Wall clock time and date at job start Tue Mar 31 2020 13:54:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42906 * 1 3 3 C 1.35981 * 116.99750 * 2 1 4 4 C 1.38719 * 120.00285 * 0.02813 * 3 2 1 5 5 C 1.38109 * 120.00010 * 179.69855 * 4 3 2 6 6 C 1.38724 * 119.99881 * 0.55266 * 5 4 3 7 7 O 1.35982 * 119.99688 * 179.72026 * 6 5 4 8 8 C 1.42903 * 117.00424 * 359.72473 * 7 6 5 9 9 C 1.38674 * 120.00020 * 359.44200 * 6 5 4 10 10 C 1.50696 * 119.99890 * 180.25819 * 9 6 5 11 11 H 1.08999 * 109.46930 * 324.99918 * 10 9 6 12 12 O 1.42905 * 109.46968 * 204.99975 * 10 9 6 13 13 C 1.53003 * 109.47323 * 85.00116 * 10 9 6 14 14 N 1.46899 * 109.46986 * 184.99657 * 13 10 9 15 15 C 1.47480 * 110.99808 * 74.03394 * 14 13 10 16 16 C 1.53511 * 87.93304 * 138.70102 * 15 14 13 17 17 O 1.42895 * 114.16993 * 87.62151 * 16 15 14 18 18 C 1.50701 * 114.34135 * 220.31382 * 16 15 14 19 19 H 1.08005 * 120.00249 * 93.91952 * 18 16 15 20 20 C 1.37877 * 120.00080 * 273.92408 * 18 16 15 21 21 N 1.31516 * 119.99978 * 359.97438 * 20 18 16 22 22 Si 1.86803 * 119.99794 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47287 * 60.00378 * 22 20 18 24 24 H 1.48505 * 109.46968 * 179.97438 * 22 20 18 25 25 H 1.48494 * 109.47588 * 299.99675 * 22 20 18 26 26 C 1.47480 * 110.99641 * 169.99692 * 14 13 10 27 27 C 1.38153 * 119.99902 * 0.28092 * 9 6 5 28 28 H 1.08998 * 109.46662 * 299.99903 * 1 2 3 29 29 H 1.09004 * 109.46923 * 59.99710 * 1 2 3 30 30 H 1.08998 * 109.47059 * 179.97438 * 1 2 3 31 31 H 1.08001 * 120.00119 * 359.94566 * 4 3 2 32 32 H 1.08001 * 120.00093 * 180.28655 * 5 4 3 33 33 H 1.09002 * 109.47382 * 179.97438 * 8 7 6 34 34 H 1.09001 * 109.46938 * 59.99850 * 8 7 6 35 35 H 1.09004 * 109.46926 * 299.99971 * 8 7 6 36 36 H 0.96693 * 114.00267 * 300.00501 * 12 10 9 37 37 H 1.08996 * 109.46977 * 304.99896 * 13 10 9 38 38 H 1.08996 * 109.46953 * 64.99716 * 13 10 9 39 39 H 1.09002 * 113.47732 * 253.46735 * 15 14 13 40 40 H 1.08995 * 113.47802 * 23.92768 * 15 14 13 41 41 H 0.96704 * 114.00036 * 86.16750 * 17 16 15 42 42 H 0.97000 * 119.99723 * 180.02562 * 21 20 18 43 43 H 1.08997 * 113.48240 * 336.06912 * 26 14 13 44 44 H 1.09005 * 113.47331 * 106.52870 * 26 14 13 45 45 H 1.08000 * 119.99786 * 180.02562 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 1.2908 2.3750 0.0006 5 6 1.9178 3.6056 0.0069 6 6 3.3032 3.6782 0.0010 7 8 3.9204 4.8898 0.0015 8 6 3.0805 6.0460 0.0020 9 6 4.0584 2.5152 0.0005 10 6 5.5633 2.5941 0.0001 11 1 5.8819 3.4539 -0.5893 12 8 6.1028 1.3997 -0.5697 13 6 6.0666 2.7461 1.4369 14 7 7.5223 2.9429 1.4277 15 6 7.8690 4.3013 0.9699 16 6 8.9366 4.3402 2.0723 17 8 10.2018 3.8037 1.6808 18 6 9.0461 5.6638 2.7845 19 1 8.4984 5.8314 3.7001 20 6 9.8456 6.6609 2.2671 21 7 10.5129 6.4568 1.1524 22 14 9.9808 8.3018 3.1496 23 1 10.5170 8.0857 4.5174 24 1 10.8960 9.1956 2.3953 25 1 8.6375 8.9287 3.2378 26 6 8.0119 3.3289 2.7642 27 6 3.4312 1.2842 0.0000 28 1 -0.3632 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 0.2123 2.3185 0.0002 32 1 1.3296 4.5113 0.0120 33 1 3.6983 6.9440 0.0028 34 1 2.4513 6.0375 0.8921 35 1 2.4511 6.0382 -0.8880 36 1 5.8595 0.5930 -0.0955 37 1 5.5864 3.6076 1.9009 38 1 5.8252 1.8467 2.0035 39 1 8.2841 4.3273 -0.0376 40 1 7.0681 5.0261 1.1152 41 1 10.7823 4.4429 1.2453 42 1 11.0757 7.1582 0.7887 43 1 7.2491 3.7942 3.3885 44 1 8.5481 2.5306 3.2774 45 1 4.0195 0.3785 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647231829.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:11 Heat of formation + Delta-G solvation = -126.804810 kcal Electronic energy + Delta-G solvation = -28117.911636 eV Core-core repulsion = 24101.892622 eV Total energy + Delta-G solvation = -4016.019014 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -41.76137 -40.91607 -39.93376 -38.62666 -36.89574 -36.07373 -34.08956 -32.87273 -31.39049 -30.49662 -28.47607 -28.03900 -27.76546 -26.77602 -25.85930 -23.40516 -22.96817 -21.98756 -20.50674 -19.57413 -19.21835 -18.55311 -17.97306 -17.38067 -17.06523 -16.81526 -16.68680 -16.42864 -16.41232 -15.86735 -15.68257 -15.55936 -15.30012 -15.23209 -14.39286 -14.00864 -13.87179 -13.78134 -13.71740 -13.58077 -13.35242 -13.13397 -12.85749 -12.72202 -12.61236 -12.52074 -12.46646 -12.27525 -12.18985 -11.90235 -11.81401 -11.35779 -11.13626 -11.01105 -10.62321 -10.09557 -9.96889 -9.63856 -8.74355 -8.23843 -6.42307 0.12820 0.40208 1.43107 1.45069 1.53523 2.31011 2.37751 2.43405 2.58811 2.96023 3.15470 3.42515 3.62431 3.71792 3.87526 4.00866 4.09779 4.15202 4.20157 4.26107 4.30213 4.37367 4.37885 4.43032 4.44639 4.48385 4.55296 4.62963 4.70052 4.73202 4.76417 4.81988 4.90567 5.12636 5.15154 5.19348 5.27192 5.39318 5.46355 5.52008 5.75860 5.97227 6.30458 6.32397 6.50307 6.63252 6.80208 7.30553 7.57053 8.81436 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.018725 B = 0.003223 C = 0.002903 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1494.943064 B = 8686.692988 C = 9642.857127 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.334 6.334 3 C 0.087 3.913 4 C -0.163 4.163 5 C -0.165 4.165 6 C 0.086 3.914 7 O -0.339 6.339 8 C 0.019 3.981 9 C -0.121 4.121 10 C 0.176 3.824 11 H 0.082 0.918 12 O -0.557 6.557 13 C 0.004 3.996 14 N -0.464 5.464 15 C -0.004 4.004 16 C 0.221 3.779 17 O -0.583 6.583 18 C -0.558 4.558 19 H 0.067 0.933 20 C 0.025 3.975 21 N -0.920 5.920 22 Si 0.971 3.029 23 H -0.271 1.271 24 H -0.280 1.280 25 H -0.268 1.268 26 C 0.011 3.989 27 C -0.114 4.114 28 H 0.065 0.935 29 H 0.065 0.935 30 H 0.117 0.883 31 H 0.161 0.839 32 H 0.158 0.842 33 H 0.104 0.896 34 H 0.069 0.931 35 H 0.071 0.929 36 H 0.383 0.617 37 H 0.043 0.957 38 H 0.088 0.912 39 H 0.042 0.958 40 H 0.057 0.943 41 H 0.383 0.617 42 H 0.275 0.725 43 H 0.076 0.924 44 H 0.072 0.928 45 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.071 -5.891 -2.146 24.875 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.248 6.248 3 C 0.042 3.958 4 C -0.182 4.182 5 C -0.183 4.183 6 C 0.041 3.959 7 O -0.254 6.254 8 C -0.075 4.075 9 C -0.123 4.123 10 C 0.117 3.883 11 H 0.100 0.900 12 O -0.364 6.364 13 C -0.125 4.125 14 N -0.186 5.186 15 C -0.134 4.134 16 C 0.180 3.820 17 O -0.395 6.395 18 C -0.596 4.596 19 H 0.085 0.915 20 C -0.175 4.175 21 N -0.562 5.562 22 Si 0.796 3.204 23 H -0.196 1.196 24 H -0.205 1.205 25 H -0.192 1.192 26 C -0.117 4.117 27 C -0.133 4.133 28 H 0.084 0.916 29 H 0.083 0.917 30 H 0.135 0.865 31 H 0.179 0.821 32 H 0.176 0.824 33 H 0.122 0.878 34 H 0.088 0.912 35 H 0.090 0.910 36 H 0.232 0.768 37 H 0.061 0.939 38 H 0.106 0.894 39 H 0.060 0.940 40 H 0.076 0.924 41 H 0.238 0.762 42 H 0.084 0.916 43 H 0.094 0.906 44 H 0.090 0.910 45 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges -23.427 -6.687 -2.787 24.522 hybrid contribution -0.486 1.946 0.703 2.125 sum -23.914 -4.741 -2.084 24.468 Atomic orbital electron populations 1.23347 0.76472 1.05583 1.02257 1.86066 1.23391 1.26207 1.89174 1.18879 0.91853 0.85174 0.99924 1.21350 1.01401 0.90798 1.04619 1.21291 0.92123 0.99882 1.05023 1.18910 0.91790 0.85128 1.00119 1.86144 1.37197 1.13089 1.88950 1.23309 0.96129 0.85561 1.02488 1.19658 0.95761 0.91452 1.05443 1.20211 0.86913 0.88180 0.93021 0.89986 1.86626 1.76498 1.16470 1.56793 1.23269 0.90235 1.01836 0.97203 1.68906 1.12018 1.25784 1.11880 1.24369 0.99696 0.89157 1.00190 1.19710 0.81324 0.90373 0.90581 1.86010 1.28926 1.43366 1.81218 1.21802 1.29070 0.98380 1.10308 0.91519 1.25875 0.93977 1.02557 0.95064 1.69385 1.30035 1.35875 1.20855 0.85412 0.78343 0.78190 0.78498 1.19598 1.20527 1.19244 1.23995 0.97471 0.97866 0.92410 1.20048 0.92319 0.97104 1.03787 0.91616 0.91666 0.86452 0.82110 0.82423 0.87792 0.91230 0.91025 0.76755 0.93875 0.89380 0.93955 0.92442 0.76208 0.91553 0.90630 0.90977 0.83704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 9.81 113.37 1.11 1.29 16 2 O -0.33 -6.49 10.50 -93.34 -0.98 -7.47 16 3 C 0.09 1.89 6.69 22.49 0.15 2.04 16 4 C -0.16 -2.94 9.03 22.35 0.20 -2.74 16 5 C -0.16 -3.30 9.03 22.36 0.20 -3.10 16 6 C 0.09 2.32 6.66 22.49 0.15 2.47 16 7 O -0.34 -9.83 9.63 -93.34 -0.90 -10.72 16 8 C 0.02 0.37 9.81 113.37 1.11 1.48 16 9 C -0.12 -3.51 5.08 -19.78 -0.10 -3.61 16 10 C 0.18 6.06 3.01 29.85 0.09 6.15 16 11 H 0.08 3.31 7.09 -2.39 -0.02 3.30 16 12 O -0.56 -18.86 12.94 -148.98 -1.93 -20.79 16 13 C 0.00 0.13 4.44 86.30 0.38 0.51 16 14 N -0.46 -20.61 6.36 -928.37 -5.91 -26.52 16 15 C 0.00 -0.22 6.36 83.57 0.53 0.31 16 16 C 0.22 11.84 1.57 -11.20 -0.02 11.82 16 17 O -0.58 -33.81 13.53 -148.98 -2.02 -35.82 16 18 C -0.56 -30.60 8.69 25.60 0.22 -30.37 16 19 H 0.07 3.53 7.81 -2.91 -0.02 3.51 16 20 C 0.02 1.33 5.39 84.65 0.46 1.79 16 21 N -0.92 -51.14 11.02 21.45 0.24 -50.90 16 22 Si 0.97 41.98 29.54 68.60 2.03 44.01 16 23 H -0.27 -11.49 7.11 99.48 0.71 -10.78 16 24 H -0.28 -11.80 7.11 99.48 0.71 -11.09 16 25 H -0.27 -11.14 7.11 99.48 0.71 -10.43 16 26 C 0.01 0.52 7.12 83.56 0.60 1.11 16 27 C -0.11 -2.84 9.24 22.36 0.21 -2.64 16 28 H 0.07 0.51 7.66 -2.39 -0.02 0.49 16 29 H 0.06 0.50 7.66 -2.39 -0.02 0.49 16 30 H 0.12 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.16 1.78 6.29 -2.91 -0.02 1.76 16 32 H 0.16 2.21 6.29 -2.91 -0.02 2.19 16 33 H 0.10 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.07 1.05 7.65 -2.39 -0.02 1.04 16 35 H 0.07 1.04 7.67 -2.38 -0.02 1.02 16 36 H 0.38 9.75 7.32 -74.06 -0.54 9.21 16 37 H 0.04 1.60 7.56 -2.39 -0.02 1.58 16 38 H 0.09 2.80 8.14 -2.39 -0.02 2.78 16 39 H 0.04 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.06 2.84 7.66 -2.39 -0.02 2.83 16 41 H 0.38 22.65 6.33 -74.05 -0.47 22.18 16 42 H 0.27 14.36 8.31 -92.71 -0.77 13.59 16 43 H 0.08 3.20 7.73 -2.39 -0.02 3.18 16 44 H 0.07 3.24 8.14 -2.38 -0.02 3.22 16 45 H 0.15 3.21 6.40 -2.91 -0.02 3.19 16 Total: -1.00 -69.50 366.92 -4.15 -73.65 By element: Atomic # 1 Polarization: 48.04 SS G_CDS: 0.02 Total: 48.06 kcal Atomic # 6 Polarization: -18.79 SS G_CDS: 5.30 Total: -13.50 kcal Atomic # 7 Polarization: -71.75 SS G_CDS: -5.67 Total: -77.42 kcal Atomic # 8 Polarization: -68.98 SS G_CDS: -5.82 Total: -74.81 kcal Atomic # 14 Polarization: 41.98 SS G_CDS: 2.03 Total: 44.01 kcal Total: -69.50 -4.15 -73.65 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647231829.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.153 kcal (2) G-P(sol) polarization free energy of solvation -69.500 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -122.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.152 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds