Wall clock time and date at job start Tue Mar 31 2020 14:33:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.39762 * 125.84077 * 2 1 4 4 C 1.36110 * 107.82869 * 179.72419 * 3 2 1 5 5 N 1.39471 * 126.21626 * 180.26709 * 4 3 2 6 6 C 1.34779 * 119.99891 * 0.14378 * 5 4 3 7 7 O 1.21293 * 119.99912 * 0.02562 * 6 5 4 8 8 C 1.50706 * 119.99978 * 179.97438 * 6 5 4 9 9 C 1.52998 * 109.46850 * 180.02562 * 8 6 5 10 10 C 1.53000 * 109.47304 * 299.99973 * 9 8 6 11 11 C 1.52994 * 109.47146 * 60.00603 * 9 8 6 12 12 C 1.53007 * 109.46603 * 180.02562 * 9 8 6 13 13 C 1.50707 * 109.46858 * 180.02562 * 12 9 8 14 14 O 1.20827 * 120.00030 * 359.97438 * 13 12 9 15 15 O 1.34222 * 119.99683 * 180.02562 * 13 12 9 16 16 N 1.35266 * 107.56912 * 0.38873 * 4 3 2 17 17 C 1.46491 * 126.04623 * 179.87688 * 16 4 3 18 18 C 1.50702 * 109.46957 * 269.71277 * 17 16 4 19 19 H 1.08002 * 120.00299 * 0.02562 * 18 17 16 20 20 C 1.37884 * 119.99942 * 179.72213 * 18 17 16 21 21 N 1.31514 * 119.99698 * 0.28408 * 20 18 17 22 22 Si 1.86794 * 119.99837 * 180.27476 * 20 18 17 23 23 H 1.48496 * 109.47341 * 0.02562 * 22 20 18 24 24 H 1.48508 * 109.46983 * 120.00379 * 22 20 18 25 25 H 1.48503 * 109.47491 * 240.00192 * 22 20 18 26 26 N 1.30855 * 125.84075 * 179.97438 * 2 1 3 27 27 H 1.09003 * 109.47188 * 270.01578 * 1 2 3 28 28 H 1.08998 * 109.47119 * 30.01737 * 1 2 3 29 29 H 1.09003 * 109.47108 * 150.01312 * 1 2 3 30 30 H 1.07999 * 126.07992 * 359.93770 * 3 2 1 31 31 H 0.97004 * 120.00096 * 180.14647 * 5 4 3 32 32 H 1.08994 * 109.47320 * 300.00736 * 8 6 5 33 33 H 1.09002 * 109.46478 * 60.00611 * 8 6 5 34 34 H 1.08999 * 109.46759 * 60.00337 * 10 9 8 35 35 H 1.08999 * 109.47193 * 180.02562 * 10 9 8 36 36 H 1.09000 * 109.47272 * 300.00692 * 10 9 8 37 37 H 1.08997 * 109.47379 * 60.00063 * 11 9 8 38 38 H 1.08999 * 109.47006 * 179.97438 * 11 9 8 39 39 H 1.08999 * 109.47053 * 299.99745 * 11 9 8 40 40 H 1.08995 * 109.46988 * 299.99815 * 12 9 8 41 41 H 1.09002 * 109.46909 * 60.00371 * 12 9 8 42 42 H 0.96705 * 117.00024 * 179.97438 * 15 13 12 43 43 H 1.09004 * 109.47166 * 149.71543 * 17 16 4 44 44 H 1.08994 * 109.47507 * 29.71250 * 17 16 4 45 45 H 0.97005 * 119.99651 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.3253 1.1330 0.0000 4 6 3.6197 0.7121 0.0062 5 7 4.7513 1.5274 0.0136 6 6 4.6157 2.8684 0.0180 7 8 3.5096 3.3661 0.0160 8 6 5.8384 3.7493 0.0265 9 6 5.4088 5.2178 0.0307 10 6 4.5785 5.5099 -1.2207 11 6 4.5685 5.4997 1.2777 12 6 6.6502 6.1122 0.0388 13 6 6.2272 7.5586 0.0435 14 8 5.0533 7.8447 0.0403 15 8 7.1545 8.5290 0.0503 16 7 3.6093 -0.6405 0.0013 17 6 4.7870 -1.5116 0.0026 18 6 5.1921 -1.8109 -1.4178 19 1 4.6288 -1.3935 -2.2393 20 6 6.2856 -2.6124 -1.6685 21 7 6.9718 -3.1203 -0.6681 22 14 6.7923 -2.9770 -3.4290 23 1 5.8641 -2.2912 -4.3635 24 1 8.1755 -2.4872 -3.6576 25 1 6.7406 -4.4422 -3.6658 26 7 2.2731 -1.0608 0.0005 27 1 -0.3634 0.0003 1.0277 28 1 -0.3633 0.8898 -0.5141 29 1 -0.3633 -0.8901 -0.5136 30 1 1.9901 2.1596 -0.0009 31 1 5.6359 1.1294 0.0155 32 1 6.4297 3.5415 0.9182 33 1 6.4372 3.5481 -0.8617 34 1 3.6941 4.8727 -1.2268 35 1 4.2728 6.5561 -1.2179 36 1 5.1772 5.3089 -2.1091 37 1 5.1601 5.2917 2.1692 38 1 4.2629 6.5460 1.2810 39 1 3.6842 4.8625 1.2716 40 1 7.2421 5.9042 0.9301 41 1 7.2486 5.9112 -0.8499 42 1 6.8349 9.4417 0.0528 43 1 4.5494 -2.4431 0.5166 44 1 5.6079 -1.0120 0.5169 45 1 7.7409 -3.6845 -0.8445 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610470826.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:33:08 Heat of formation + Delta-G solvation = -78.700903 kcal Electronic energy + Delta-G solvation = -27772.961870 eV Core-core repulsion = 23791.321549 eV Total energy + Delta-G solvation = -3981.640321 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -42.44156 -41.61010 -40.64091 -37.85108 -36.61190 -36.12584 -35.50636 -33.81491 -31.11233 -30.45757 -29.56995 -28.51294 -28.10907 -27.78457 -24.77238 -23.64826 -22.61283 -21.25231 -20.74338 -19.74511 -18.94616 -18.83895 -18.23830 -17.74064 -17.27782 -16.91952 -16.73563 -16.59516 -16.01935 -15.75282 -15.53850 -15.13431 -14.74221 -14.53380 -14.43255 -14.08842 -13.87559 -13.65884 -13.56200 -13.36494 -13.20296 -13.08458 -12.90567 -12.88771 -12.70416 -12.44564 -12.31187 -12.28385 -12.08352 -11.92016 -11.74902 -11.58417 -11.50568 -11.36253 -10.98902 -10.75363 -10.45736 -9.59864 -9.00505 -8.35672 -6.52929 0.87011 1.34142 1.35776 1.38307 1.42009 1.52302 1.70591 2.11793 2.15683 2.32453 2.43688 2.94711 3.47173 3.85607 3.86634 3.88551 3.94317 4.27034 4.42240 4.54790 4.63553 4.65086 4.67940 4.72779 4.75996 4.85012 4.85687 4.89083 4.92893 4.98266 5.05565 5.13356 5.18464 5.24050 5.26746 5.33541 5.52282 5.59790 5.61051 5.78251 5.89441 5.98901 6.23112 6.36836 6.59810 7.04391 7.12267 7.15047 7.19921 8.70908 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.011775 B = 0.003392 C = 0.002797 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2377.271724 B = 8251.811888 C =10009.351982 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.056 3.944 3 C -0.310 4.310 4 C 0.303 3.697 5 N -0.642 5.642 6 C 0.516 3.484 7 O -0.525 6.525 8 C -0.122 4.122 9 C -0.027 4.027 10 C -0.165 4.165 11 C -0.164 4.164 12 C -0.104 4.104 13 C 0.479 3.521 14 O -0.538 6.538 15 O -0.517 6.517 16 N -0.369 5.369 17 C 0.273 3.727 18 C -0.555 4.555 19 H 0.045 0.955 20 C 0.029 3.971 21 N -0.913 5.913 22 Si 0.969 3.031 23 H -0.278 1.278 24 H -0.262 1.262 25 H -0.277 1.277 26 N -0.335 5.335 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.071 0.929 30 H 0.168 0.832 31 H 0.421 0.579 32 H 0.132 0.868 33 H 0.128 0.872 34 H 0.057 0.943 35 H 0.063 0.937 36 H 0.055 0.945 37 H 0.058 0.942 38 H 0.063 0.937 39 H 0.058 0.942 40 H 0.134 0.866 41 H 0.132 0.868 42 H 0.424 0.576 43 H 0.024 0.976 44 H 0.051 0.949 45 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.373 20.266 2.303 20.673 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.109 4.109 3 C -0.341 4.341 4 C 0.080 3.920 5 N -0.290 5.290 6 C 0.306 3.694 7 O -0.400 6.400 8 C -0.161 4.161 9 C -0.028 4.028 10 C -0.222 4.222 11 C -0.221 4.221 12 C -0.141 4.141 13 C 0.324 3.676 14 O -0.429 6.429 15 O -0.331 6.331 16 N -0.154 5.154 17 C 0.154 3.846 18 C -0.593 4.593 19 H 0.064 0.936 20 C -0.173 4.173 21 N -0.551 5.551 22 Si 0.793 3.207 23 H -0.203 1.203 24 H -0.187 1.187 25 H -0.203 1.203 26 N -0.161 5.161 27 H 0.107 0.893 28 H 0.110 0.890 29 H 0.090 0.910 30 H 0.185 0.815 31 H 0.259 0.741 32 H 0.150 0.850 33 H 0.146 0.854 34 H 0.076 0.924 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.077 0.923 38 H 0.081 0.919 39 H 0.077 0.923 40 H 0.152 0.848 41 H 0.150 0.850 42 H 0.286 0.714 43 H 0.042 0.958 44 H 0.068 0.932 45 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 2.790 18.887 2.361 19.238 hybrid contribution 0.388 0.496 -0.743 0.975 sum 3.179 19.384 1.618 19.709 Atomic orbital electron populations 1.20204 0.84184 1.03742 1.03755 1.22870 0.98644 0.90266 0.99147 1.21470 0.89149 1.00679 1.22838 1.18369 0.89819 0.82737 1.01041 1.43161 1.07290 1.06199 1.72363 1.21509 0.92980 0.80385 0.74561 1.90541 1.28721 1.73014 1.47748 1.21837 0.94067 0.92199 1.07986 1.19985 0.94248 0.91653 0.96908 1.22277 1.00865 1.02939 0.96070 1.22273 1.00836 1.02980 0.96007 1.21527 0.98873 0.85287 1.08459 1.23747 0.83279 0.89886 0.70691 1.90662 1.20876 1.84651 1.46694 1.84508 1.42293 1.21106 1.85164 1.49156 1.06204 1.03046 1.57020 1.19211 0.78672 0.88956 0.97756 1.21423 1.13442 1.32792 0.91614 0.93633 1.25664 0.95394 0.94286 1.01981 1.69996 1.19409 1.32940 1.32764 0.85345 0.78498 0.78112 0.78722 1.20261 1.18692 1.20284 1.77293 0.86591 1.23676 1.28498 0.89323 0.88989 0.91004 0.81502 0.74121 0.84970 0.85433 0.92425 0.91807 0.92641 0.92312 0.91858 0.92322 0.84767 0.84997 0.71436 0.95765 0.93156 0.91622 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -1.75 10.44 71.23 0.74 -1.01 16 2 C 0.06 2.27 7.21 43.07 0.31 2.58 16 3 C -0.31 -12.68 9.58 22.14 0.21 -12.47 16 4 C 0.30 12.74 7.66 131.32 1.01 13.75 16 5 N -0.64 -21.10 5.41 -308.55 -1.67 -22.77 16 6 C 0.52 14.36 7.21 87.66 0.63 14.99 16 7 O -0.53 -17.48 8.48 -3.07 -0.03 -17.50 16 8 C -0.12 -2.01 4.77 29.85 0.14 -1.87 16 9 C -0.03 -0.49 0.51 -52.18 -0.03 -0.52 16 10 C -0.16 -3.80 7.88 71.98 0.57 -3.23 16 11 C -0.16 -3.65 7.88 71.98 0.57 -3.08 16 12 C -0.10 -1.16 4.88 29.85 0.15 -1.01 16 13 C 0.48 7.33 7.74 71.24 0.55 7.88 16 14 O -0.54 -12.21 12.11 21.96 0.27 -11.94 16 15 O -0.52 -5.40 13.42 -51.34 -0.69 -6.09 16 16 N -0.37 -17.70 3.60 -348.73 -1.26 -18.96 16 17 C 0.27 13.95 6.01 85.64 0.51 14.46 16 18 C -0.55 -30.08 9.39 25.60 0.24 -29.84 16 19 H 0.05 2.61 7.81 -2.91 -0.02 2.58 16 20 C 0.03 1.49 5.46 84.66 0.46 1.95 16 21 N -0.91 -49.19 13.29 21.45 0.28 -48.91 16 22 Si 0.97 41.52 29.54 68.60 2.03 43.55 16 23 H -0.28 -12.11 7.11 99.48 0.71 -11.40 16 24 H -0.26 -10.43 7.11 99.48 0.71 -9.73 16 25 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 26 N -0.34 -16.12 12.56 -47.45 -0.60 -16.72 16 27 H 0.09 2.22 8.14 -2.39 -0.02 2.20 16 28 H 0.09 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 30 H 0.17 6.60 5.83 -2.91 -0.02 6.58 16 31 H 0.42 12.55 7.96 -92.70 -0.74 11.82 16 32 H 0.13 1.42 8.14 -2.39 -0.02 1.40 16 33 H 0.13 1.54 8.14 -2.39 -0.02 1.52 16 34 H 0.06 1.69 5.51 -2.39 -0.01 1.68 16 35 H 0.06 1.63 5.52 -2.39 -0.01 1.61 16 36 H 0.05 1.10 8.14 -2.39 -0.02 1.08 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.06 1.57 5.52 -2.39 -0.01 1.56 16 39 H 0.06 1.66 5.51 -2.39 -0.01 1.65 16 40 H 0.13 0.83 8.14 -2.39 -0.02 0.81 16 41 H 0.13 0.89 8.14 -2.39 -0.02 0.87 16 42 H 0.42 1.38 9.10 -74.05 -0.67 0.71 16 43 H 0.02 1.37 8.14 -2.38 -0.02 1.35 16 44 H 0.05 2.45 7.49 -2.39 -0.02 2.43 16 45 H 0.27 13.76 8.31 -92.70 -0.77 12.99 16 Total: -1.00 -74.87 366.33 4.04 -70.82 By element: Atomic # 1 Polarization: 26.29 SS G_CDS: -0.37 Total: 25.92 kcal Atomic # 6 Polarization: -3.48 SS G_CDS: 6.07 Total: 2.59 kcal Atomic # 7 Polarization: -104.11 SS G_CDS: -3.24 Total: -107.35 kcal Atomic # 8 Polarization: -35.09 SS G_CDS: -0.45 Total: -35.54 kcal Atomic # 14 Polarization: 41.52 SS G_CDS: 2.03 Total: 43.55 kcal Total: -74.87 4.04 -70.82 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610470826.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.876 kcal (2) G-P(sol) polarization free energy of solvation -74.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.742 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds