Wall clock time and date at job start Tue Mar 31 2020 14:29:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38112 * 126.29969 * 2 1 4 4 C 1.47365 * 126.41769 * 359.97438 * 3 2 1 5 5 O 1.21626 * 119.99978 * 313.85099 * 4 3 2 6 6 N 1.34772 * 119.99820 * 133.57572 * 4 3 2 7 7 C 1.36984 * 120.00112 * 184.81681 * 6 4 3 8 8 H 1.08000 * 119.99770 * 8.48588 * 7 6 4 9 9 C 1.38975 * 119.99975 * 188.48621 * 7 6 4 10 10 N 1.31408 * 120.00338 * 26.22418 * 9 7 6 11 11 Si 1.86802 * 119.99969 * 206.22251 * 9 7 6 12 12 H 1.48502 * 109.46977 * 94.99050 * 11 9 7 13 13 H 1.48498 * 109.47299 * 214.99206 * 11 9 7 14 14 H 1.48500 * 109.47204 * 334.99610 * 11 9 7 15 15 C 1.46509 * 120.00110 * 4.81134 * 6 4 3 16 16 C 1.50698 * 109.46850 * 90.34824 * 15 6 4 17 17 O 1.20832 * 120.00059 * 0.02562 * 16 15 6 18 18 O 1.34225 * 119.99863 * 180.02562 * 16 15 6 19 19 C 1.41312 * 107.15898 * 180.25098 * 3 2 1 20 20 N 1.30445 * 108.02905 * 359.61240 * 19 3 2 21 21 N 1.34283 * 126.30012 * 180.02562 * 2 1 3 22 22 C 1.46500 * 125.75097 * 359.94505 * 21 2 1 23 23 C 1.53001 * 109.47367 * 89.99930 * 22 21 2 24 24 C 1.52997 * 109.47266 * 180.02562 * 23 22 21 25 25 C 1.52998 * 109.47103 * 64.99494 * 24 23 22 26 26 C 1.52996 * 109.47438 * 184.99969 * 24 23 22 27 27 H 1.08996 * 109.47352 * 89.97886 * 1 2 3 28 28 H 1.09002 * 109.46950 * 209.97978 * 1 2 3 29 29 H 1.09001 * 109.47260 * 329.97292 * 1 2 3 30 30 H 0.97001 * 120.00638 * 180.02562 * 10 9 7 31 31 H 1.08995 * 109.47373 * 210.34773 * 15 6 4 32 32 H 1.08995 * 109.47097 * 330.34890 * 15 6 4 33 33 H 0.96708 * 116.99774 * 180.02562 * 18 16 15 34 34 H 1.08006 * 125.98586 * 179.77294 * 19 3 2 35 35 H 1.09002 * 109.47014 * 209.99801 * 22 21 2 36 36 H 1.09003 * 109.47232 * 329.99684 * 22 21 2 37 37 H 1.09002 * 109.46949 * 299.99911 * 23 22 21 38 38 H 1.09003 * 109.47145 * 59.99701 * 23 22 21 39 39 H 1.09004 * 109.46911 * 305.00050 * 24 23 22 40 40 H 1.09004 * 109.46784 * 60.00478 * 25 24 23 41 41 H 1.09008 * 109.46855 * 180.02562 * 25 24 23 42 42 H 1.08994 * 109.47396 * 299.99883 * 25 24 23 43 43 H 1.09004 * 109.46898 * 59.99418 * 26 24 23 44 44 H 1.08999 * 109.47888 * 179.97438 * 26 24 23 45 45 H 1.09004 * 109.47135 * 299.99943 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3246 1.1131 0.0000 4 6 1.8868 2.5202 -0.0005 5 8 1.0096 2.8839 -0.7605 6 7 2.4545 3.4028 0.8450 7 6 1.9811 4.6864 0.9147 8 1 1.0716 4.9553 0.3982 9 6 2.6713 5.6426 1.6501 10 7 3.9653 5.5165 1.8415 11 14 1.7596 7.1071 2.3666 12 1 1.3790 6.8141 3.7718 13 1 2.6388 8.3033 2.3311 14 1 0.5360 7.3681 1.5667 15 6 3.5780 2.9896 1.6898 16 6 4.8734 3.2466 0.9639 17 8 4.8596 3.7263 -0.1451 18 8 6.0424 2.9427 1.5492 19 6 3.6596 0.6497 -0.0059 20 7 3.6343 -0.6544 -0.0008 21 7 2.3019 -1.0822 -0.0005 22 6 1.8505 -2.4759 0.0000 23 6 1.6922 -2.9613 -1.4423 24 6 1.2201 -4.4166 -1.4417 25 6 -0.1804 -4.4982 -0.8310 26 6 1.1813 -4.9409 -2.8785 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3633 -0.8902 0.5135 29 1 -0.3634 0.8897 0.5143 30 1 4.4469 6.1837 2.3551 31 1 3.5629 3.5593 2.6188 32 1 3.4920 1.9264 1.9141 33 1 6.8468 3.1260 1.0446 34 1 4.5457 1.2673 -0.0109 35 1 2.5856 -3.0958 0.5134 36 1 0.8922 -2.5473 0.5147 37 1 0.9570 -2.3415 -1.9556 38 1 2.6504 -2.8900 -1.9569 39 1 1.9091 -5.0219 -0.8526 40 1 -0.8694 -3.8930 -1.4202 41 1 -0.5165 -5.5352 -0.8302 42 1 -0.1528 -4.1249 0.1926 43 1 2.1791 -4.8826 -3.3135 44 1 0.8454 -5.9778 -2.8782 45 1 0.4923 -4.3356 -3.4677 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610405858.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:29:06 Heat of formation + Delta-G solvation = -72.292617 kcal Electronic energy + Delta-G solvation = -28466.182494 eV Core-core repulsion = 24484.820057 eV Total energy + Delta-G solvation = -3981.362437 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -42.54835 -41.03086 -39.69225 -37.91680 -36.99924 -36.32351 -34.52195 -33.65907 -32.90356 -30.03281 -29.34716 -28.42485 -27.98024 -26.68977 -24.95772 -23.33565 -22.75202 -21.42876 -20.92682 -20.02475 -19.01217 -18.75608 -18.25781 -17.46883 -17.17585 -16.64899 -16.48393 -16.33486 -15.96512 -15.90322 -15.29428 -15.00955 -14.84436 -14.62436 -14.33386 -14.06330 -13.83288 -13.72184 -13.56220 -13.48379 -13.36378 -13.11282 -13.00360 -12.79602 -12.64221 -12.36661 -12.32660 -12.16208 -12.11245 -11.92180 -11.83954 -11.58377 -11.50748 -11.49240 -10.93330 -10.53259 -10.31021 -9.92215 -9.49582 -8.46068 -5.88022 0.62639 1.16379 1.39386 1.45687 1.45884 1.58379 1.72374 2.13733 2.26695 2.54713 2.93467 3.23973 3.45946 3.61977 3.78252 3.84603 3.98081 4.08572 4.16691 4.21998 4.27561 4.37398 4.46469 4.53591 4.66554 4.73316 4.76660 4.78831 4.86912 4.90035 4.93808 5.02345 5.06676 5.09730 5.12949 5.30678 5.32877 5.45607 5.48349 5.52229 5.94149 5.99606 6.02101 6.40774 6.53779 7.10964 7.31047 7.46157 7.97252 8.62246 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020776 B = 0.003415 C = 0.003086 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1347.373902 B = 8197.548965 C = 9071.693538 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.141 3.859 3 C -0.298 4.298 4 C 0.524 3.476 5 O -0.620 6.620 6 N -0.435 5.435 7 C -0.341 4.341 8 H 0.084 0.916 9 C 0.000 4.000 10 N -0.889 5.889 11 Si 0.995 3.005 12 H -0.259 1.259 13 H -0.281 1.281 14 H -0.275 1.275 15 C 0.149 3.851 16 C 0.501 3.499 17 O -0.547 6.547 18 O -0.519 6.519 19 C 0.067 3.933 20 N -0.305 5.305 21 N -0.349 5.349 22 C 0.120 3.880 23 C -0.127 4.127 24 C -0.086 4.086 25 C -0.154 4.154 26 C -0.149 4.149 27 H 0.090 0.910 28 H 0.112 0.888 29 H 0.071 0.929 30 H 0.276 0.724 31 H 0.118 0.882 32 H 0.104 0.896 33 H 0.414 0.586 34 H 0.166 0.834 35 H 0.109 0.891 36 H 0.125 0.875 37 H 0.063 0.937 38 H 0.054 0.946 39 H 0.083 0.917 40 H 0.055 0.945 41 H 0.065 0.935 42 H 0.066 0.934 43 H 0.048 0.952 44 H 0.068 0.932 45 H 0.051 0.949 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.514 -20.370 2.007 20.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.008 3.992 3 C -0.313 4.313 4 C 0.314 3.686 5 O -0.507 6.507 6 N -0.152 5.152 7 C -0.468 4.468 8 H 0.102 0.898 9 C -0.202 4.202 10 N -0.528 5.528 11 Si 0.818 3.182 12 H -0.183 1.183 13 H -0.207 1.207 14 H -0.200 1.200 15 C 0.023 3.977 16 C 0.343 3.657 17 O -0.436 6.436 18 O -0.331 6.331 19 C -0.119 4.119 20 N -0.126 5.126 21 N -0.130 5.130 22 C 0.001 3.999 23 C -0.166 4.166 24 C -0.105 4.105 25 C -0.211 4.211 26 C -0.206 4.206 27 H 0.109 0.891 28 H 0.131 0.869 29 H 0.090 0.910 30 H 0.087 0.913 31 H 0.135 0.865 32 H 0.122 0.878 33 H 0.273 0.727 34 H 0.183 0.817 35 H 0.128 0.872 36 H 0.143 0.857 37 H 0.082 0.918 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.074 0.926 41 H 0.084 0.916 42 H 0.085 0.915 43 H 0.067 0.933 44 H 0.087 0.913 45 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.457 -21.242 1.676 21.587 hybrid contribution 0.455 2.345 -0.501 2.441 sum -3.002 -18.897 1.175 19.170 Atomic orbital electron populations 1.20557 0.84332 1.04790 1.04517 1.21686 0.95834 0.85665 0.95981 1.20132 0.93838 0.93577 1.23735 1.17522 0.84873 0.85187 0.80978 1.90537 1.36920 1.80874 1.42360 1.43495 1.27339 1.10130 1.34266 1.19696 1.08316 0.86538 1.32297 0.89764 1.25984 0.95386 1.01346 0.97462 1.69871 1.06698 1.37931 1.38335 0.84906 0.77883 0.76386 0.79021 1.18349 1.20693 1.19954 1.20794 0.81281 1.00810 0.94859 1.23649 0.85933 0.72175 0.83924 1.90616 1.87881 1.41759 1.23355 1.84463 1.17071 1.79361 1.52210 1.23805 0.96748 0.92212 0.99170 1.77000 0.97839 1.11937 1.25784 1.48712 1.02736 1.06901 1.54667 1.22330 1.02777 0.75177 0.99576 1.22027 1.01778 0.97812 0.94953 1.21021 0.98349 0.93452 0.97676 1.21962 0.95359 1.02618 1.01130 1.21841 1.01585 1.01490 0.95702 0.89132 0.86912 0.90992 0.91340 0.86470 0.87828 0.72698 0.81675 0.87231 0.85709 0.91842 0.92724 0.89863 0.92631 0.91624 0.91501 0.93252 0.91337 0.93028 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -2.19 9.73 71.23 0.69 -1.50 16 2 C 0.14 4.74 7.01 42.15 0.30 5.04 16 3 C -0.30 -12.86 5.05 -20.15 -0.10 -12.97 16 4 C 0.52 27.80 7.16 86.65 0.62 28.42 16 5 O -0.62 -36.78 16.48 -4.11 -0.07 -36.85 16 6 N -0.43 -23.40 2.11 -643.37 -1.36 -24.76 16 7 C -0.34 -19.72 9.40 84.07 0.79 -18.93 16 8 H 0.08 5.20 7.34 -2.91 -0.02 5.18 16 9 C 0.00 -0.01 4.86 84.93 0.41 0.40 16 10 N -0.89 -46.99 8.99 21.67 0.19 -46.79 16 11 Si 0.99 42.27 29.63 68.60 2.03 44.31 16 12 H -0.26 -10.20 7.11 99.48 0.71 -9.49 16 13 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 14 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 15 C 0.15 6.89 4.81 85.63 0.41 7.31 16 16 C 0.50 23.18 3.91 71.24 0.28 23.46 16 17 O -0.55 -30.04 16.70 21.95 0.37 -29.67 16 18 O -0.52 -18.88 13.42 -51.37 -0.69 -19.57 16 19 C 0.07 2.68 9.80 85.65 0.84 3.52 16 20 N -0.31 -10.71 12.50 -56.26 -0.70 -11.42 16 21 N -0.35 -10.10 3.58 -332.92 -1.19 -11.29 16 22 C 0.12 2.11 5.97 86.38 0.52 2.62 16 23 C -0.13 -2.13 5.01 30.59 0.15 -1.97 16 24 C -0.09 -0.97 2.92 -10.80 -0.03 -1.00 16 25 C -0.15 -1.37 8.95 71.98 0.64 -0.73 16 26 C -0.15 -1.77 9.19 71.98 0.66 -1.11 16 27 H 0.09 2.29 8.14 -2.39 -0.02 2.27 16 28 H 0.11 1.81 7.05 -2.39 -0.02 1.80 16 29 H 0.07 2.23 7.96 -2.39 -0.02 2.21 16 30 H 0.28 13.70 8.31 -92.71 -0.77 12.93 16 31 H 0.12 5.54 6.37 -2.39 -0.02 5.53 16 32 H 0.10 4.23 5.81 -2.39 -0.01 4.22 16 33 H 0.41 11.37 9.10 -74.05 -0.67 10.69 16 34 H 0.17 6.87 5.25 -2.91 -0.02 6.85 16 35 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 36 H 0.13 1.46 5.44 -2.39 -0.01 1.45 16 37 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 38 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 39 H 0.08 0.81 8.14 -2.38 -0.02 0.79 16 40 H 0.05 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.06 0.50 8.14 -2.38 -0.02 0.48 16 42 H 0.07 0.47 6.56 -2.39 -0.02 0.45 16 43 H 0.05 0.65 8.14 -2.39 -0.02 0.63 16 44 H 0.07 0.65 8.14 -2.39 -0.02 0.64 16 45 H 0.05 0.66 8.14 -2.38 -0.02 0.64 16 Total: -1.00 -79.06 369.12 5.12 -73.94 By element: Atomic # 1 Polarization: 29.19 SS G_CDS: 0.35 Total: 29.54 kcal Atomic # 6 Polarization: 26.37 SS G_CDS: 6.18 Total: 32.56 kcal Atomic # 7 Polarization: -91.19 SS G_CDS: -3.06 Total: -94.25 kcal Atomic # 8 Polarization: -85.70 SS G_CDS: -0.39 Total: -86.09 kcal Atomic # 14 Polarization: 42.27 SS G_CDS: 2.03 Total: 44.31 kcal Total: -79.06 5.12 -73.94 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610405858.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.651 kcal (2) G-P(sol) polarization free energy of solvation -79.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.944 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.293 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds