Wall clock time and date at job start Tue Mar 31 2020 13:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35981 * 116.99750 * 2 1 4 4 C 1.38719 * 120.00285 * 0.02813 * 3 2 1 5 5 C 1.38109 * 120.00010 * 179.69855 * 4 3 2 6 6 C 1.38724 * 119.99881 * 0.55266 * 5 4 3 7 7 O 1.35982 * 119.99688 * 179.72026 * 6 5 4 8 8 C 1.42903 * 117.00424 * 359.72473 * 7 6 5 9 9 C 1.38674 * 120.00020 * 359.44200 * 6 5 4 10 10 C 1.50696 * 119.99890 * 180.25819 * 9 6 5 11 11 H 1.08999 * 109.46930 * 324.99918 * 10 9 6 12 12 O 1.42905 * 109.46968 * 204.99975 * 10 9 6 13 13 C 1.53003 * 109.47323 * 85.00116 * 10 9 6 14 14 N 1.46899 * 109.46986 * 184.99657 * 13 10 9 15 15 C 1.47480 * 110.99808 * 74.03394 * 14 13 10 16 16 C 1.53511 * 87.93304 * 138.70102 * 15 14 13 17 17 O 1.42895 * 114.16993 * 87.62151 * 16 15 14 18 18 C 1.50701 * 114.34135 * 220.31382 * 16 15 14 19 19 H 1.08005 * 120.00249 * 93.91952 * 18 16 15 20 20 C 1.37877 * 120.00080 * 273.92408 * 18 16 15 21 21 N 1.31516 * 119.99978 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99794 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47287 * 60.00378 * 22 20 18 24 24 H 1.48505 * 109.46968 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47588 * 299.99675 * 22 20 18 26 26 C 1.47480 * 110.99641 * 169.99692 * 14 13 10 27 27 C 1.38153 * 119.99902 * 0.28092 * 9 6 5 28 28 H 1.08998 * 109.46662 * 299.99903 * 1 2 3 29 29 H 1.09004 * 109.46923 * 59.99710 * 1 2 3 30 30 H 1.08998 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00119 * 359.94566 * 4 3 2 32 32 H 1.08001 * 120.00093 * 180.28655 * 5 4 3 33 33 H 1.09002 * 109.47382 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.46938 * 59.99850 * 8 7 6 35 35 H 1.09004 * 109.46926 * 299.99971 * 8 7 6 36 36 H 0.96693 * 114.00267 * 300.00501 * 12 10 9 37 37 H 1.08996 * 109.46977 * 304.99896 * 13 10 9 38 38 H 1.08996 * 109.46953 * 64.99716 * 13 10 9 39 39 H 1.09002 * 113.47732 * 253.46735 * 15 14 13 40 40 H 1.08995 * 113.47802 * 23.92768 * 15 14 13 41 41 H 0.96704 * 114.00036 * 86.16750 * 17 16 15 42 42 H 0.97000 * 119.99723 * 180.02562 * 21 20 18 43 43 H 1.08997 * 113.48240 * 336.06912 * 26 14 13 44 44 H 1.09005 * 113.47331 * 106.52870 * 26 14 13 45 45 H 1.08000 * 119.99786 * 180.02562 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 0.0006 5 6 1.9178 3.6056 0.0069 6 6 3.3032 3.6782 0.0010 7 8 3.9204 4.8898 0.0015 8 6 3.0805 6.0460 0.0020 9 6 4.0584 2.5152 0.0005 10 6 5.5633 2.5941 0.0001 11 1 5.8819 3.4539 -0.5893 12 8 6.1028 1.3997 -0.5697 13 6 6.0666 2.7461 1.4369 14 7 7.5223 2.9429 1.4277 15 6 7.8690 4.3013 0.9699 16 6 8.9366 4.3402 2.0723 17 8 10.2018 3.8037 1.6808 18 6 9.0461 5.6638 2.7845 19 1 8.4984 5.8314 3.7001 20 6 9.8456 6.6609 2.2671 21 7 10.5129 6.4568 1.1524 22 14 9.9808 8.3018 3.1496 23 1 10.5170 8.0857 4.5174 24 1 10.8960 9.1956 2.3953 25 1 8.6375 8.9287 3.2378 26 6 8.0119 3.3289 2.7642 27 6 3.4312 1.2842 0.0000 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2123 2.3185 0.0002 32 1 1.3296 4.5113 0.0120 33 1 3.6983 6.9440 0.0028 34 1 2.4513 6.0375 0.8921 35 1 2.4511 6.0382 -0.8880 36 1 5.8595 0.5930 -0.0955 37 1 5.5864 3.6076 1.9009 38 1 5.8252 1.8467 2.0035 39 1 8.2841 4.3273 -0.0376 40 1 7.0681 5.0261 1.1152 41 1 10.7823 4.4429 1.2453 42 1 11.0757 7.1582 0.7887 43 1 7.2491 3.7942 3.3885 44 1 8.5481 2.5306 3.2774 45 1 4.0195 0.3785 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647231829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:11 Heat of formation + Delta-G solvation = -99.515808 kcal Electronic energy + Delta-G solvation = -28116.728296 eV Core-core repulsion = 24101.892622 eV Total energy + Delta-G solvation = -4014.835674 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.78288 -39.29633 -38.98636 -37.38286 -35.86389 -34.11194 -32.00324 -31.74992 -30.33644 -29.18323 -27.60579 -27.03951 -26.43097 -24.90295 -24.29624 -22.26632 -21.78034 -20.77128 -18.64702 -18.47313 -17.71174 -17.26395 -17.02665 -16.07985 -15.99045 -15.65640 -15.18596 -15.05818 -14.91839 -14.78442 -14.54876 -14.10508 -13.89139 -13.74458 -13.08443 -12.98055 -12.86210 -12.49472 -12.36838 -12.06302 -11.85086 -11.83002 -11.74118 -11.38390 -11.23423 -11.07713 -10.88943 -10.80024 -10.65536 -10.54802 -10.31739 -9.92157 -9.72909 -9.18520 -9.00166 -8.58748 -8.07865 -7.84340 -7.77356 -6.21532 -4.31219 1.04811 1.31873 3.04717 3.22778 3.26717 3.28380 3.30625 3.51954 4.27955 4.42976 4.51488 4.62767 4.77685 4.85079 4.85644 4.96182 5.00269 5.06911 5.12474 5.18100 5.26514 5.30280 5.38140 5.44807 5.49058 5.63533 5.82197 6.00507 6.04164 6.08748 6.11475 6.19474 6.28195 6.40543 6.46905 6.57765 6.77646 7.10885 7.16015 7.25414 7.34835 7.43371 7.82189 7.89902 8.03199 8.13269 8.70328 9.38337 9.77052 10.84349 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018725 B = 0.003223 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.943064 B = 8686.692988 C = 9642.857127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.091 3.909 4 C -0.172 4.172 5 C -0.169 4.169 6 C 0.104 3.896 7 O -0.307 6.307 8 C 0.028 3.972 9 C -0.102 4.102 10 C 0.165 3.835 11 H 0.115 0.885 12 O -0.540 6.540 13 C -0.003 4.003 14 N -0.459 5.459 15 C -0.020 4.020 16 C 0.248 3.752 17 O -0.570 6.570 18 C -0.534 4.534 19 H 0.064 0.936 20 C 0.071 3.929 21 N -0.897 5.897 22 Si 0.904 3.096 23 H -0.275 1.275 24 H -0.285 1.285 25 H -0.276 1.276 26 C 0.001 3.999 27 C -0.105 4.105 28 H 0.053 0.947 29 H 0.053 0.947 30 H 0.098 0.902 31 H 0.129 0.871 32 H 0.131 0.869 33 H 0.103 0.897 34 H 0.053 0.947 35 H 0.052 0.948 36 H 0.367 0.633 37 H 0.047 0.953 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.059 0.941 41 H 0.389 0.611 42 H 0.272 0.728 43 H 0.061 0.939 44 H 0.070 0.930 45 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.186 -6.024 -2.878 22.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.232 6.232 3 C 0.047 3.953 4 C -0.191 4.191 5 C -0.188 4.188 6 C 0.059 3.941 7 O -0.220 6.220 8 C -0.067 4.067 9 C -0.103 4.103 10 C 0.105 3.895 11 H 0.132 0.868 12 O -0.345 6.345 13 C -0.132 4.132 14 N -0.181 5.181 15 C -0.149 4.149 16 C 0.207 3.793 17 O -0.382 6.382 18 C -0.572 4.572 19 H 0.083 0.917 20 C -0.131 4.131 21 N -0.538 5.538 22 Si 0.731 3.269 23 H -0.200 1.200 24 H -0.210 1.210 25 H -0.201 1.201 26 C -0.127 4.127 27 C -0.123 4.123 28 H 0.072 0.928 29 H 0.071 0.929 30 H 0.117 0.883 31 H 0.146 0.854 32 H 0.149 0.851 33 H 0.121 0.879 34 H 0.072 0.928 35 H 0.071 0.929 36 H 0.214 0.786 37 H 0.065 0.935 38 H 0.086 0.914 39 H 0.086 0.914 40 H 0.077 0.923 41 H 0.245 0.755 42 H 0.082 0.918 43 H 0.079 0.921 44 H 0.088 0.912 45 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -20.513 -6.794 -3.526 21.895 hybrid contribution -1.279 2.075 0.971 2.623 sum -21.792 -4.720 -2.555 22.443 Atomic orbital electron populations 1.23014 0.78727 1.03786 1.01120 1.86080 1.21036 1.26678 1.89368 1.18778 0.92037 0.84176 1.00335 1.20969 0.99794 0.91689 1.06660 1.20993 0.93115 0.98400 1.06291 1.18685 0.90632 0.85513 0.99295 1.86188 1.35209 1.11964 1.88651 1.23070 0.95952 0.86874 1.00807 1.19898 0.97441 0.90192 1.02812 1.20583 0.84956 0.89167 0.94799 0.86786 1.86679 1.75996 1.15663 1.56150 1.23256 0.93025 1.01205 0.95706 1.69005 1.08954 1.27512 1.12640 1.24666 1.00313 0.87701 1.02254 1.19331 0.81572 0.89270 0.89161 1.86032 1.27936 1.43116 1.81110 1.21546 1.28241 0.97528 1.09882 0.91739 1.25059 0.94528 0.99079 0.94452 1.69297 1.29826 1.34820 1.19841 0.86472 0.78074 0.82616 0.79757 1.19991 1.21018 1.20131 1.24087 0.97945 0.98679 0.92021 1.19950 0.91293 0.97482 1.03611 0.92844 0.92865 0.88339 0.85352 0.85104 0.87868 0.92839 0.92918 0.78619 0.93507 0.91450 0.91363 0.92257 0.75494 0.91807 0.92074 0.91179 0.84383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.81 101.05 0.99 1.18 16 2 O -0.32 -3.46 10.50 -19.68 -0.21 -3.67 16 3 C 0.09 1.09 6.69 -39.24 -0.26 0.83 16 4 C -0.17 -1.83 9.03 -39.45 -0.36 -2.18 16 5 C -0.17 -1.91 9.03 -39.45 -0.36 -2.27 16 6 C 0.10 1.44 6.66 -39.24 -0.26 1.18 16 7 O -0.31 -4.43 9.63 -19.68 -0.19 -4.62 16 8 C 0.03 0.28 9.81 101.05 0.99 1.27 16 9 C -0.10 -1.48 5.08 -104.49 -0.53 -2.01 16 10 C 0.16 2.75 3.01 -27.88 -0.08 2.67 16 11 H 0.11 2.17 7.09 -51.93 -0.37 1.80 16 12 O -0.54 -9.01 12.94 -35.23 -0.46 -9.46 16 13 C 0.00 -0.05 4.44 -3.82 -0.02 -0.06 16 14 N -0.46 -10.04 6.36 -244.67 -1.56 -11.60 16 15 C -0.02 -0.48 6.36 -7.56 -0.05 -0.53 16 16 C 0.25 6.50 1.57 -91.24 -0.14 6.35 16 17 O -0.57 -16.00 13.53 -35.23 -0.48 -16.48 16 18 C -0.53 -14.47 8.69 -34.44 -0.30 -14.77 16 19 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 20 C 0.07 1.89 5.39 -17.82 -0.10 1.79 16 21 N -0.90 -24.46 11.02 55.43 0.61 -23.85 16 22 Si 0.90 20.51 29.54 -169.99 -5.02 15.49 16 23 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 24 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 25 H -0.28 -6.16 7.11 56.52 0.40 -5.76 16 26 C 0.00 0.03 7.12 -7.56 -0.05 -0.02 16 27 C -0.10 -1.35 9.24 -39.45 -0.36 -1.72 16 28 H 0.05 0.31 7.66 -51.93 -0.40 -0.09 16 29 H 0.05 0.30 7.66 -51.93 -0.40 -0.09 16 30 H 0.10 0.46 8.14 -51.93 -0.42 0.03 16 31 H 0.13 1.00 6.29 -52.49 -0.33 0.67 16 32 H 0.13 1.15 6.29 -52.49 -0.33 0.82 16 33 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.05 0.46 7.65 -51.93 -0.40 0.06 16 35 H 0.05 0.43 7.67 -51.93 -0.40 0.03 16 36 H 0.37 4.69 7.32 45.56 0.33 5.03 16 37 H 0.05 0.86 7.56 -51.93 -0.39 0.47 16 38 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 39 H 0.07 1.75 8.14 -51.93 -0.42 1.33 16 40 H 0.06 1.41 7.66 -51.93 -0.40 1.01 16 41 H 0.39 11.07 6.33 45.56 0.29 11.36 16 42 H 0.27 7.01 8.31 -40.82 -0.34 6.68 16 43 H 0.06 1.31 7.73 -51.93 -0.40 0.91 16 44 H 0.07 1.58 8.14 -51.93 -0.42 1.16 16 45 H 0.14 1.57 6.40 -52.49 -0.34 1.24 16 LS Contribution 366.92 15.07 5.53 5.53 Total: -1.00 -31.75 366.92 -7.84 -39.59 By element: Atomic # 1 Polarization: 22.53 SS G_CDS: -5.18 Total: 17.34 kcal Atomic # 6 Polarization: -7.39 SS G_CDS: -0.89 Total: -8.28 kcal Atomic # 7 Polarization: -34.50 SS G_CDS: -0.95 Total: -35.45 kcal Atomic # 8 Polarization: -32.90 SS G_CDS: -1.33 Total: -34.23 kcal Atomic # 14 Polarization: 20.51 SS G_CDS: -5.02 Total: 15.49 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -31.75 -7.84 -39.59 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647231829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.926 kcal (2) G-P(sol) polarization free energy of solvation -31.750 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.676 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.840 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.590 kcal (6) G-S(sol) free energy of system = (1) + (5) -99.516 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds