Wall clock time and date at job start Tue Mar 31 2020 14:31:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30829 * 125.89641 * 2 1 4 4 N 1.40088 * 108.20298 * 180.02562 * 3 2 1 5 5 C 1.46496 * 126.03900 * 180.02562 * 4 3 2 6 6 C 1.53003 * 109.47320 * 90.01892 * 5 4 3 7 7 C 1.50703 * 109.47119 * 180.02562 * 6 5 4 8 8 O 1.20825 * 119.99706 * 0.02562 * 7 6 5 9 9 O 1.34222 * 120.00306 * 180.02562 * 7 6 5 10 10 C 1.34948 * 107.92478 * 359.75080 * 4 3 2 11 11 C 1.50706 * 126.12881 * 180.23742 * 10 4 3 12 12 C 1.35315 * 107.74694 * 0.39812 * 10 4 3 13 13 C 1.50699 * 126.04399 * 179.87171 * 12 10 4 14 14 N 1.46903 * 109.47066 * 269.71172 * 13 12 10 15 15 C 1.47957 * 111.00079 * 189.99834 * 14 13 12 16 16 C 1.53937 * 86.18208 * 222.41605 * 15 14 13 17 17 O 1.42896 * 113.73148 * 269.25755 * 16 15 14 18 18 C 1.50694 * 113.73443 * 138.07827 * 16 15 14 19 19 H 1.08000 * 120.00563 * 0.02562 * 18 16 15 20 20 C 1.37885 * 119.99902 * 180.02562 * 18 16 15 21 21 N 1.31516 * 119.99913 * 359.97438 * 20 18 16 22 22 Si 1.86798 * 119.99766 * 179.97438 * 20 18 16 23 23 H 1.48500 * 109.47353 * 269.99586 * 22 20 18 24 24 H 1.48501 * 109.47293 * 30.00037 * 22 20 18 25 25 H 1.48504 * 109.46680 * 149.99835 * 22 20 18 26 26 C 1.47958 * 111.00224 * 90.63512 * 14 13 12 27 27 H 1.09006 * 109.47099 * 269.97705 * 1 2 3 28 28 H 1.09000 * 109.47212 * 29.97491 * 1 2 3 29 29 H 1.08998 * 109.47382 * 149.98061 * 1 2 3 30 30 H 1.09001 * 109.47194 * 210.02242 * 5 4 3 31 31 H 1.09001 * 109.46898 * 330.01868 * 5 4 3 32 32 H 1.08991 * 109.47175 * 300.00226 * 6 5 4 33 33 H 1.09003 * 109.46852 * 60.00584 * 6 5 4 34 34 H 0.96694 * 117.00497 * 179.97438 * 9 7 6 35 35 H 1.09001 * 109.47219 * 270.18612 * 11 10 4 36 36 H 1.08997 * 109.46442 * 30.18473 * 11 10 4 37 37 H 1.08998 * 109.46621 * 150.18387 * 11 10 4 38 38 H 1.08993 * 109.47490 * 149.70925 * 13 12 10 39 39 H 1.09002 * 109.47190 * 29.70456 * 13 12 10 40 40 H 1.08999 * 113.76060 * 108.09601 * 15 14 13 41 41 H 1.09001 * 113.85944 * 336.74419 * 15 14 13 42 42 H 0.96709 * 114.00030 * 178.09403 * 17 16 15 43 43 H 0.97001 * 119.99646 * 179.97438 * 21 20 18 44 44 H 1.09003 * 113.76031 * 23.26533 * 26 14 13 45 45 H 1.08999 * 113.76380 * 251.90073 * 26 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2741 1.0598 0.0000 4 7 3.6087 0.6341 -0.0006 5 6 4.7899 1.5007 -0.0003 6 6 5.2017 1.8010 1.4424 7 6 6.4164 2.6930 1.4426 8 8 6.9025 3.0521 0.3963 9 8 6.9583 3.0886 2.6051 10 6 3.6142 -0.7154 0.0046 11 6 4.8350 -1.5990 0.0111 12 6 2.3271 -1.1331 -0.0005 13 6 1.8598 -2.5658 -0.0002 14 7 1.7077 -3.0315 -1.3851 15 6 1.0272 -4.3445 -1.4313 16 6 2.0662 -4.7300 -2.4997 17 8 1.6501 -4.4432 -3.8363 18 6 2.6104 -6.1262 -2.3407 19 1 2.2641 -6.7519 -1.5314 20 6 3.5506 -6.6049 -3.2285 21 7 3.9720 -5.8432 -4.2143 22 14 4.2257 -8.3354 -3.0309 23 1 5.4282 -8.3013 -2.1603 24 1 3.1911 -9.2027 -2.4123 25 1 4.5943 -8.8779 -4.3632 26 6 2.9614 -3.6417 -1.8801 27 1 -0.3633 -0.0004 1.0277 28 1 -0.3634 0.8902 -0.5134 29 1 -0.3634 -0.8898 -0.5141 30 1 5.6091 0.9986 -0.5150 31 1 4.5561 2.4336 -0.5131 32 1 4.3826 2.3031 1.9570 33 1 5.4356 0.8680 1.9552 34 1 7.7368 3.6600 2.5547 35 1 5.1339 -1.8133 -1.0151 36 1 5.6488 -1.0904 0.5278 37 1 4.6052 -2.5323 0.5251 38 1 0.9013 -2.6352 0.5138 39 1 2.5935 -3.1871 0.5135 40 1 0.0058 -4.2968 -1.8089 41 1 1.1128 -4.9182 -0.5084 42 1 2.3116 -4.6569 -4.5087 43 1 4.6337 -6.1798 -4.8385 44 1 3.6141 -4.0085 -1.0878 45 1 3.4856 -3.0324 -2.6165 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001610570454.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:31:26 Heat of formation + Delta-G solvation = -59.945124 kcal Electronic energy + Delta-G solvation = -27742.559661 eV Core-core repulsion = 23761.732651 eV Total energy + Delta-G solvation = -3980.827009 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.43487 -41.31252 -40.51017 -37.32580 -36.40117 -35.77171 -34.06479 -33.61378 -32.59489 -30.31822 -29.04602 -28.29181 -26.83779 -26.69976 -25.27999 -23.53949 -22.16345 -20.61029 -20.33840 -20.31836 -19.19859 -19.10799 -18.00893 -17.28879 -17.11919 -16.83185 -16.76889 -16.14936 -15.96880 -15.60783 -15.39591 -14.85536 -14.69458 -14.46672 -14.20845 -14.06035 -13.84436 -13.82553 -13.58960 -13.38597 -13.28427 -13.13518 -12.90105 -12.80066 -12.68360 -12.63767 -12.55676 -12.43811 -12.26881 -12.11516 -11.80861 -11.76571 -11.34904 -11.14264 -10.59371 -10.07071 -9.99257 -9.43616 -9.18172 -8.19147 -6.36968 0.83904 1.08191 1.33447 1.43653 1.46812 1.56275 1.76723 2.21320 2.40578 3.02073 3.35327 3.45820 3.49016 3.70902 3.90884 4.06071 4.13415 4.14231 4.18172 4.36980 4.38035 4.46699 4.48660 4.56649 4.58364 4.65042 4.69666 4.70847 4.84388 4.85715 4.97473 5.01496 5.10276 5.16122 5.24052 5.28198 5.48364 5.52533 5.67674 5.80834 5.81343 6.05675 6.10487 6.48134 6.68611 6.79014 6.89500 7.35923 7.59582 8.84800 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.014640 B = 0.003087 C = 0.002707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1912.123206 B = 9069.140645 C =10340.906482 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.083 3.917 3 N -0.327 5.327 4 N -0.377 5.377 5 C 0.145 3.855 6 C -0.123 4.123 7 C 0.499 3.501 8 O -0.548 6.548 9 O -0.509 6.509 10 C 0.092 3.908 11 C -0.092 4.092 12 C -0.233 4.233 13 C 0.101 3.899 14 N -0.476 5.476 15 C 0.017 3.983 16 C 0.214 3.786 17 O -0.588 6.588 18 C -0.556 4.556 19 H 0.065 0.935 20 C 0.027 3.973 21 N -0.920 5.920 22 Si 0.965 3.035 23 H -0.271 1.271 24 H -0.270 1.270 25 H -0.284 1.284 26 C 0.011 3.989 27 H 0.094 0.906 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.107 0.893 31 H 0.097 0.903 32 H 0.121 0.879 33 H 0.129 0.871 34 H 0.432 0.568 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.088 0.912 38 H 0.085 0.915 39 H 0.048 0.952 40 H 0.072 0.928 41 H 0.081 0.919 42 H 0.381 0.619 43 H 0.272 0.728 44 H 0.064 0.936 45 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.108 13.225 15.234 20.588 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.083 4.083 3 N -0.149 5.149 4 N -0.159 5.159 5 C 0.024 3.976 6 C -0.162 4.162 7 C 0.342 3.658 8 O -0.439 6.439 9 O -0.323 6.323 10 C -0.036 4.036 11 C -0.150 4.150 12 C -0.244 4.244 13 C -0.028 4.028 14 N -0.199 5.199 15 C -0.112 4.112 16 C 0.173 3.827 17 O -0.399 6.399 18 C -0.594 4.594 19 H 0.084 0.916 20 C -0.173 4.173 21 N -0.561 5.561 22 Si 0.790 3.210 23 H -0.197 1.197 24 H -0.194 1.194 25 H -0.210 1.210 26 C -0.119 4.119 27 H 0.112 0.888 28 H 0.092 0.908 29 H 0.095 0.905 30 H 0.125 0.875 31 H 0.115 0.885 32 H 0.139 0.861 33 H 0.147 0.853 34 H 0.294 0.706 35 H 0.090 0.910 36 H 0.113 0.887 37 H 0.107 0.893 38 H 0.103 0.897 39 H 0.066 0.934 40 H 0.091 0.909 41 H 0.099 0.901 42 H 0.234 0.766 43 H 0.082 0.918 44 H 0.082 0.918 45 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 3.357 15.228 14.806 21.503 hybrid contribution 1.852 -1.945 -0.266 2.699 sum 5.208 13.282 14.540 20.371 Atomic orbital electron populations 1.20220 0.85321 1.03459 1.03711 1.22581 0.97967 0.89977 0.97776 1.77192 0.86892 1.23045 1.27748 1.48375 1.05088 1.03897 1.58589 1.21410 0.84046 0.95511 0.96651 1.21626 0.94759 1.01229 0.98565 1.23030 0.83977 0.77878 0.80915 1.90774 1.62968 1.55723 1.34424 1.84477 1.48315 1.65165 1.34392 1.21154 0.97490 0.84712 1.00209 1.20571 0.92668 0.98284 1.03511 1.19689 0.91685 0.95957 1.17097 1.20844 1.00658 0.90553 0.90723 1.68497 1.10870 1.21860 1.18648 1.24058 0.99023 0.89935 0.98153 1.20192 0.90542 0.91284 0.80699 1.86030 1.47658 1.88195 1.17997 1.21937 1.23399 1.00462 1.13568 0.91650 1.25788 0.95694 1.01453 0.94331 1.69444 1.31944 1.38149 1.16555 0.85458 0.78610 0.79479 0.77463 1.19675 1.19433 1.21002 1.24392 0.92947 0.96095 0.98437 0.88786 0.90833 0.90507 0.87488 0.88511 0.86106 0.85349 0.70564 0.91049 0.88652 0.89346 0.89683 0.93369 0.90906 0.90138 0.76574 0.91846 0.91802 0.94013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.69 10.12 71.24 0.72 -0.96 16 2 C 0.08 2.57 7.22 43.11 0.31 2.88 16 3 N -0.33 -10.17 12.58 -47.38 -0.60 -10.77 16 4 N -0.38 -10.23 3.61 -334.69 -1.21 -11.44 16 5 C 0.15 2.94 5.35 86.38 0.46 3.40 16 6 C -0.12 -1.76 6.14 29.85 0.18 -1.58 16 7 C 0.50 7.49 8.33 71.24 0.59 8.08 16 8 O -0.55 -11.97 16.74 21.97 0.37 -11.60 16 9 O -0.51 -5.10 13.42 -51.34 -0.69 -5.78 16 10 C 0.09 2.62 6.93 41.41 0.29 2.91 16 11 C -0.09 -2.18 9.45 71.24 0.67 -1.50 16 12 C -0.23 -7.38 5.66 -20.14 -0.11 -7.49 16 13 C 0.10 3.27 4.74 85.56 0.41 3.67 16 14 N -0.48 -19.21 6.14 -915.45 -5.62 -24.83 16 15 C 0.02 0.71 7.33 86.41 0.63 1.34 16 16 C 0.21 10.69 1.44 -10.89 -0.02 10.68 16 17 O -0.59 -32.59 13.48 -148.98 -2.01 -34.60 16 18 C -0.56 -28.97 8.62 25.60 0.22 -28.75 16 19 H 0.07 3.30 7.81 -2.91 -0.02 3.28 16 20 C 0.03 1.39 5.40 84.66 0.46 1.84 16 21 N -0.92 -49.20 11.09 21.45 0.24 -48.97 16 22 Si 0.96 40.80 29.54 68.60 2.03 42.82 16 23 H -0.27 -11.06 7.11 99.48 0.71 -10.36 16 24 H -0.27 -11.20 7.11 99.48 0.71 -10.50 16 25 H -0.28 -11.95 7.11 99.48 0.71 -11.24 16 26 C 0.01 0.48 7.11 86.41 0.61 1.10 16 27 H 0.09 1.84 8.14 -2.38 -0.02 1.82 16 28 H 0.07 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.08 2.00 7.92 -2.39 -0.02 1.98 16 30 H 0.11 2.04 7.64 -2.39 -0.02 2.02 16 31 H 0.10 2.09 8.10 -2.39 -0.02 2.07 16 32 H 0.12 1.67 8.14 -2.39 -0.02 1.65 16 33 H 0.13 1.45 8.14 -2.39 -0.02 1.43 16 34 H 0.43 0.79 9.10 -74.06 -0.67 0.12 16 35 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 36 H 0.09 1.58 7.74 -2.39 -0.02 1.56 16 37 H 0.09 2.06 7.14 -2.39 -0.02 2.04 16 38 H 0.08 2.46 7.86 -2.39 -0.02 2.44 16 39 H 0.05 1.50 6.37 -2.39 -0.02 1.48 16 40 H 0.07 3.04 8.14 -2.39 -0.02 3.02 16 41 H 0.08 3.05 7.88 -2.39 -0.02 3.03 16 42 H 0.38 21.69 6.46 -74.05 -0.48 21.21 16 43 H 0.27 13.78 8.31 -92.71 -0.77 13.01 16 44 H 0.06 2.73 7.43 -2.39 -0.02 2.72 16 45 H 0.04 2.06 8.14 -2.39 -0.02 2.04 16 Total: -1.00 -68.92 378.49 -2.19 -71.11 By element: Atomic # 1 Polarization: 38.56 SS G_CDS: -0.12 Total: 38.44 kcal Atomic # 6 Polarization: -9.81 SS G_CDS: 5.43 Total: -4.38 kcal Atomic # 7 Polarization: -88.81 SS G_CDS: -7.19 Total: -96.01 kcal Atomic # 8 Polarization: -49.65 SS G_CDS: -2.33 Total: -51.98 kcal Atomic # 14 Polarization: 40.80 SS G_CDS: 2.03 Total: 42.82 kcal Total: -68.92 -2.19 -71.11 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001610570454.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.164 kcal (2) G-P(sol) polarization free energy of solvation -68.922 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.187 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.109 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.945 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds