Wall clock time and date at job start Tue Mar 31 2020 13:50:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46896 * 111.00144 * 2 1 4 4 C 1.50706 * 109.46818 * 66.04570 * 3 2 1 5 5 H 1.08001 * 119.99743 * 0.02562 * 4 3 2 6 6 C 1.37875 * 119.99922 * 179.97438 * 4 3 2 7 7 N 1.31515 * 119.99995 * 0.02562 * 6 4 3 8 8 Si 1.86802 * 119.99894 * 180.02562 * 6 4 3 9 9 H 1.48499 * 109.47015 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47087 * 120.00250 * 8 6 4 11 11 H 1.48504 * 109.47176 * 240.00327 * 8 6 4 12 12 C 1.46903 * 110.99745 * 236.04896 * 2 1 3 13 13 C 1.52999 * 109.47586 * 293.95090 * 12 2 1 14 14 H 1.09003 * 109.46660 * 60.00182 * 13 12 2 15 15 O 1.42900 * 109.47034 * 300.00900 * 13 12 2 16 16 C 1.52991 * 109.47437 * 180.02562 * 13 12 2 17 17 O 1.42903 * 109.47089 * 185.00153 * 16 13 12 18 18 C 1.35904 * 116.99686 * 180.02562 * 17 16 13 19 19 C 1.38734 * 120.05067 * 180.02562 * 18 17 16 20 20 C 1.38145 * 119.94237 * 179.74240 * 19 18 17 21 21 C 1.38264 * 120.05437 * 0.25588 * 20 19 18 22 22 C 1.50707 * 119.94209 * 180.02562 * 21 20 19 23 23 C 1.50696 * 109.47009 * 90.00391 * 22 21 20 24 24 O 1.20830 * 119.99972 * 359.97438 * 23 22 21 25 25 O 1.34232 * 120.00385 * 179.97438 * 23 22 21 26 26 C 1.38268 * 120.11230 * 359.97438 * 21 20 19 27 27 C 1.38137 * 120.05792 * 359.97438 * 26 21 20 28 28 H 1.08999 * 109.47102 * 183.94963 * 1 2 3 29 29 H 1.08990 * 109.47253 * 303.95021 * 1 2 3 30 30 H 1.09005 * 109.46703 * 63.95450 * 1 2 3 31 31 H 1.08999 * 109.47652 * 186.04663 * 3 2 1 32 32 H 1.08998 * 109.47739 * 306.05024 * 3 2 1 33 33 H 0.97005 * 119.99782 * 180.02562 * 7 6 4 34 34 H 1.09003 * 109.46973 * 173.95463 * 12 2 1 35 35 H 1.08999 * 109.47294 * 53.96050 * 12 2 1 36 36 H 0.96702 * 113.99934 * 299.98774 * 15 13 12 37 37 H 1.09002 * 109.47283 * 64.99985 * 16 13 12 38 38 H 1.09000 * 109.47400 * 305.00146 * 16 13 12 39 39 H 1.08002 * 120.03267 * 0.02580 * 19 18 17 40 40 H 1.07999 * 119.97317 * 180.23157 * 20 19 18 41 41 H 1.09006 * 109.46828 * 210.00172 * 22 21 20 42 42 H 1.08989 * 109.47354 * 330.00060 * 22 21 20 43 43 H 0.96694 * 117.00187 * 179.97438 * 25 23 22 44 44 H 1.08007 * 119.96697 * 180.02562 * 26 21 20 45 45 H 1.08000 * 120.03391 * 180.02562 * 27 26 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6369 2.0470 1.2985 5 1 1.0746 1.5111 2.0488 6 6 2.0277 3.3490 1.5290 7 7 2.7129 4.0015 0.6155 8 14 1.5838 4.1863 3.1388 9 1 0.8166 3.2436 3.9919 10 1 2.8258 4.5928 3.8442 11 1 0.7568 5.3879 2.8603 12 6 1.9954 -0.7659 -1.1377 13 6 1.6315 -2.2426 -0.9705 14 1 0.5472 -2.3475 -0.9325 15 8 2.2009 -2.7391 0.2424 16 6 2.1803 -3.0404 -2.1550 17 8 1.7421 -4.3972 -2.0595 18 6 2.1454 -5.2463 -3.0410 19 6 1.7563 -6.5776 -3.0110 20 6 2.1631 -7.4376 -4.0127 21 6 2.9617 -6.9737 -5.0417 22 6 3.4036 -7.9139 -6.1334 23 6 2.3911 -7.8988 -7.2495 24 8 1.4110 -7.1971 -7.1666 25 8 2.5779 -8.6651 -8.3357 26 6 3.3547 -5.6483 -5.0712 27 6 2.9498 -4.7842 -4.0725 28 1 -0.3633 -1.0252 0.0708 29 1 -0.3633 0.5739 0.8524 30 1 -0.3633 0.4513 -0.9234 31 1 3.0798 1.3444 -0.1082 32 1 1.5612 1.9274 -0.8308 33 1 2.9881 4.9174 0.7779 34 1 3.0797 -0.6611 -1.1757 35 1 1.5612 -0.3871 -2.0629 36 1 3.1652 -2.6772 0.2785 37 1 3.2698 -3.0085 -2.1411 38 1 1.8161 -2.6057 -3.0859 39 1 1.1322 -6.9404 -2.2078 40 1 1.8575 -8.4732 -3.9919 41 1 4.3725 -7.5948 -6.5176 42 1 3.4866 -8.9236 -5.7318 43 1 1.9012 -8.6221 -9.0250 44 1 3.9782 -5.2883 -5.8763 45 1 3.2566 -3.7489 -4.0962 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610115885.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:50:48 Heat of formation + Delta-G solvation = -177.900700 kcal Electronic energy + Delta-G solvation = -26128.806133 eV Core-core repulsion = 22110.571435 eV Total energy + Delta-G solvation = -4018.234698 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.50323 -40.93071 -39.50501 -38.39080 -37.04164 -36.85798 -34.63418 -33.40140 -32.12302 -31.60573 -29.32496 -28.54439 -27.66364 -25.89545 -23.99157 -23.55150 -22.65664 -21.87834 -21.56056 -19.20280 -19.03446 -18.53991 -17.84498 -17.58811 -17.44662 -16.95985 -16.80975 -16.31721 -16.19079 -16.12520 -15.85493 -15.48269 -15.10387 -14.97727 -14.42799 -14.35922 -14.16804 -13.96045 -13.75853 -13.36577 -13.22739 -13.08255 -12.82782 -12.63914 -12.61414 -12.57022 -12.47233 -12.41058 -12.08721 -11.94076 -11.89794 -11.59133 -11.56134 -11.38161 -10.88393 -10.63082 -9.96545 -9.11624 -9.00356 -8.21870 -6.31250 0.34215 0.39202 1.28134 1.40513 1.41413 1.55197 2.03941 2.21370 2.40595 2.89606 3.10746 3.24541 3.53846 3.66237 3.76656 3.83882 3.91639 3.97392 4.07109 4.24460 4.28594 4.32975 4.39071 4.48646 4.51307 4.61786 4.66766 4.68504 4.70016 4.77649 4.97191 5.06089 5.06531 5.16032 5.27286 5.29167 5.37650 5.56127 5.64080 5.67758 5.81866 6.03193 6.28249 6.41187 6.59879 6.84526 6.89711 7.04885 7.38440 8.89220 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.035026 B = 0.001776 C = 0.001743 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.224871 B =15757.833964 C =16063.071272 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.038 3.962 2 N -0.539 5.539 3 C 0.207 3.793 4 C -0.524 4.524 5 H 0.060 0.940 6 C 0.002 3.998 7 N -0.934 5.934 8 Si 0.969 3.031 9 H -0.266 1.266 10 H -0.277 1.277 11 H -0.278 1.278 12 C 0.028 3.972 13 C 0.128 3.872 14 H 0.096 0.904 15 O -0.556 6.556 16 C 0.035 3.965 17 O -0.322 6.322 18 C 0.114 3.886 19 C -0.169 4.169 20 C -0.066 4.066 21 C -0.128 4.128 22 C -0.063 4.063 23 C 0.481 3.519 24 O -0.554 6.554 25 O -0.514 6.514 26 C -0.069 4.069 27 C -0.220 4.220 28 H 0.073 0.927 29 H 0.056 0.944 30 H 0.014 0.986 31 H 0.009 0.991 32 H -0.036 1.036 33 H 0.265 0.735 34 H 0.079 0.921 35 H 0.041 0.959 36 H 0.383 0.617 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.133 0.867 40 H 0.151 0.849 41 H 0.140 0.860 42 H 0.142 0.858 43 H 0.425 0.575 44 H 0.144 0.856 45 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.285 -27.360 -16.999 32.378 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.263 5.263 3 C 0.081 3.919 4 C -0.562 4.562 5 H 0.079 0.921 6 C -0.196 4.196 7 N -0.574 5.574 8 Si 0.794 3.206 9 H -0.190 1.190 10 H -0.203 1.203 11 H -0.204 1.204 12 C -0.101 4.101 13 C 0.068 3.932 14 H 0.114 0.886 15 O -0.362 6.362 16 C -0.041 4.041 17 O -0.236 6.236 18 C 0.069 3.931 19 C -0.188 4.188 20 C -0.084 4.084 21 C -0.129 4.129 22 C -0.099 4.099 23 C 0.325 3.675 24 O -0.444 6.444 25 O -0.328 6.328 26 C -0.087 4.087 27 C -0.239 4.239 28 H 0.092 0.908 29 H 0.075 0.925 30 H 0.032 0.968 31 H 0.027 0.973 32 H -0.018 1.018 33 H 0.073 0.927 34 H 0.097 0.903 35 H 0.059 0.941 36 H 0.232 0.768 37 H 0.102 0.898 38 H 0.099 0.901 39 H 0.151 0.849 40 H 0.169 0.831 41 H 0.158 0.842 42 H 0.160 0.840 43 H 0.287 0.713 44 H 0.162 0.838 45 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges 2.811 -27.401 -15.969 31.839 hybrid contribution -0.340 1.792 -0.807 1.995 sum 2.471 -25.609 -16.776 30.714 Atomic orbital electron populations 1.22245 0.87851 1.01028 0.99874 1.61888 1.08004 1.15088 1.41333 1.19421 0.93898 0.83591 0.95016 1.21501 1.34778 0.97496 1.02409 0.92142 1.25890 0.95035 0.98024 1.00675 1.70080 1.39376 1.11910 1.36053 0.85336 0.78096 0.78141 0.79048 1.18984 1.20297 1.20374 1.22687 1.01061 0.93679 0.92665 1.21733 0.98940 0.89464 0.83108 0.88600 1.86591 1.26442 1.84854 1.38342 1.23564 1.00645 0.79838 1.00037 1.86104 1.71063 1.20500 1.45910 1.19398 0.94533 0.90822 0.88346 1.20637 1.05059 0.90871 1.02210 1.21096 0.94779 1.00289 0.92254 1.19444 1.01696 0.94640 0.97105 1.20302 0.97645 1.02891 0.89100 1.23876 0.85808 0.75029 0.82815 1.90775 1.32214 1.41348 1.80081 1.84495 1.54859 1.63092 1.30347 1.21094 0.97872 0.92509 0.97240 1.21440 1.03619 1.01811 0.96982 0.90830 0.92487 0.96768 0.97320 1.01835 0.92665 0.90254 0.94113 0.76849 0.89835 0.90119 0.84891 0.83088 0.84237 0.83996 0.71304 0.83797 0.84481 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.52 9.14 127.69 1.17 2.69 16 2 N -0.54 -23.31 4.62 -927.05 -4.28 -27.59 16 3 C 0.21 11.00 4.72 85.56 0.40 11.40 16 4 C -0.52 -30.01 8.46 25.60 0.22 -29.80 16 5 H 0.06 3.45 7.12 -2.91 -0.02 3.43 16 6 C 0.00 0.10 5.46 84.65 0.46 0.56 16 7 N -0.93 -56.05 13.29 21.45 0.28 -55.77 16 8 Si 0.97 44.71 29.54 68.60 2.03 46.74 16 9 H -0.27 -11.90 7.11 99.48 0.71 -11.20 16 10 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 11 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 12 C 0.03 0.93 4.62 86.30 0.40 1.33 16 13 C 0.13 3.64 3.12 30.59 0.10 3.74 16 14 H 0.10 2.90 6.55 -2.39 -0.02 2.89 16 15 O -0.56 -17.48 13.17 -144.32 -1.90 -19.38 16 16 C 0.03 0.81 4.37 71.98 0.31 1.12 16 17 O -0.32 -8.61 10.10 -87.81 -0.89 -9.50 16 18 C 0.11 2.73 6.69 22.51 0.15 2.88 16 19 C -0.17 -3.59 9.99 22.37 0.22 -3.37 16 20 C -0.07 -1.09 9.69 22.25 0.22 -0.87 16 21 C -0.13 -1.91 4.38 -19.85 -0.09 -2.00 16 22 C -0.06 -0.48 5.94 29.10 0.17 -0.31 16 23 C 0.48 6.09 8.32 71.23 0.59 6.68 16 24 O -0.55 -12.28 16.79 21.95 0.37 -11.91 16 25 O -0.51 -3.88 13.42 -51.44 -0.69 -4.57 16 26 C -0.07 -1.16 9.69 22.25 0.22 -0.94 16 27 C -0.22 -4.47 9.04 22.36 0.20 -4.27 16 28 H 0.07 2.53 6.47 -2.39 -0.02 2.51 16 29 H 0.06 2.46 6.76 -2.39 -0.02 2.45 16 30 H 0.01 0.53 8.14 -2.38 -0.02 0.52 16 31 H 0.01 0.49 7.93 -2.39 -0.02 0.47 16 32 H -0.04 -2.06 8.12 -2.39 -0.02 -2.08 16 33 H 0.26 14.88 8.31 -92.70 -0.77 14.11 16 34 H 0.08 2.53 7.93 -2.39 -0.02 2.51 16 35 H 0.04 1.30 8.12 -2.39 -0.02 1.28 16 36 H 0.38 9.54 9.05 -74.06 -0.67 8.87 16 37 H 0.08 1.63 7.65 -2.39 -0.02 1.61 16 38 H 0.08 1.67 7.67 -2.39 -0.02 1.65 16 39 H 0.13 2.65 8.06 -2.91 -0.02 2.63 16 40 H 0.15 1.60 8.06 -2.91 -0.02 1.58 16 41 H 0.14 0.39 8.09 -2.38 -0.02 0.37 16 42 H 0.14 0.34 8.08 -2.39 -0.02 0.32 16 43 H 0.43 0.37 9.10 -74.06 -0.67 -0.30 16 44 H 0.14 1.68 8.06 -2.91 -0.02 1.66 16 45 H 0.14 2.43 6.30 -2.91 -0.02 2.42 16 Total: -1.00 -78.26 381.45 -0.66 -78.92 By element: Atomic # 1 Polarization: 14.54 SS G_CDS: -0.32 Total: 14.22 kcal Atomic # 6 Polarization: -15.90 SS G_CDS: 4.74 Total: -11.15 kcal Atomic # 7 Polarization: -79.36 SS G_CDS: -4.00 Total: -83.36 kcal Atomic # 8 Polarization: -42.26 SS G_CDS: -3.11 Total: -45.37 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Total: -78.26 -0.66 -78.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610115885.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -98.982 kcal (2) G-P(sol) polarization free energy of solvation -78.260 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -177.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.658 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -177.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds