Wall clock time and date at job start Tue Mar 31 2020 14:33:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.46850 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47304 * 299.99973 * 9 8 6 11 11 C 1.52994 * 109.47146 * 60.00603 * 9 8 6 12 12 C 1.53007 * 109.46603 * 180.02562 * 9 8 6 13 13 C 1.50707 * 109.46858 * 180.02562 * 12 9 8 14 14 O 1.20827 * 120.00030 * 359.97438 * 13 12 9 15 15 O 1.34222 * 119.99683 * 180.02562 * 13 12 9 16 16 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 17 17 C 1.46491 * 126.04623 * 179.87688 * 16 4 3 18 18 C 1.50702 * 109.46957 * 269.71277 * 17 16 4 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 28 28 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 29 29 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 30 30 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 31 31 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 32 32 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 33 33 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 34 34 H 1.08999 * 109.46759 * 60.00337 * 10 9 8 35 35 H 1.08999 * 109.47193 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.47272 * 300.00692 * 10 9 8 37 37 H 1.08997 * 109.47379 * 60.00063 * 11 9 8 38 38 H 1.08999 * 109.47006 * 179.97438 * 11 9 8 39 39 H 1.08999 * 109.47053 * 299.99745 * 11 9 8 40 40 H 1.08995 * 109.46988 * 299.99815 * 12 9 8 41 41 H 1.09002 * 109.46909 * 60.00371 * 12 9 8 42 42 H 0.96705 * 117.00024 * 179.97438 * 15 13 12 43 43 H 1.09004 * 109.47166 * 149.71543 * 17 16 4 44 44 H 1.08994 * 109.47507 * 29.71250 * 17 16 4 45 45 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 6 5.4088 5.2178 0.0307 10 6 4.5785 5.5099 -1.2207 11 6 4.5685 5.4997 1.2777 12 6 6.6502 6.1122 0.0388 13 6 6.2272 7.5586 0.0435 14 8 5.0533 7.8447 0.0403 15 8 7.1545 8.5290 0.0503 16 7 3.6093 -0.6405 0.0013 17 6 4.7870 -1.5116 0.0026 18 6 5.1921 -1.8109 -1.4178 19 1 4.6288 -1.3935 -2.2393 20 6 6.2856 -2.6124 -1.6685 21 7 6.9718 -3.1203 -0.6681 22 14 6.7923 -2.9770 -3.4290 23 1 5.8641 -2.2912 -4.3635 24 1 8.1755 -2.4872 -3.6576 25 1 6.7406 -4.4422 -3.6658 26 7 2.2731 -1.0608 0.0005 27 1 -0.3634 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5136 30 1 1.9901 2.1596 -0.0009 31 1 5.6359 1.1294 0.0155 32 1 6.4297 3.5415 0.9182 33 1 6.4372 3.5481 -0.8617 34 1 3.6941 4.8727 -1.2268 35 1 4.2728 6.5561 -1.2179 36 1 5.1772 5.3089 -2.1091 37 1 5.1601 5.2917 2.1692 38 1 4.2629 6.5460 1.2810 39 1 3.6842 4.8625 1.2716 40 1 7.2421 5.9042 0.9301 41 1 7.2486 5.9112 -0.8499 42 1 6.8349 9.4417 0.0528 43 1 4.5494 -2.4431 0.5166 44 1 5.6079 -1.0120 0.5169 45 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610470826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:09 Heat of formation + Delta-G solvation = -56.542065 kcal Electronic energy + Delta-G solvation = -27772.000990 eV Core-core repulsion = 23791.321549 eV Total energy + Delta-G solvation = -3980.679442 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.13136 -40.66648 -39.48463 -37.07934 -35.81419 -34.66430 -33.75968 -32.07756 -29.89714 -29.05673 -28.56881 -27.32832 -27.18326 -26.02662 -23.03488 -22.65303 -21.49802 -19.83987 -19.37854 -18.82185 -18.24376 -16.98961 -16.79812 -16.52580 -16.36136 -16.24266 -15.56524 -14.93996 -14.56176 -14.48373 -14.19149 -14.01203 -13.93590 -13.08211 -12.84332 -12.81171 -12.79384 -12.56247 -12.48665 -12.18231 -12.10023 -11.77067 -11.59264 -11.49866 -11.45478 -11.19252 -11.11820 -11.02310 -10.91540 -10.78662 -10.36172 -10.22955 -10.20073 -9.80127 -9.76592 -9.25656 -8.74538 -7.90410 -7.41762 -6.35410 -4.43673 1.96149 2.27805 2.65324 2.96205 3.12982 3.13455 3.22565 3.28814 3.62316 3.81166 4.22793 4.34554 4.60145 4.64838 4.81748 4.98085 5.12299 5.16120 5.26859 5.31657 5.37981 5.43729 5.60305 5.65873 5.97577 6.01600 6.03672 6.04393 6.07478 6.17314 6.18909 6.28811 6.35288 6.48211 6.56747 6.66085 6.74123 6.83185 7.03980 7.53078 7.58462 7.64895 7.66518 7.78372 7.93810 8.35210 8.62198 8.71437 9.24031 10.71713 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.003392 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.271724 B = 8251.811888 C =10009.351982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.062 4.062 2 C 0.050 3.950 3 C -0.295 4.295 4 C 0.302 3.698 5 N -0.641 5.641 6 C 0.521 3.479 7 O -0.504 6.504 8 C -0.130 4.130 9 C -0.031 4.031 10 C -0.168 4.168 11 C -0.168 4.168 12 C -0.108 4.108 13 C 0.478 3.522 14 O -0.500 6.500 15 O -0.522 6.522 16 N -0.345 5.345 17 C 0.257 3.743 18 C -0.539 4.539 19 H 0.065 0.935 20 C 0.066 3.934 21 N -0.890 5.890 22 Si 0.906 3.094 23 H -0.271 1.271 24 H -0.281 1.281 25 H -0.280 1.280 26 N -0.287 5.287 27 H 0.067 0.933 28 H 0.070 0.930 29 H 0.065 0.935 30 H 0.162 0.838 31 H 0.415 0.585 32 H 0.100 0.900 33 H 0.101 0.899 34 H 0.088 0.912 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.041 0.959 38 H 0.075 0.925 39 H 0.088 0.912 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.408 0.592 43 H 0.056 0.944 44 H 0.044 0.956 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.457 19.005 2.827 19.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.115 4.115 3 C -0.327 4.327 4 C 0.079 3.921 5 N -0.288 5.288 6 C 0.308 3.692 7 O -0.378 6.378 8 C -0.170 4.170 9 C -0.031 4.031 10 C -0.225 4.225 11 C -0.225 4.225 12 C -0.145 4.145 13 C 0.321 3.679 14 O -0.388 6.388 15 O -0.334 6.334 16 N -0.131 5.131 17 C 0.139 3.861 18 C -0.577 4.577 19 H 0.083 0.917 20 C -0.137 4.137 21 N -0.528 5.528 22 Si 0.733 3.267 23 H -0.196 1.196 24 H -0.206 1.206 25 H -0.205 1.205 26 N -0.112 5.112 27 H 0.086 0.914 28 H 0.088 0.912 29 H 0.084 0.916 30 H 0.179 0.821 31 H 0.252 0.748 32 H 0.118 0.882 33 H 0.119 0.881 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.061 0.939 37 H 0.060 0.940 38 H 0.093 0.907 39 H 0.106 0.894 40 H 0.125 0.875 41 H 0.125 0.875 42 H 0.267 0.733 43 H 0.074 0.926 44 H 0.061 0.939 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.846 17.582 2.873 17.835 hybrid contribution 1.050 0.759 -0.946 1.604 sum 1.897 18.341 1.928 18.540 Atomic orbital electron populations 1.20014 0.87662 1.02411 1.01995 1.22033 0.96483 0.91116 1.01871 1.21272 0.89047 1.00421 1.21985 1.17959 0.88124 0.83311 1.02668 1.42886 1.08186 1.05737 1.72000 1.20474 0.91592 0.81091 0.76021 1.90534 1.27128 1.72939 1.47216 1.21719 0.96126 0.93992 1.05179 1.20055 0.93394 0.90779 0.98913 1.22361 1.01447 1.04416 0.94286 1.22360 1.01367 1.04481 0.94276 1.21516 1.00175 0.86926 1.05913 1.23471 0.83715 0.88979 0.71744 1.90656 1.19292 1.84028 1.44795 1.84549 1.42947 1.20108 1.85802 1.49338 1.06495 1.02253 1.55006 1.19606 0.77857 0.89760 0.98896 1.21386 1.13022 1.31951 0.91389 0.91664 1.24941 0.95720 0.94899 0.98175 1.69929 1.19081 1.32799 1.30974 0.86305 0.78332 0.78463 0.83642 1.19555 1.20638 1.20531 1.77351 0.86172 1.21852 1.25849 0.91418 0.91157 0.91558 0.82083 0.74804 0.88220 0.88070 0.89362 0.90670 0.93897 0.93972 0.90654 0.89357 0.87525 0.87474 0.73306 0.92620 0.93852 0.92226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.93 10.44 36.00 0.38 -0.56 16 2 C 0.05 1.00 7.21 -82.44 -0.59 0.41 16 3 C -0.30 -5.98 9.58 -39.78 -0.38 -6.36 16 4 C 0.30 6.25 7.66 -153.16 -1.17 5.07 16 5 N -0.64 -10.66 5.41 -11.46 -0.06 -10.73 16 6 C 0.52 7.50 7.21 -10.98 -0.08 7.43 16 7 O -0.50 -8.33 8.48 5.55 0.05 -8.29 16 8 C -0.13 -1.27 4.77 -27.88 -0.13 -1.41 16 9 C -0.03 -0.31 0.51 -154.51 -0.08 -0.39 16 10 C -0.17 -2.01 7.88 37.16 0.29 -1.71 16 11 C -0.17 -1.95 7.88 37.15 0.29 -1.65 16 12 C -0.11 -0.80 4.88 -27.88 -0.14 -0.93 16 13 C 0.48 4.20 7.74 36.01 0.28 4.48 16 14 O -0.50 -5.86 12.11 -18.75 -0.23 -6.08 16 15 O -0.52 -3.44 13.42 -39.24 -0.53 -3.96 16 16 N -0.35 -8.05 3.60 -61.58 -0.22 -8.27 16 17 C 0.26 6.35 6.01 -5.20 -0.03 6.32 16 18 C -0.54 -14.35 9.39 -34.44 -0.32 -14.68 16 19 H 0.07 1.82 7.81 -52.49 -0.41 1.41 16 20 C 0.07 1.74 5.46 -17.82 -0.10 1.64 16 21 N -0.89 -24.05 13.29 55.43 0.74 -23.32 16 22 Si 0.91 20.46 29.54 -169.99 -5.02 15.44 16 23 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 24 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 25 H -0.28 -6.32 7.11 56.52 0.40 -5.91 16 26 N -0.29 -6.70 12.56 33.65 0.42 -6.28 16 27 H 0.07 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 30 H 0.16 3.14 5.83 -52.49 -0.31 2.84 16 31 H 0.42 6.35 7.96 -40.82 -0.32 6.02 16 32 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 33 H 0.10 0.83 8.14 -51.93 -0.42 0.40 16 34 H 0.09 1.27 5.51 -51.93 -0.29 0.99 16 35 H 0.07 0.96 5.52 -51.93 -0.29 0.67 16 36 H 0.04 0.46 8.14 -51.93 -0.42 0.04 16 37 H 0.04 0.42 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.94 5.52 -51.93 -0.29 0.65 16 39 H 0.09 1.24 5.51 -51.93 -0.29 0.95 16 40 H 0.11 0.60 8.14 -51.93 -0.42 0.17 16 41 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 42 H 0.41 1.11 9.10 45.56 0.41 1.52 16 43 H 0.06 1.49 8.14 -51.93 -0.42 1.07 16 44 H 0.04 1.03 7.49 -51.93 -0.39 0.64 16 45 H 0.27 6.82 8.31 -40.82 -0.34 6.48 16 LS Contribution 366.33 15.07 5.52 5.52 Total: -1.00 -33.20 366.33 -6.64 -39.84 By element: Atomic # 1 Polarization: 13.98 SS G_CDS: -5.52 Total: 8.46 kcal Atomic # 6 Polarization: -0.55 SS G_CDS: -1.79 Total: -2.34 kcal Atomic # 7 Polarization: -49.46 SS G_CDS: 0.88 Total: -48.59 kcal Atomic # 8 Polarization: -17.63 SS G_CDS: -0.71 Total: -18.33 kcal Atomic # 14 Polarization: 20.46 SS G_CDS: -5.02 Total: 15.44 kcal Total LS contribution 5.52 Total: 5.52 kcal Total: -33.20 -6.64 -39.84 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610470826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.701 kcal (2) G-P(sol) polarization free energy of solvation -33.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.900 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.841 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds