Wall clock time and date at job start Tue Mar 31 2020 14:31:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30829 * 125.89641 * 2 1 4 4 N 1.40088 * 108.20298 * 180.02562 * 3 2 1 5 5 C 1.46496 * 126.03900 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47320 * 90.01892 * 5 4 3 7 7 C 1.50703 * 109.47119 * 180.02562 * 6 5 4 8 8 O 1.20825 * 119.99706 * 0.02562 * 7 6 5 9 9 O 1.34222 * 120.00306 * 180.02562 * 7 6 5 10 10 C 1.34948 * 107.92478 * 359.75080 * 4 3 2 11 11 C 1.50706 * 126.12881 * 180.23742 * 10 4 3 12 12 C 1.35315 * 107.74694 * 0.39812 * 10 4 3 13 13 C 1.50699 * 126.04399 * 179.87171 * 12 10 4 14 14 N 1.46903 * 109.47066 * 269.71172 * 13 12 10 15 15 C 1.47957 * 111.00079 * 189.99834 * 14 13 12 16 16 C 1.53937 * 86.18208 * 222.41605 * 15 14 13 17 17 O 1.42896 * 113.73148 * 269.25755 * 16 15 14 18 18 C 1.50694 * 113.73443 * 138.07827 * 16 15 14 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 16 15 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 16 15 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47958 * 111.00224 * 90.63512 * 14 13 12 27 27 H 1.09006 * 109.47099 * 269.97705 * 1 2 3 28 28 H 1.09000 * 109.47212 * 29.97491 * 1 2 3 29 29 H 1.08998 * 109.47382 * 149.98061 * 1 2 3 30 30 H 1.09001 * 109.47194 * 210.02242 * 5 4 3 31 31 H 1.09001 * 109.46898 * 330.01868 * 5 4 3 32 32 H 1.08991 * 109.47175 * 300.00226 * 6 5 4 33 33 H 1.09003 * 109.46852 * 60.00584 * 6 5 4 34 34 H 0.96694 * 117.00497 * 179.97438 * 9 7 6 35 35 H 1.09001 * 109.47219 * 270.18612 * 11 10 4 36 36 H 1.08997 * 109.46442 * 30.18473 * 11 10 4 37 37 H 1.08998 * 109.46621 * 150.18387 * 11 10 4 38 38 H 1.08993 * 109.47490 * 149.70925 * 13 12 10 39 39 H 1.09002 * 109.47190 * 29.70456 * 13 12 10 40 40 H 1.08999 * 113.76060 * 108.09601 * 15 14 13 41 41 H 1.09001 * 113.85944 * 336.74419 * 15 14 13 42 42 H 0.96709 * 114.00030 * 178.09403 * 17 16 15 43 43 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 44 44 H 1.09003 * 113.76031 * 23.26533 * 26 14 13 45 45 H 1.08999 * 113.76380 * 251.90073 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.2017 1.8010 1.4424 7 6 6.4164 2.6930 1.4426 8 8 6.9025 3.0521 0.3963 9 8 6.9583 3.0886 2.6051 10 6 3.6142 -0.7154 0.0046 11 6 4.8350 -1.5990 0.0111 12 6 2.3271 -1.1331 -0.0005 13 6 1.8598 -2.5658 -0.0002 14 7 1.7077 -3.0315 -1.3851 15 6 1.0272 -4.3445 -1.4313 16 6 2.0662 -4.7300 -2.4997 17 8 1.6501 -4.4432 -3.8363 18 6 2.6104 -6.1262 -2.3407 19 1 2.2641 -6.7519 -1.5314 20 6 3.5506 -6.6049 -3.2285 21 7 3.9720 -5.8432 -4.2143 22 14 4.2257 -8.3354 -3.0309 23 1 5.4282 -8.3013 -2.1603 24 1 3.1911 -9.2027 -2.4123 25 1 4.5943 -8.8779 -4.3632 26 6 2.9614 -3.6417 -1.8801 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5141 30 1 5.6091 0.9986 -0.5150 31 1 4.5561 2.4336 -0.5131 32 1 4.3826 2.3031 1.9570 33 1 5.4356 0.8680 1.9552 34 1 7.7368 3.6600 2.5547 35 1 5.1339 -1.8133 -1.0151 36 1 5.6488 -1.0904 0.5278 37 1 4.6052 -2.5323 0.5251 38 1 0.9013 -2.6352 0.5138 39 1 2.5935 -3.1871 0.5135 40 1 0.0058 -4.2968 -1.8089 41 1 1.1128 -4.9182 -0.5084 42 1 2.3116 -4.6569 -4.5087 43 1 4.6337 -6.1798 -4.8385 44 1 3.6141 -4.0085 -1.0878 45 1 3.4856 -3.0324 -2.6165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001610570454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:27 Heat of formation + Delta-G solvation = -34.745103 kcal Electronic energy + Delta-G solvation = -27741.466906 eV Core-core repulsion = 23761.732651 eV Total energy + Delta-G solvation = -3979.734254 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.32628 -40.60804 -38.79901 -36.69963 -35.10514 -34.25781 -32.50061 -32.03995 -31.49839 -28.97480 -28.05058 -26.75418 -25.42120 -24.98161 -24.19078 -22.07587 -21.40987 -19.42093 -19.21884 -18.55175 -18.49451 -17.28425 -17.13722 -16.59819 -15.85431 -15.42839 -15.08116 -14.73694 -14.57111 -14.32602 -13.94174 -13.66037 -13.50767 -13.43932 -13.16409 -12.99622 -12.86797 -12.36739 -12.21182 -12.02667 -11.98721 -11.91645 -11.79816 -11.63676 -11.48285 -11.31625 -11.12853 -11.07624 -10.82647 -10.58225 -10.29314 -10.20028 -9.92930 -9.31406 -8.88689 -8.64065 -8.26901 -7.91199 -7.71409 -6.24427 -4.34322 1.73232 1.93735 2.23807 2.91672 2.97359 3.18609 3.26954 3.30282 4.21758 4.26037 4.33050 4.70965 4.81182 4.85741 4.96211 4.98048 5.06082 5.12252 5.30019 5.39348 5.40293 5.56803 5.61018 5.76431 5.79187 5.94556 6.01361 6.03234 6.06631 6.14143 6.14994 6.33846 6.36468 6.39374 6.54020 6.74933 6.91396 7.08240 7.17275 7.31060 7.39901 7.41474 7.78259 7.93477 8.02685 8.09661 8.67453 9.35645 9.69620 10.80875 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014640 B = 0.003087 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.123206 B = 9069.140645 C =10340.906482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.095 3.905 3 N -0.306 5.306 4 N -0.380 5.380 5 C 0.151 3.849 6 C -0.133 4.133 7 C 0.488 3.512 8 O -0.513 6.513 9 O -0.515 6.515 10 C 0.090 3.910 11 C -0.094 4.094 12 C -0.204 4.204 13 C 0.095 3.905 14 N -0.470 5.470 15 C 0.006 3.994 16 C 0.244 3.756 17 O -0.572 6.572 18 C -0.536 4.536 19 H 0.064 0.936 20 C 0.071 3.929 21 N -0.897 5.897 22 Si 0.901 3.099 23 H -0.279 1.279 24 H -0.272 1.272 25 H -0.284 1.284 26 C -0.008 4.008 27 H 0.071 0.929 28 H 0.068 0.932 29 H 0.084 0.916 30 H 0.101 0.899 31 H 0.103 0.897 32 H 0.116 0.884 33 H 0.112 0.888 34 H 0.413 0.587 35 H 0.085 0.915 36 H 0.062 0.938 37 H 0.086 0.914 38 H 0.069 0.931 39 H 0.042 0.958 40 H 0.074 0.926 41 H 0.063 0.937 42 H 0.388 0.612 43 H 0.270 0.730 44 H 0.057 0.943 45 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.439 13.285 13.196 19.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.072 4.072 3 N -0.127 5.127 4 N -0.163 5.163 5 C 0.029 3.971 6 C -0.172 4.172 7 C 0.329 3.671 8 O -0.401 6.401 9 O -0.328 6.328 10 C -0.035 4.035 11 C -0.152 4.152 12 C -0.215 4.215 13 C -0.034 4.034 14 N -0.193 5.193 15 C -0.122 4.122 16 C 0.202 3.798 17 O -0.384 6.384 18 C -0.574 4.574 19 H 0.083 0.917 20 C -0.131 4.131 21 N -0.538 5.538 22 Si 0.729 3.271 23 H -0.205 1.205 24 H -0.197 1.197 25 H -0.210 1.210 26 C -0.137 4.137 27 H 0.089 0.911 28 H 0.087 0.913 29 H 0.103 0.897 30 H 0.119 0.881 31 H 0.121 0.879 32 H 0.134 0.866 33 H 0.131 0.869 34 H 0.272 0.728 35 H 0.104 0.896 36 H 0.081 0.919 37 H 0.105 0.895 38 H 0.087 0.913 39 H 0.060 0.940 40 H 0.092 0.908 41 H 0.081 0.919 42 H 0.243 0.757 43 H 0.080 0.920 44 H 0.075 0.925 45 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 2.682 15.254 12.729 20.048 hybrid contribution 2.028 -2.052 0.341 2.905 sum 4.710 13.202 13.070 19.165 Atomic orbital electron populations 1.20173 0.86867 1.03690 1.02295 1.22158 0.96728 0.90170 0.98107 1.77238 0.86001 1.22580 1.26900 1.48144 1.04860 1.03737 1.59594 1.21225 0.85047 0.96222 0.94645 1.21773 0.94631 1.00381 1.00430 1.23135 0.84344 0.78536 0.81041 1.90773 1.61872 1.54312 1.33160 1.84523 1.47445 1.65039 1.35750 1.20821 0.97081 0.84138 1.01508 1.20525 0.92496 0.98204 1.03982 1.19607 0.90785 0.96167 1.14962 1.20880 0.99524 0.90122 0.92924 1.68573 1.12349 1.22562 1.15826 1.24131 0.99937 0.89401 0.98744 1.19747 0.88131 0.90844 0.81064 1.86045 1.47456 1.87999 1.16874 1.21675 1.22953 0.99608 1.13198 0.91744 1.25050 0.95472 0.97944 0.94633 1.69357 1.31676 1.36720 1.16071 0.86447 0.79160 0.83912 0.77610 1.20522 1.19702 1.20975 1.24709 0.92676 0.97344 0.98991 0.91061 0.91284 0.89703 0.88082 0.87883 0.86575 0.86945 0.72773 0.89610 0.91883 0.89493 0.91264 0.93996 0.90778 0.91913 0.75735 0.91964 0.92464 0.91506 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.92 10.12 36.01 0.36 -0.56 16 2 C 0.10 1.51 7.22 -82.40 -0.59 0.92 16 3 N -0.31 -4.88 12.58 33.67 0.42 -4.46 16 4 N -0.38 -5.37 3.61 -57.14 -0.21 -5.57 16 5 C 0.15 1.62 5.35 -4.04 -0.02 1.60 16 6 C -0.13 -1.09 6.14 -27.88 -0.17 -1.26 16 7 C 0.49 4.12 8.33 36.01 0.30 4.42 16 8 O -0.51 -5.89 16.74 -18.75 -0.31 -6.20 16 9 O -0.52 -3.22 13.42 -39.24 -0.53 -3.75 16 10 C 0.09 1.35 6.93 -82.26 -0.57 0.77 16 11 C -0.09 -1.18 9.45 36.01 0.34 -0.84 16 12 C -0.20 -3.34 5.66 -105.05 -0.59 -3.93 16 13 C 0.09 1.60 4.74 -4.98 -0.02 1.57 16 14 N -0.47 -9.60 6.14 -239.69 -1.47 -11.08 16 15 C 0.01 0.14 7.33 -2.77 -0.02 0.12 16 16 C 0.24 6.06 1.44 -90.84 -0.13 5.93 16 17 O -0.57 -15.51 13.48 -35.23 -0.47 -15.98 16 18 C -0.54 -14.01 8.62 -34.44 -0.30 -14.31 16 19 H 0.06 1.65 7.81 -52.49 -0.41 1.24 16 20 C 0.07 1.84 5.40 -17.82 -0.10 1.74 16 21 N -0.90 -23.78 11.09 55.43 0.61 -23.16 16 22 Si 0.90 20.07 29.54 -169.99 -5.02 15.05 16 23 H -0.28 -6.14 7.11 56.52 0.40 -5.73 16 24 H -0.27 -6.04 7.11 56.52 0.40 -5.64 16 25 H -0.28 -6.33 7.11 56.52 0.40 -5.92 16 26 C -0.01 -0.18 7.11 -2.77 -0.02 -0.20 16 27 H 0.07 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.08 1.14 7.92 -51.93 -0.41 0.73 16 30 H 0.10 1.02 7.64 -51.93 -0.40 0.63 16 31 H 0.10 1.13 8.10 -51.93 -0.42 0.71 16 32 H 0.12 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.11 0.80 8.14 -51.93 -0.42 0.38 16 34 H 0.41 0.88 9.10 45.56 0.41 1.29 16 35 H 0.09 1.18 8.14 -51.93 -0.42 0.75 16 36 H 0.06 0.60 7.74 -51.93 -0.40 0.20 16 37 H 0.09 1.09 7.14 -51.93 -0.37 0.72 16 38 H 0.07 1.07 7.86 -51.93 -0.41 0.66 16 39 H 0.04 0.69 6.37 -51.93 -0.33 0.36 16 40 H 0.07 1.57 8.14 -51.93 -0.42 1.14 16 41 H 0.06 1.24 7.88 -51.93 -0.41 0.83 16 42 H 0.39 10.70 6.46 45.56 0.29 10.99 16 43 H 0.27 6.81 8.31 -40.82 -0.34 6.47 16 44 H 0.06 1.23 7.43 -51.93 -0.39 0.85 16 45 H 0.07 1.61 8.14 -51.93 -0.42 1.18 16 LS Contribution 378.49 15.07 5.70 5.70 Total: -1.00 -32.24 378.49 -8.14 -40.38 By element: Atomic # 1 Polarization: 18.42 SS G_CDS: -5.33 Total: 13.09 kcal Atomic # 6 Polarization: -2.49 SS G_CDS: -1.53 Total: -4.02 kcal Atomic # 7 Polarization: -43.64 SS G_CDS: -0.64 Total: -44.28 kcal Atomic # 8 Polarization: -24.61 SS G_CDS: -1.32 Total: -25.93 kcal Atomic # 14 Polarization: 20.07 SS G_CDS: -5.02 Total: 15.05 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -32.24 -8.14 -40.38 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610570454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.634 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.607 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds