Wall clock time and date at job start Tue Mar 31 2020 13:50:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00144 * 2 1 4 4 C 1.50706 * 109.46818 * 66.04570 * 3 2 1 5 5 H 1.08001 * 119.99743 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99922 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99995 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99894 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47015 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47087 * 120.00250 * 8 6 4 11 11 H 1.48504 * 109.47176 * 240.00327 * 8 6 4 12 12 C 1.46903 * 110.99745 * 236.04896 * 2 1 3 13 13 C 1.52999 * 109.47586 * 293.95090 * 12 2 1 14 14 H 1.09003 * 109.46660 * 60.00182 * 13 12 2 15 15 O 1.42900 * 109.47034 * 300.00900 * 13 12 2 16 16 C 1.52991 * 109.47437 * 180.02562 * 13 12 2 17 17 O 1.42903 * 109.47089 * 185.00153 * 16 13 12 18 18 C 1.35904 * 116.99686 * 180.02562 * 17 16 13 19 19 C 1.38734 * 120.05067 * 180.02562 * 18 17 16 20 20 C 1.38145 * 119.94237 * 179.74240 * 19 18 17 21 21 C 1.38264 * 120.05437 * 0.25588 * 20 19 18 22 22 C 1.50707 * 119.94209 * 180.02562 * 21 20 19 23 23 C 1.50696 * 109.47009 * 90.00391 * 22 21 20 24 24 O 1.20830 * 119.99972 * 359.97438 * 23 22 21 25 25 O 1.34232 * 120.00385 * 179.97438 * 23 22 21 26 26 C 1.38268 * 120.11230 * 359.97438 * 21 20 19 27 27 C 1.38137 * 120.05792 * 359.97438 * 26 21 20 28 28 H 1.08999 * 109.47102 * 183.94963 * 1 2 3 29 29 H 1.08990 * 109.47253 * 303.95021 * 1 2 3 30 30 H 1.09005 * 109.46703 * 63.95450 * 1 2 3 31 31 H 1.08999 * 109.47652 * 186.04663 * 3 2 1 32 32 H 1.08998 * 109.47739 * 306.05024 * 3 2 1 33 33 H 0.97005 * 119.99782 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46973 * 173.95463 * 12 2 1 35 35 H 1.08999 * 109.47294 * 53.96050 * 12 2 1 36 36 H 0.96702 * 113.99934 * 299.98774 * 15 13 12 37 37 H 1.09002 * 109.47283 * 64.99985 * 16 13 12 38 38 H 1.09000 * 109.47400 * 305.00146 * 16 13 12 39 39 H 1.08002 * 120.03267 * 0.02580 * 19 18 17 40 40 H 1.07999 * 119.97317 * 180.23157 * 20 19 18 41 41 H 1.09006 * 109.46828 * 210.00172 * 22 21 20 42 42 H 1.08989 * 109.47354 * 330.00060 * 22 21 20 43 43 H 0.96694 * 117.00187 * 179.97438 * 25 23 22 44 44 H 1.08007 * 119.96697 * 180.02562 * 26 21 20 45 45 H 1.08000 * 120.03391 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0746 1.5111 2.0488 6 6 2.0277 3.3490 1.5290 7 7 2.7129 4.0015 0.6155 8 14 1.5838 4.1863 3.1388 9 1 0.8166 3.2436 3.9919 10 1 2.8258 4.5928 3.8442 11 1 0.7568 5.3879 2.8603 12 6 1.9954 -0.7659 -1.1377 13 6 1.6315 -2.2426 -0.9705 14 1 0.5472 -2.3475 -0.9325 15 8 2.2009 -2.7391 0.2424 16 6 2.1803 -3.0404 -2.1550 17 8 1.7421 -4.3972 -2.0595 18 6 2.1454 -5.2463 -3.0410 19 6 1.7563 -6.5776 -3.0110 20 6 2.1631 -7.4376 -4.0127 21 6 2.9617 -6.9737 -5.0417 22 6 3.4036 -7.9139 -6.1334 23 6 2.3911 -7.8988 -7.2495 24 8 1.4110 -7.1971 -7.1666 25 8 2.5779 -8.6651 -8.3357 26 6 3.3547 -5.6483 -5.0712 27 6 2.9498 -4.7842 -4.0725 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3633 0.5739 0.8524 30 1 -0.3633 0.4513 -0.9234 31 1 3.0798 1.3444 -0.1082 32 1 1.5612 1.9274 -0.8308 33 1 2.9881 4.9174 0.7779 34 1 3.0797 -0.6611 -1.1757 35 1 1.5612 -0.3871 -2.0629 36 1 3.1652 -2.6772 0.2785 37 1 3.2698 -3.0085 -2.1411 38 1 1.8161 -2.6057 -3.0859 39 1 1.1322 -6.9404 -2.2078 40 1 1.8575 -8.4732 -3.9919 41 1 4.3725 -7.5948 -6.5176 42 1 3.4866 -8.9236 -5.7318 43 1 1.9012 -8.6221 -9.0250 44 1 3.9782 -5.2883 -5.8763 45 1 3.2566 -3.7489 -4.0962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610115885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:49 Heat of formation + Delta-G solvation = -150.507307 kcal Electronic energy + Delta-G solvation = -26127.618266 eV Core-core repulsion = 22110.571435 eV Total energy + Delta-G solvation = -4017.046831 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -40.85947 -40.17512 -38.42279 -37.30664 -36.43479 -35.41023 -32.75720 -32.54405 -31.36204 -30.41183 -27.95649 -27.19913 -26.36636 -24.33205 -23.10851 -22.71712 -21.39557 -20.94669 -20.27092 -18.50922 -18.32068 -17.00031 -16.88401 -16.51938 -16.45153 -16.13895 -15.63859 -15.33333 -14.98904 -14.82561 -14.60721 -14.25071 -13.75206 -13.70061 -13.64061 -13.45491 -13.21767 -12.68058 -12.58460 -12.43984 -11.97923 -11.94391 -11.90238 -11.43673 -11.30830 -11.14899 -11.04830 -10.92728 -10.89497 -10.76493 -10.66996 -10.31649 -10.03360 -9.71396 -9.24806 -9.17023 -8.45900 -8.34449 -7.26091 -6.04790 -4.05728 1.05856 1.11344 1.80994 2.66862 2.97378 3.30755 3.38174 3.44019 3.56890 4.19355 4.38163 4.41872 4.54699 4.60914 4.64666 4.81086 4.92198 4.95035 4.96083 5.05810 5.10220 5.21968 5.31285 5.35579 5.38593 5.47591 5.54129 5.74755 5.95773 5.97377 6.07394 6.12310 6.13709 6.22512 6.23793 6.32265 6.50852 6.75368 7.20913 7.26230 7.28863 7.48285 7.77587 7.92967 8.05850 8.15576 8.51142 9.02591 9.58726 11.06225 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.035026 B = 0.001776 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.224871 B =15757.833964 C =16063.071272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.528 5.528 3 C 0.192 3.808 4 C -0.505 4.505 5 H 0.065 0.935 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.899 3.101 9 H -0.271 1.271 10 H -0.284 1.284 11 H -0.285 1.285 12 C 0.027 3.973 13 C 0.116 3.884 14 H 0.105 0.895 15 O -0.537 6.537 16 C 0.026 3.974 17 O -0.301 6.301 18 C 0.142 3.858 19 C -0.152 4.152 20 C -0.062 4.062 21 C -0.130 4.130 22 C -0.064 4.064 23 C 0.474 3.526 24 O -0.503 6.503 25 O -0.521 6.521 26 C -0.060 4.060 27 C -0.210 4.210 28 H 0.048 0.952 29 H 0.076 0.924 30 H 0.010 0.990 31 H 0.029 0.971 32 H -0.010 1.010 33 H 0.260 0.740 34 H 0.073 0.927 35 H 0.032 0.968 36 H 0.370 0.630 37 H 0.067 0.933 38 H 0.070 0.930 39 H 0.133 0.867 40 H 0.127 0.873 41 H 0.114 0.886 42 H 0.114 0.886 43 H 0.410 0.590 44 H 0.123 0.877 45 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.653 -25.632 -16.260 30.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.252 5.252 3 C 0.067 3.933 4 C -0.544 4.544 5 H 0.083 0.917 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.210 1.210 11 H -0.211 1.211 12 C -0.102 4.102 13 C 0.056 3.944 14 H 0.123 0.877 15 O -0.340 6.340 16 C -0.050 4.050 17 O -0.214 6.214 18 C 0.096 3.904 19 C -0.171 4.171 20 C -0.080 4.080 21 C -0.130 4.130 22 C -0.101 4.101 23 C 0.316 3.684 24 O -0.390 6.390 25 O -0.334 6.334 26 C -0.078 4.078 27 C -0.229 4.229 28 H 0.067 0.933 29 H 0.095 0.905 30 H 0.028 0.972 31 H 0.047 0.953 32 H 0.008 0.992 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.050 0.950 36 H 0.217 0.783 37 H 0.085 0.915 38 H 0.088 0.912 39 H 0.151 0.849 40 H 0.145 0.855 41 H 0.132 0.868 42 H 0.132 0.868 43 H 0.269 0.731 44 H 0.141 0.859 45 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 2.167 -25.628 -15.199 29.875 hybrid contribution -0.171 1.391 -0.911 1.671 sum 1.996 -24.238 -16.110 29.171 Atomic orbital electron populations 1.22280 0.88763 0.99782 1.00570 1.62002 1.07053 1.17486 1.38659 1.19768 0.95311 0.81405 0.96799 1.21206 1.34689 0.96862 1.01640 0.91655 1.25000 0.95299 0.97352 0.97078 1.69970 1.38520 1.11434 1.34074 0.86421 0.78162 0.79264 0.83472 1.19584 1.21009 1.21137 1.22622 1.00811 0.92797 0.94007 1.21942 0.99362 0.90763 0.82328 0.87719 1.86636 1.25110 1.84800 1.37480 1.23746 0.99843 0.80211 1.01162 1.86174 1.70251 1.20090 1.44844 1.19155 0.92961 0.90483 0.87767 1.20412 1.04538 0.90791 1.01356 1.20748 0.95189 0.99327 0.92762 1.19066 1.02924 0.94293 0.96735 1.20166 0.97381 1.02053 0.90538 1.23562 0.86461 0.76072 0.82350 1.90779 1.30076 1.39137 1.79024 1.84527 1.54337 1.64065 1.30440 1.20739 0.97751 0.92181 0.97136 1.21258 1.03652 1.01058 0.96888 0.93341 0.90491 0.97193 0.95289 0.99175 0.92993 0.90830 0.94961 0.78303 0.91482 0.91191 0.84896 0.85503 0.86839 0.86792 0.73095 0.85900 0.85184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.68 9.14 60.07 0.55 1.23 16 2 N -0.53 -11.30 4.62 -244.37 -1.13 -12.43 16 3 C 0.19 4.97 4.72 -4.97 -0.02 4.94 16 4 C -0.51 -14.24 8.46 -34.44 -0.29 -14.53 16 5 H 0.07 1.84 7.12 -52.49 -0.37 1.47 16 6 C 0.05 1.53 5.46 -17.82 -0.10 1.43 16 7 N -0.90 -26.67 13.29 55.43 0.74 -25.94 16 8 Si 0.90 21.72 29.54 -169.99 -5.02 16.70 16 9 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 10 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 11 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 12 C 0.03 0.45 4.62 -3.82 -0.02 0.44 16 13 C 0.12 1.69 3.12 -26.74 -0.08 1.61 16 14 H 0.11 1.61 6.55 -51.93 -0.34 1.27 16 15 O -0.54 -8.54 13.17 -40.11 -0.53 -9.07 16 16 C 0.03 0.32 4.37 37.15 0.16 0.48 16 17 O -0.30 -4.04 10.10 -24.32 -0.25 -4.28 16 18 C 0.14 1.72 6.69 -39.22 -0.26 1.45 16 19 C -0.15 -1.64 9.99 -39.43 -0.39 -2.03 16 20 C -0.06 -0.56 9.69 -39.61 -0.38 -0.94 16 21 C -0.13 -1.10 4.38 -104.60 -0.46 -1.56 16 22 C -0.06 -0.35 5.94 -29.03 -0.17 -0.52 16 23 C 0.47 3.55 8.32 36.00 0.30 3.85 16 24 O -0.50 -5.86 16.79 -18.75 -0.31 -6.18 16 25 O -0.52 -2.66 13.42 -39.26 -0.53 -3.19 16 26 C -0.06 -0.55 9.69 -39.61 -0.38 -0.94 16 27 C -0.21 -2.22 9.04 -39.44 -0.36 -2.58 16 28 H 0.05 0.85 6.47 -51.93 -0.34 0.51 16 29 H 0.08 1.64 6.76 -51.93 -0.35 1.29 16 30 H 0.01 0.19 8.14 -51.93 -0.42 -0.24 16 31 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 32 H -0.01 -0.26 8.12 -51.93 -0.42 -0.68 16 33 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 34 H 0.07 1.18 7.93 -51.93 -0.41 0.77 16 35 H 0.03 0.52 8.12 -51.93 -0.42 0.10 16 36 H 0.37 4.71 9.05 45.56 0.41 5.12 16 37 H 0.07 0.69 7.65 -51.93 -0.40 0.30 16 38 H 0.07 0.76 7.67 -51.93 -0.40 0.36 16 39 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.13 0.82 8.06 -52.49 -0.42 0.39 16 41 H 0.11 0.39 8.09 -51.93 -0.42 -0.03 16 42 H 0.11 0.37 8.08 -51.94 -0.42 -0.05 16 43 H 0.41 0.62 9.10 45.56 0.41 1.04 16 44 H 0.12 0.87 8.06 -52.48 -0.42 0.44 16 45 H 0.13 1.22 6.30 -52.49 -0.33 0.89 16 LS Contribution 381.45 15.07 5.75 5.75 Total: -1.00 -35.80 381.45 -8.23 -44.03 By element: Atomic # 1 Polarization: 7.31 SS G_CDS: -5.03 Total: 2.28 kcal Atomic # 6 Polarization: -5.76 SS G_CDS: -1.91 Total: -7.67 kcal Atomic # 7 Polarization: -37.97 SS G_CDS: -0.39 Total: -38.36 kcal Atomic # 8 Polarization: -21.11 SS G_CDS: -1.62 Total: -22.72 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -35.80 -8.23 -44.03 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610115885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -106.476 kcal (2) G-P(sol) polarization free energy of solvation -35.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -142.280 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.227 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.031 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.507 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds