Wall clock time and date at job start Tue Mar 31 2020 14:29:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38112 * 126.29969 * 2 1 4 4 C 1.47365 * 126.41769 * 359.97438 * 3 2 1 5 5 O 1.21626 * 119.99978 * 313.85099 * 4 3 2 6 6 N 1.34772 * 119.99820 * 133.57572 * 4 3 2 7 7 C 1.36984 * 120.00112 * 184.81681 * 6 4 3 8 8 H 1.08000 * 119.99770 * 8.48588 * 7 6 4 9 9 C 1.38975 * 119.99975 * 188.48621 * 7 6 4 10 10 N 1.31408 * 120.00338 * 26.22418 * 9 7 6 11 11 Si 1.86802 * 119.99969 * 206.22251 * 9 7 6 12 12 H 1.48502 * 109.46977 * 94.99050 * 11 9 7 13 13 H 1.48498 * 109.47299 * 214.99206 * 11 9 7 14 14 H 1.48500 * 109.47204 * 334.99610 * 11 9 7 15 15 C 1.46509 * 120.00110 * 4.81134 * 6 4 3 16 16 C 1.50698 * 109.46850 * 90.34824 * 15 6 4 17 17 O 1.20832 * 120.00059 * 0.02562 * 16 15 6 18 18 O 1.34225 * 119.99863 * 180.02562 * 16 15 6 19 19 C 1.41312 * 107.15898 * 180.25098 * 3 2 1 20 20 N 1.30445 * 108.02905 * 359.61240 * 19 3 2 21 21 N 1.34283 * 126.30012 * 180.02562 * 2 1 3 22 22 C 1.46500 * 125.75097 * 359.94505 * 21 2 1 23 23 C 1.53001 * 109.47367 * 89.99930 * 22 21 2 24 24 C 1.52997 * 109.47266 * 180.02562 * 23 22 21 25 25 C 1.52998 * 109.47103 * 64.99494 * 24 23 22 26 26 C 1.52996 * 109.47438 * 184.99969 * 24 23 22 27 27 H 1.08996 * 109.47352 * 89.97886 * 1 2 3 28 28 H 1.09002 * 109.46950 * 209.97978 * 1 2 3 29 29 H 1.09001 * 109.47260 * 329.97292 * 1 2 3 30 30 H 0.97001 * 120.00638 * 180.02562 * 10 9 7 31 31 H 1.08995 * 109.47373 * 210.34773 * 15 6 4 32 32 H 1.08995 * 109.47097 * 330.34890 * 15 6 4 33 33 H 0.96708 * 116.99774 * 180.02562 * 18 16 15 34 34 H 1.08006 * 125.98586 * 179.77294 * 19 3 2 35 35 H 1.09002 * 109.47014 * 209.99801 * 22 21 2 36 36 H 1.09003 * 109.47232 * 329.99684 * 22 21 2 37 37 H 1.09002 * 109.46949 * 299.99911 * 23 22 21 38 38 H 1.09003 * 109.47145 * 59.99701 * 23 22 21 39 39 H 1.09004 * 109.46911 * 305.00050 * 24 23 22 40 40 H 1.09004 * 109.46784 * 60.00478 * 25 24 23 41 41 H 1.09008 * 109.46855 * 180.02562 * 25 24 23 42 42 H 1.08994 * 109.47396 * 299.99883 * 25 24 23 43 43 H 1.09004 * 109.46898 * 59.99418 * 26 24 23 44 44 H 1.08999 * 109.47888 * 179.97438 * 26 24 23 45 45 H 1.09004 * 109.47135 * 299.99943 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1131 0.0000 4 6 1.8868 2.5202 -0.0005 5 8 1.0096 2.8839 -0.7605 6 7 2.4545 3.4028 0.8450 7 6 1.9811 4.6864 0.9147 8 1 1.0716 4.9553 0.3982 9 6 2.6713 5.6426 1.6501 10 7 3.9653 5.5165 1.8415 11 14 1.7596 7.1071 2.3666 12 1 1.3790 6.8141 3.7718 13 1 2.6388 8.3033 2.3311 14 1 0.5360 7.3681 1.5667 15 6 3.5780 2.9896 1.6898 16 6 4.8734 3.2466 0.9639 17 8 4.8596 3.7263 -0.1451 18 8 6.0424 2.9427 1.5492 19 6 3.6596 0.6497 -0.0059 20 7 3.6343 -0.6544 -0.0008 21 7 2.3019 -1.0822 -0.0005 22 6 1.8505 -2.4759 0.0000 23 6 1.6922 -2.9613 -1.4423 24 6 1.2201 -4.4166 -1.4417 25 6 -0.1804 -4.4982 -0.8310 26 6 1.1813 -4.9409 -2.8785 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3634 0.8897 0.5143 30 1 4.4469 6.1837 2.3551 31 1 3.5629 3.5593 2.6188 32 1 3.4920 1.9264 1.9141 33 1 6.8468 3.1260 1.0446 34 1 4.5457 1.2673 -0.0109 35 1 2.5856 -3.0958 0.5134 36 1 0.8922 -2.5473 0.5147 37 1 0.9570 -2.3415 -1.9556 38 1 2.6504 -2.8900 -1.9569 39 1 1.9091 -5.0219 -0.8526 40 1 -0.8694 -3.8930 -1.4202 41 1 -0.5165 -5.5352 -0.8302 42 1 -0.1528 -4.1249 0.1926 43 1 2.1791 -4.8826 -3.3135 44 1 0.8454 -5.9778 -2.8782 45 1 0.4923 -4.3356 -3.4677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610405858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:07 Heat of formation + Delta-G solvation = -49.156291 kcal Electronic energy + Delta-G solvation = -28465.179228 eV Core-core repulsion = 24484.820057 eV Total energy + Delta-G solvation = -3980.359170 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.10794 -39.24486 -37.86336 -37.15885 -35.17104 -34.40582 -33.33604 -31.79203 -31.55401 -28.78618 -27.62117 -27.49217 -27.03658 -24.88979 -23.91225 -21.68607 -21.00810 -20.35358 -19.99084 -18.46471 -17.09476 -17.00075 -16.62422 -15.91319 -15.70965 -15.41606 -15.04217 -14.76776 -14.57810 -14.24010 -13.98582 -13.84903 -13.67067 -13.36123 -12.90780 -12.75619 -12.66629 -12.51506 -12.44844 -12.10816 -11.88314 -11.72551 -11.64657 -11.59741 -11.49884 -11.20862 -11.00993 -10.92265 -10.89522 -10.43315 -10.40187 -10.31447 -10.27055 -9.56379 -9.01144 -8.98243 -8.59080 -7.98086 -7.93178 -6.46572 -3.80187 2.02603 2.61467 2.80549 3.19222 3.26389 3.32532 3.52186 3.88587 4.08075 4.33922 4.44461 4.46154 4.58136 4.67184 4.84256 4.93801 5.04537 5.13959 5.16887 5.24749 5.28822 5.32961 5.35930 5.49965 5.55599 5.67139 5.68475 5.75504 5.87353 5.89627 5.96950 6.00145 6.03727 6.06902 6.13860 6.34486 6.54245 6.64353 6.85454 7.23887 7.53789 7.58594 7.95957 8.03149 8.41251 9.09485 9.11998 9.35733 9.92442 10.63045 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020776 B = 0.003415 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.373902 B = 8197.548965 C = 9071.693538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.123 3.877 3 C -0.255 4.255 4 C 0.530 3.470 5 O -0.576 6.576 6 N -0.424 5.424 7 C -0.301 4.301 8 H 0.112 0.888 9 C 0.029 3.971 10 N -0.877 5.877 11 Si 0.928 3.072 12 H -0.277 1.277 13 H -0.286 1.286 14 H -0.268 1.268 15 C 0.145 3.855 16 C 0.490 3.510 17 O -0.502 6.502 18 O -0.535 6.535 19 C 0.074 3.926 20 N -0.304 5.304 21 N -0.367 5.367 22 C 0.132 3.868 23 C -0.133 4.133 24 C -0.093 4.093 25 C -0.153 4.153 26 C -0.147 4.147 27 H 0.083 0.917 28 H 0.064 0.936 29 H 0.092 0.908 30 H 0.271 0.729 31 H 0.124 0.876 32 H 0.080 0.920 33 H 0.391 0.609 34 H 0.177 0.823 35 H 0.093 0.907 36 H 0.093 0.907 37 H 0.071 0.929 38 H 0.073 0.927 39 H 0.073 0.927 40 H 0.058 0.942 41 H 0.056 0.944 42 H 0.056 0.944 43 H 0.055 0.945 44 H 0.055 0.945 45 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.039 -18.179 0.517 18.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.007 4.007 3 C -0.269 4.269 4 C 0.319 3.681 5 O -0.460 6.460 6 N -0.142 5.142 7 C -0.428 4.428 8 H 0.130 0.870 9 C -0.174 4.174 10 N -0.517 5.517 11 Si 0.754 3.246 12 H -0.203 1.203 13 H -0.212 1.212 14 H -0.192 1.192 15 C 0.019 3.981 16 C 0.330 3.670 17 O -0.387 6.387 18 O -0.346 6.346 19 C -0.112 4.112 20 N -0.123 5.123 21 N -0.148 5.148 22 C 0.011 3.989 23 C -0.172 4.172 24 C -0.112 4.112 25 C -0.210 4.210 26 C -0.204 4.204 27 H 0.101 0.899 28 H 0.083 0.917 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.142 0.858 32 H 0.098 0.902 33 H 0.248 0.752 34 H 0.193 0.807 35 H 0.112 0.888 36 H 0.111 0.889 37 H 0.089 0.911 38 H 0.092 0.908 39 H 0.091 0.909 40 H 0.077 0.923 41 H 0.075 0.925 42 H 0.075 0.925 43 H 0.074 0.926 44 H 0.074 0.926 45 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -3.050 -18.997 0.151 19.241 hybrid contribution 0.248 1.806 -0.008 1.823 sum -2.801 -17.191 0.143 17.418 Atomic orbital electron populations 1.20429 0.86809 1.03434 1.03659 1.21315 0.94461 0.86269 0.98683 1.20362 0.92373 0.94817 1.19390 1.16920 0.85725 0.83580 0.81913 1.90599 1.35049 1.79666 1.40705 1.43366 1.26504 1.10492 1.33838 1.19773 1.08133 0.84817 1.30119 0.87035 1.25190 0.94769 0.99109 0.98308 1.69804 1.05977 1.37089 1.38819 0.85879 0.79539 0.79848 0.79312 1.20336 1.21176 1.19242 1.20778 0.81889 0.99645 0.95831 1.23771 0.84997 0.73389 0.84803 1.90632 1.87116 1.39482 1.21510 1.84543 1.17132 1.80210 1.52697 1.24014 0.97494 0.91625 0.98111 1.77057 0.96178 1.13115 1.25998 1.48313 1.03919 1.05464 1.57121 1.21767 1.00834 0.77970 0.98373 1.22084 1.02900 0.96175 0.96022 1.21055 0.97448 0.95324 0.97363 1.21948 0.96338 1.01917 1.00826 1.21825 1.02024 1.00802 0.95797 0.89863 0.91715 0.88973 0.91822 0.85806 0.90191 0.75226 0.80666 0.88838 0.88901 0.91054 0.90808 0.90868 0.92326 0.92536 0.92462 0.92591 0.92566 0.92527 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.19 9.73 36.00 0.35 -0.84 16 2 C 0.12 2.13 7.01 -81.57 -0.57 1.56 16 3 C -0.25 -5.41 5.05 -105.06 -0.53 -5.94 16 4 C 0.53 13.46 7.16 -12.55 -0.09 13.37 16 5 O -0.58 -16.21 16.48 5.25 0.09 -16.12 16 6 N -0.42 -10.96 2.11 -117.33 -0.25 -11.21 16 7 C -0.30 -8.35 9.40 -14.98 -0.14 -8.49 16 8 H 0.11 3.23 7.34 -52.49 -0.39 2.85 16 9 C 0.03 0.75 4.86 -17.46 -0.08 0.67 16 10 N -0.88 -23.05 8.99 55.50 0.50 -22.55 16 11 Si 0.93 20.45 29.63 -169.99 -5.04 15.41 16 12 H -0.28 -5.91 7.11 56.52 0.40 -5.51 16 13 H -0.29 -6.32 7.11 56.52 0.40 -5.92 16 14 H -0.27 -5.95 7.11 56.52 0.40 -5.54 16 15 C 0.15 3.31 4.81 -5.19 -0.02 3.29 16 16 C 0.49 11.21 3.91 36.00 0.14 11.35 16 17 O -0.50 -13.40 16.70 -18.75 -0.31 -13.72 16 18 O -0.53 -9.97 13.42 -39.24 -0.53 -10.49 16 19 C 0.07 1.48 9.80 -16.97 -0.17 1.31 16 20 N -0.30 -5.49 12.50 30.87 0.39 -5.10 16 21 N -0.37 -5.67 3.58 -56.58 -0.20 -5.88 16 22 C 0.13 1.38 5.97 -4.04 -0.02 1.36 16 23 C -0.13 -1.27 5.01 -26.73 -0.13 -1.41 16 24 C -0.09 -0.66 2.92 -90.62 -0.26 -0.93 16 25 C -0.15 -0.96 8.95 37.16 0.33 -0.63 16 26 C -0.15 -1.02 9.19 37.16 0.34 -0.68 16 27 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 28 H 0.06 0.66 7.05 -51.93 -0.37 0.29 16 29 H 0.09 1.44 7.96 -51.93 -0.41 1.03 16 30 H 0.27 6.79 8.31 -40.82 -0.34 6.45 16 31 H 0.12 2.89 6.37 -51.93 -0.33 2.56 16 32 H 0.08 1.62 5.81 -51.93 -0.30 1.32 16 33 H 0.39 5.63 9.10 45.56 0.41 6.05 16 34 H 0.18 3.56 5.25 -52.48 -0.28 3.28 16 35 H 0.09 0.90 8.14 -51.93 -0.42 0.47 16 36 H 0.09 0.78 5.44 -51.93 -0.28 0.49 16 37 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.07 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 40 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 41 H 0.06 0.32 8.14 -51.92 -0.42 -0.11 16 42 H 0.06 0.33 6.56 -51.93 -0.34 -0.01 16 43 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 45 H 0.06 0.41 8.14 -51.93 -0.42 -0.02 16 LS Contribution 369.12 15.07 5.56 5.56 Total: -1.00 -34.80 369.12 -6.30 -41.10 By element: Atomic # 1 Polarization: 14.64 SS G_CDS: -5.64 Total: 9.00 kcal Atomic # 6 Polarization: 14.86 SS G_CDS: -0.87 Total: 13.99 kcal Atomic # 7 Polarization: -45.17 SS G_CDS: 0.43 Total: -44.73 kcal Atomic # 8 Polarization: -39.58 SS G_CDS: -0.75 Total: -40.34 kcal Atomic # 14 Polarization: 20.45 SS G_CDS: -5.04 Total: 15.41 kcal Total LS contribution 5.56 Total: 5.56 kcal Total: -34.80 -6.30 -41.10 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610405858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.053 kcal (2) G-P(sol) polarization free energy of solvation -34.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.853 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.103 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds