * 109.47261 * 295.00405 * 16 13 12 39 39 H 1.08000 * 120.02659 * 359.97438 * 19 18 17 40 40 H 1.08001 * 119.97033 * 180.27263 * 20 19 18 41 41 H 1.09001 * 109.47018 * 29.97541 * 22 21 20 42 42 H 1.08996 * 109.46847 * 149.97179 * 22 21 20 43 43 H 0.96699 * 116.99439 * 179.97438 * 25 23 22 44 44 H 1.08005 * 119.96603 * 180.02562 * 26 21 20 45 45 H 1.07997 * 120.03246 * 179.97438 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0739 1.5116 -2.0484 6 6 2.0267 3.3495 -1.5284 7 7 2.7118 4.0019 -0.6149 8 14 1.5829 4.1868 -3.1382 9 1 0.8158 3.2443 -3.9914 10 1 0.7550 5.3877 -2.8596 11 1 2.8248 4.5945 -3.8429 12 6 1.9954 -0.7659 1.1375 13 6 1.6315 -2.2426 0.9703 14 1 0.5532 -2.3389 0.8432 15 8 2.2957 -2.7695 -0.1801 16 6 2.0700 -3.0199 2.2130 17 8 1.6273 -4.3746 2.1084 18 6 1.9365 -5.2060 3.1379 19 6 2.6561 -4.7292 4.2240 20 6 2.9637 -5.5748 5.2722 21 6 2.5657 -6.8984 5.2339 22 6 2.9085 -7.8204 6.3756 23 6 4.2395 -8.4753 6.1102 24 8 4.8472 -8.2201 5.0976 25 8 4.7499 -9.3422 6.9988 26 6 1.8534 -7.3774 4.1500 27 6 1.5379 -6.5344 3.1021 28 1 -0.3634 0.4512 0.9232 29 1 -0.3634 0.5739 -0.8525 30 1 -0.3633 -1.0252 -0.0710 31 1 1.5610 1.9274 0.8310 32 1 3.0796 1.3445 0.1082 33 1 2.9863 4.9181 -0.7769 34 1 1.5611 -0.3873 2.0628 35 1 3.0797 -0.6610 1.1757 36 1 3.2602 -2.7166 -0.1360 37 1 1.6330 -2.5624 3.1007 38 1 3.1570 -2.9978 2.2906 39 1 2.9717 -3.6967 4.2520 40 1 3.5200 -5.2030 6.1200 41 1 2.9636 -7.2474 7.3013 42 1 2.1385 -8.5863 6.4678 43 1 5.6062 -9.7372 6.7847 44 1 1.5433 -8.4116 4.1226 45 1 0.9818 -6.9091 2.2555 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610115884.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:45 Heat of formation + Delta-G solvation = -177.952322 kcal Electronic energy + Delta-G solvation = -26127.005402 eV Core-core repulsion = 22108.768465 eV Total energy + Delta-G solvation = -4018.236936 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.50341 -40.93191 -39.50917 -38.39041 -37.04810 -36.87665 -34.64392 -33.40235 -32.12301 -31.60534 -29.32130 -28.54457 -27.67389 -25.89388 -23.99252 -23.55114 -22.65601 -21.89501 -21.55972 -19.20211 -19.03157 -18.54251 -17.85135 -17.61639 -17.42783 -16.95838 -16.80828 -16.32372 -16.20262 -16.12185 -15.87330 -15.48867 -15.08828 -14.97599 -14.42873 -14.37048 -14.13115 -13.98132 -13.78982 -13.33111 -13.25126 -13.07140 -12.83102 -12.63229 -12.61713 -12.56914 -12.47079 -12.42939 -12.08213 -11.94613 -11.90030 -11.59663 -11.56139 -11.38545 -10.89597 -10.63290 -9.96584 -9.11663 -8.99794 -8.22024 -6.31438 0.34116 0.39105 1.28430 1.40280 1.41309 1.55018 2.03735 2.21580 2.40428 2.89578 3.10598 3.24688 3.52154 3.66196 3.76491 3.84199 3.91371 3.96945 4.06756 4.24823 4.27935 4.32869 4.38977 4.48557 4.51440 4.61754 4.66295 4.68372 4.70407 4.77566 4.97145 5.06439 5.06964 5.15926 5.27238 5.29341 5.37571 5.56073 5.63950 5.68004 5.81805 6.03232 6.28477 6.41108 6.60064 6.84056 6.87510 7.05119 7.38262 8.89070 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.034693 B = 0.001776 C = 0.001744 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 806.880871 B =15759.522657 C =16046.911402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.542 5.542 3 C 0.207 3.793 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.933 5.933 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.029 3.971 13 C 0.127 3.873 14 H 0.099 0.901 15 O -0.559 6.559 16 C 0.035 3.965 17 O -0.322 6.322 18 C 0.114 3.886 19 C -0.220 4.220 20 C -0.069 4.069 21 C -0.128 4.128 22 C -0.063 4.063 23 C 0.480 3.520 24 O -0.553 6.553 25 O -0.514 6.514 26 C -0.066 4.066 27 C -0.169 4.169 28 H 0.016 0.984 29 H 0.056 0.944 30 H 0.074 0.926 31 H -0.034 1.034 32 H 0.007 0.993 33 H 0.265 0.735 34 H 0.044 0.956 35 H 0.077 0.923 36 H 0.382 0.618 37 H 0.086 0.914 38 H 0.079 0.921 39 H 0.137 0.863 40 H 0.144 0.856 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.426 0.574 44 H 0.151 0.849 45 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.004 -26.537 18.886 32.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.266 5.266 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.078 0.922 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.100 4.100 13 C 0.067 3.933 14 H 0.117 0.883 15 O -0.365 6.365 16 C -0.041 4.041 17 O -0.236 6.236 18 C 0.069 3.931 19 C -0.238 4.238 20 C -0.087 4.087 21 C -0.129 4.129 22 C -0.099 4.099 23 C 0.325 3.675 24 O -0.444 6.444 25 O -0.328 6.328 26 C -0.084 4.084 27 C -0.188 4.188 28 H 0.034 0.966 29 H 0.075 0.925 30 H 0.093 0.907 31 H -0.017 1.017 32 H 0.025 0.975 33 H 0.073 0.927 34 H 0.062 0.938 35 H 0.095 0.905 36 H 0.231 0.769 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.155 0.845 40 H 0.162 0.838 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.287 0.713 44 H 0.169 0.831 45 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -0.690 -26.507 17.941 32.015 hybrid contribution 1.065 1.388 0.010 1.750 sum 0.375 -25.119 17.951 30.876 Atomic orbital electron populations 1.22262 0.87736 1.01086 0.99998 1.61885 1.08110 1.15142 1.41468 1.19413 0.93834 0.83582 0.95056 1.21500 1.34798 0.97476 1.02449 0.92151 1.25887 0.95034 0.98029 1.00667 1.70073 1.39372 1.11897 1.36065 0.85336 0.78081 0.78166 0.79045 1.18987 1.20288 1.20369 1.22685 1.00966 0.93620 0.92725 1.21779 0.98335 0.89340 0.83885 0.88300 1.86597 1.24386 1.83860 1.41653 1.23571 1.00650 0.80008 0.99869 1.86103 1.74542 1.21390 1.41548 1.19397 0.95173 0.91066 0.87470 1.21444 1.04824 1.01994 0.95588 1.21096 0.96720 0.92946 0.97957 1.19443 1.02008 0.94377 0.97051 1.20301 0.91488 0.99232 0.98913 1.23872 0.88148 0.75819 0.79706 1.90775 1.62324 1.61758 1.29533 1.84495 1.42348 1.55929 1.50027 1.21096 0.95858 0.99921 0.91549 1.20637 1.05548 0.91043 1.01543 0.96558 0.92498 0.90728 1.01680 0.97478 0.92657 0.93828 0.90472 0.76912 0.89621 0.90305 0.84479 0.83794 0.84239 0.83997 0.71300 0.83092 0.84893 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.46 9.14 127.69 1.17 2.63 16 2 N -0.54 -23.44 4.70 -927.05 -4.36 -27.80 16 3 C 0.21 11.03 4.72 85.56 0.40 11.43 16 4 C -0.52 -30.08 8.46 25.60 0.22 -29.86 16 5 H 0.06 3.45 7.12 -2.91 -0.02 3.43 16 6 C 0.00 0.10 5.46 84.66 0.46 0.56 16 7 N -0.93 -56.09 13.29 21.44 0.28 -55.81 16 8 Si 0.97 44.77 29.54 68.60 2.03 46.79 16 9 H -0.27 -11.92 7.11 99.48 0.71 -11.21 16 10 H -0.28 -12.39 7.11 99.48 0.71 -11.68 16 11 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 12 C 0.03 0.96 4.59 86.30 0.40 1.36 16 13 C 0.13 3.62 3.20 30.59 0.10 3.72 16 14 H 0.10 2.97 6.34 -2.39 -0.02 2.95 16 15 O -0.56 -17.87 13.25 -144.35 -1.91 -19.79 16 16 C 0.03 0.80 4.37 71.98 0.31 1.12 16 17 O -0.32 -8.61 10.10 -87.76 -0.89 -9.49 16 18 C 0.11 2.72 6.69 22.51 0.15 2.87 16 19 C -0.22 -4.46 9.04 22.37 0.20 -4.26 16 20 C -0.07 -1.15 9.69 22.25 0.22 -0.94 16 21 C -0.13 -1.91 4.38 -19.85 -0.09 -1.99 16 22 C -0.06 -0.48 5.94 29.10 0.17 -0.30 16 23 C 0.48 6.10 8.32 71.24 0.59 6.70 16 24 O -0.55 -12.32 16.79 21.97 0.37 -11.95 16 25 O -0.51 -3.89 13.42 -51.39 -0.69 -4.58 16 26 C -0.07 -1.09 9.69 22.25 0.22 -0.87 16 27 C -0.17 -3.59 9.99 22.37 0.22 -3.37 16 28 H 0.02 0.60 8.14 -2.39 -0.02 0.58 16 29 H 0.06 2.43 6.76 -2.38 -0.02 2.42 16 30 H 0.07 2.50 6.37 -2.39 -0.02 2.49 16 31 H -0.03 -1.97 8.12 -2.38 -0.02 -1.99 16 32 H 0.01 0.40 7.93 -2.39 -0.02 0.39 16 33 H 0.26 14.89 8.31 -92.71 -0.77 14.12 16 34 H 0.04 1.36 8.12 -2.38 -0.02 1.34 16 35 H 0.08 2.50 7.93 -2.39 -0.02 2.48 16 36 H 0.38 9.78 9.04 -74.06 -0.67 9.11 16 37 H 0.09 1.69 7.67 -2.39 -0.02 1.67 16 38 H 0.08 1.61 7.65 -2.38 -0.02 1.59 16 39 H 0.14 2.43 6.30 -2.91 -0.02 2.41 16 40 H 0.14 1.67 8.06 -2.91 -0.02 1.65 16 41 H 0.14 0.39 8.08 -2.39 -0.02 0.37 16 42 H 0.14 0.33 8.08 -2.39 -0.02 0.31 16 43 H 0.43 0.39 9.10 -74.06 -0.67 -0.29 16 44 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 45 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 Total: -1.00 -78.56 381.36 -0.74 -79.30 By element: Atomic # 1 Polarization: 14.85 SS G_CDS: -0.32 Total: 14.53 kcal Atomic # 6 Polarization: -15.95 SS G_CDS: 4.75 Total: -11.20 kcal Atomic # 7 Polarization: -79.53 SS G_CDS: -4.07 Total: -83.61 kcal Atomic # 8 Polarization: -42.70 SS G_CDS: -3.12 Total: -45.82 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.79 kcal Total: -78.56 -0.74 -79.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610115884.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.649 kcal (2) G-P(sol) polarization free energy of solvation -78.561 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.952 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds