Wall clock time and date at job start Tue Mar 31 2020 13:54:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42904 * 1 3 3 C 1.35985 * 116.99420 * 2 1 4 4 C 1.38715 * 120.00414 * 0.02562 * 3 2 1 5 5 C 1.38108 * 120.00390 * 180.02562 * 4 3 2 6 6 C 1.38718 * 119.99822 * 359.97438 * 5 4 3 7 7 O 1.35983 * 119.99967 * 180.02562 * 6 5 4 8 8 C 1.42905 * 117.00027 * 359.97438 * 7 6 5 9 9 C 1.38679 * 120.00098 * 0.02562 * 6 5 4 10 10 C 1.50698 * 119.99906 * 180.02562 * 9 6 5 11 11 H 1.09001 * 109.46982 * 34.99846 * 10 9 6 12 12 O 1.42898 * 109.46844 * 154.99603 * 10 9 6 13 13 C 1.52997 * 109.47076 * 274.99434 * 10 9 6 14 14 N 1.46902 * 109.47200 * 180.02562 * 13 10 9 15 15 C 1.47957 * 110.99872 * 170.00161 * 14 13 10 16 16 C 1.53937 * 86.17920 * 222.41747 * 15 14 13 17 17 O 1.42903 * 113.73709 * 269.36255 * 16 15 14 18 18 C 1.50704 * 113.73281 * 138.07712 * 16 15 14 19 19 H 1.07996 * 120.00019 * 0.02562 * 18 16 15 20 20 C 1.37879 * 119.99820 * 179.97438 * 18 16 15 21 21 N 1.31509 * 120.00101 * 0.02562 * 20 18 16 22 22 Si 1.86802 * 119.99714 * 180.02562 * 20 18 16 23 23 H 1.48494 * 109.47148 * 90.00283 * 22 20 18 24 24 H 1.48499 * 109.46942 * 210.00207 * 22 20 18 25 25 H 1.48503 * 109.46961 * 329.99989 * 22 20 18 26 26 C 1.47959 * 110.99905 * 70.64224 * 14 13 10 27 27 C 1.38148 * 119.99741 * 0.26570 * 9 6 5 28 28 H 1.08997 * 109.47271 * 60.00275 * 1 2 3 29 29 H 1.09000 * 109.46421 * 179.97438 * 1 2 3 30 30 H 1.08992 * 109.47367 * 299.99442 * 1 2 3 31 31 H 1.08009 * 120.00024 * 359.97438 * 4 3 2 32 32 H 1.08005 * 120.00235 * 179.97438 * 5 4 3 33 33 H 1.09000 * 109.46382 * 60.00146 * 8 7 6 34 34 H 1.09000 * 109.46888 * 179.97438 * 8 7 6 35 35 H 1.09001 * 109.47345 * 300.00393 * 8 7 6 36 36 H 0.96698 * 114.00392 * 60.00169 * 12 10 9 37 37 H 1.09007 * 109.47158 * 60.00456 * 13 10 9 38 38 H 1.09001 * 109.47551 * 300.00063 * 13 10 9 39 39 H 1.09000 * 113.75975 * 108.10133 * 15 14 13 40 40 H 1.09001 * 113.86215 * 336.74742 * 15 14 13 41 41 H 0.96696 * 113.99962 * 179.97438 * 17 16 15 42 42 H 0.97008 * 120.00029 * 180.02562 * 21 20 18 43 43 H 1.09004 * 113.75954 * 23.26493 * 26 14 13 44 44 H 1.08999 * 113.75873 * 251.90469 * 26 14 13 45 45 H 1.08001 * 119.99847 * 179.70034 * 27 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2117 0.0000 4 6 1.2908 2.3750 0.0005 5 6 1.9176 3.6056 0.0000 6 6 3.3029 3.6783 -0.0005 7 8 3.9202 4.8900 -0.0005 8 6 3.0801 6.0461 -0.0005 9 6 4.0583 2.5153 -0.0011 10 6 5.5632 2.5944 -0.0011 11 1 5.8819 3.4538 0.5887 12 8 6.1029 1.3997 0.5679 13 6 6.0659 2.7471 -1.4380 14 7 7.5329 2.8236 -1.4381 15 6 8.0685 2.7316 -2.8142 16 6 9.1405 1.7975 -2.2243 17 8 10.3181 2.4778 -1.7858 18 6 9.4396 0.5974 -3.0855 19 1 8.9172 0.4602 -4.0207 20 6 10.3809 -0.3248 -2.6798 21 7 11.0173 -0.1574 -1.5412 22 14 10.7521 -1.8119 -3.7475 23 1 11.8472 -1.4806 -4.6941 24 1 11.1688 -2.9478 -2.8865 25 1 9.5354 -2.1895 -4.5106 26 6 8.1320 1.5146 -1.0963 27 6 3.4312 1.2844 -0.0066 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3632 -1.0277 -0.0005 30 1 -0.3633 0.5137 0.8900 31 1 0.2121 2.3185 0.0005 32 1 1.3293 4.5114 0.0000 33 1 2.4509 6.0378 0.8895 34 1 3.6979 6.9441 -0.0001 35 1 2.4508 6.0380 -0.8905 36 1 5.8595 0.5932 0.0932 37 1 5.6542 3.6584 -1.8720 38 1 5.7472 1.8877 -2.0278 39 1 8.4669 3.6724 -3.1942 40 1 7.3961 2.2398 -3.5172 41 1 10.9939 1.8946 -1.4142 42 1 11.6799 -0.8060 -1.2559 43 1 7.4770 0.6664 -1.2953 44 1 8.5810 1.4830 -0.1035 45 1 4.0195 0.3787 -0.0119 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001647231830.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 13:54:14 Heat of formation + Delta-G solvation = -127.687439 kcal Electronic energy + Delta-G solvation = -28103.304148 eV Core-core repulsion = 24087.246860 eV Total energy + Delta-G solvation = -4016.057288 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.161 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -41.74714 -40.79722 -39.92152 -38.55579 -36.90369 -35.91906 -34.07453 -32.92222 -31.37161 -30.44284 -28.43697 -28.01616 -27.74754 -26.77491 -25.82285 -23.36304 -22.94373 -22.02020 -20.46769 -19.51375 -19.18244 -18.53973 -17.97393 -17.31702 -17.08147 -16.83803 -16.74291 -16.41735 -16.31880 -15.79265 -15.69726 -15.50904 -15.27549 -15.22321 -14.28731 -14.12058 -13.87453 -13.70634 -13.65369 -13.52441 -13.32751 -13.14816 -12.86461 -12.67384 -12.63472 -12.50279 -12.40877 -12.24917 -12.17641 -11.91719 -11.79317 -11.34144 -11.13617 -11.02091 -10.60495 -10.04169 -9.95399 -9.51832 -8.73203 -8.21114 -6.39811 0.13559 0.41080 1.43291 1.44691 1.54963 2.31743 2.38945 2.45105 2.59509 2.98760 3.13030 3.42098 3.60992 3.72477 3.92162 4.04787 4.12781 4.15255 4.22747 4.27498 4.34674 4.40975 4.41933 4.43448 4.48241 4.52907 4.58292 4.68960 4.73324 4.75038 4.77590 4.82571 4.93575 5.17076 5.20209 5.27210 5.29943 5.44483 5.50382 5.56193 5.78337 6.01345 6.32976 6.35709 6.51152 6.65186 6.68203 7.32982 7.57640 8.83347 Molecular weight = 323.16amu Principal moments of inertia in cm(-1) A = 0.014740 B = 0.003383 C = 0.002908 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1899.100572 B = 8274.237181 C = 9627.059567 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.338 6.338 3 C 0.085 3.915 4 C -0.164 4.164 5 C -0.163 4.163 6 C 0.091 3.909 7 O -0.335 6.335 8 C 0.018 3.982 9 C -0.119 4.119 10 C 0.173 3.827 11 H 0.099 0.901 12 O -0.561 6.561 13 C 0.006 3.994 14 N -0.480 5.480 15 C 0.015 3.985 16 C 0.212 3.788 17 O -0.587 6.587 18 C -0.561 4.561 19 H 0.064 0.936 20 C 0.027 3.973 21 N -0.918 5.918 22 Si 0.968 3.032 23 H -0.276 1.276 24 H -0.280 1.280 25 H -0.267 1.267 26 C 0.026 3.974 27 C -0.121 4.121 28 H 0.066 0.934 29 H 0.115 0.885 30 H 0.067 0.933 31 H 0.162 0.838 32 H 0.162 0.838 33 H 0.068 0.932 34 H 0.111 0.889 35 H 0.068 0.932 36 H 0.377 0.623 37 H 0.084 0.916 38 H 0.039 0.961 39 H 0.073 0.927 40 H 0.076 0.924 41 H 0.382 0.618 42 H 0.273 0.727 43 H 0.058 0.942 44 H 0.049 0.951 45 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.904 5.421 3.123 25.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.252 6.252 3 C 0.040 3.960 4 C -0.182 4.182 5 C -0.181 4.181 6 C 0.046 3.954 7 O -0.249 6.249 8 C -0.076 4.076 9 C -0.121 4.121 10 C 0.114 3.886 11 H 0.117 0.883 12 O -0.368 6.368 13 C -0.123 4.123 14 N -0.202 5.202 15 C -0.113 4.113 16 C 0.171 3.829 17 O -0.398 6.398 18 C -0.599 4.599 19 H 0.082 0.918 20 C -0.173 4.173 21 N -0.559 5.559 22 Si 0.793 3.207 23 H -0.201 1.201 24 H -0.205 1.205 25 H -0.191 1.191 26 C -0.104 4.104 27 C -0.140 4.140 28 H 0.085 0.915 29 H 0.133 0.867 30 H 0.085 0.915 31 H 0.179 0.821 32 H 0.180 0.820 33 H 0.087 0.913 34 H 0.129 0.871 35 H 0.087 0.913 36 H 0.227 0.773 37 H 0.103 0.897 38 H 0.057 0.943 39 H 0.092 0.908 40 H 0.094 0.906 41 H 0.236 0.764 42 H 0.083 0.917 43 H 0.076 0.924 44 H 0.067 0.933 45 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -24.450 6.730 3.865 25.652 hybrid contribution -0.117 -2.038 -1.003 2.275 sum -24.567 4.692 2.861 25.175 Atomic orbital electron populations 1.23341 0.76428 1.05513 1.02332 1.86077 1.23478 1.26480 1.89202 1.18900 0.91779 0.85276 1.00027 1.21348 1.01370 0.90796 1.04689 1.21312 0.92228 0.99746 1.04821 1.18784 0.91556 0.85111 0.99943 1.86128 1.37016 1.12828 1.88914 1.23341 0.96278 0.85585 1.02385 1.19634 0.95874 0.91336 1.05212 1.20355 0.86852 0.88129 0.93273 0.88331 1.86675 1.76228 1.16629 1.57252 1.23173 0.90790 1.01477 0.96865 1.68426 1.06088 1.30390 1.15315 1.24095 0.96310 0.99592 0.91352 1.20254 0.82962 0.88946 0.90771 1.86011 1.30145 1.40137 1.83526 1.21911 1.23510 1.07344 1.07142 0.91808 1.25817 0.94772 1.00734 0.95930 1.69441 1.26488 1.38048 1.21913 0.85412 0.78591 0.78252 0.78482 1.20123 1.20486 1.19137 1.24210 0.97105 0.89396 0.99665 1.20036 0.92451 0.97217 1.04258 0.91530 0.86679 0.91486 0.82096 0.82025 0.91336 0.87066 0.91341 0.77336 0.89726 0.94259 0.90823 0.90595 0.76407 0.91677 0.92407 0.93275 0.84844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.81 113.37 1.11 1.32 16 2 O -0.34 -7.29 10.50 -93.38 -0.98 -8.27 16 3 C 0.09 1.97 6.69 22.49 0.15 2.12 16 4 C -0.16 -2.94 9.03 22.35 0.20 -2.74 16 5 C -0.16 -3.02 9.03 22.35 0.20 -2.82 16 6 C 0.09 2.28 6.66 22.49 0.15 2.43 16 7 O -0.33 -8.24 9.63 -93.36 -0.90 -9.14 16 8 C 0.02 0.26 9.81 113.37 1.11 1.37 16 9 C -0.12 -3.41 5.08 -19.78 -0.10 -3.51 16 10 C 0.17 5.87 3.19 29.85 0.10 5.97 16 11 H 0.10 3.67 7.69 -2.39 -0.02 3.65 16 12 O -0.56 -20.30 10.74 -148.98 -1.60 -21.90 16 13 C 0.01 0.21 4.65 86.30 0.40 0.62 16 14 N -0.48 -21.19 6.26 -910.94 -5.71 -26.89 16 15 C 0.02 0.69 7.36 86.41 0.64 1.33 16 16 C 0.21 11.24 1.44 -10.89 -0.02 11.23 16 17 O -0.59 -33.86 13.49 -148.98 -2.01 -35.87 16 18 C -0.56 -30.78 8.62 25.60 0.22 -30.56 16 19 H 0.06 3.40 7.81 -2.91 -0.02 3.38 16 20 C 0.03 1.46 5.39 84.66 0.46 1.92 16 21 N -0.92 -50.97 11.08 21.45 0.24 -50.73 16 22 Si 0.97 42.33 29.54 68.60 2.03 44.36 16 23 H -0.28 -11.88 7.11 99.48 0.71 -11.17 16 24 H -0.28 -11.93 7.11 99.48 0.71 -11.23 16 25 H -0.27 -11.31 7.11 99.48 0.71 -10.60 16 26 C 0.03 1.25 5.36 86.40 0.46 1.71 16 27 C -0.12 -3.26 9.24 22.35 0.21 -3.05 16 28 H 0.07 0.58 7.66 -2.39 -0.02 0.57 16 29 H 0.11 0.90 8.14 -2.39 -0.02 0.89 16 30 H 0.07 0.58 7.66 -2.39 -0.02 0.56 16 31 H 0.16 1.77 6.29 -2.91 -0.02 1.75 16 32 H 0.16 1.90 6.29 -2.91 -0.02 1.88 16 33 H 0.07 0.73 7.66 -2.39 -0.02 0.71 16 34 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.07 0.74 7.66 -2.39 -0.02 0.73 16 36 H 0.38 11.78 6.65 -74.06 -0.49 11.29 16 37 H 0.08 2.89 8.14 -2.38 -0.02 2.87 16 38 H 0.04 1.39 7.69 -2.39 -0.02 1.37 16 39 H 0.07 3.32 8.14 -2.39 -0.02 3.30 16 40 H 0.08 3.20 7.75 -2.39 -0.02 3.18 16 41 H 0.38 22.50 6.42 -74.06 -0.48 22.03 16 42 H 0.27 14.31 8.31 -92.70 -0.77 13.54 16 43 H 0.06 2.72 6.87 -2.38 -0.02 2.70 16 44 H 0.05 2.64 8.08 -2.39 -0.02 2.62 16 45 H 0.13 3.53 6.41 -2.91 -0.02 3.51 16 Total: -1.00 -68.73 363.39 -3.58 -72.30 By element: Atomic # 1 Polarization: 48.73 SS G_CDS: 0.06 Total: 48.80 kcal Atomic # 6 Polarization: -17.96 SS G_CDS: 5.29 Total: -12.67 kcal Atomic # 7 Polarization: -72.16 SS G_CDS: -5.47 Total: -77.62 kcal Atomic # 8 Polarization: -69.68 SS G_CDS: -5.49 Total: -75.17 kcal Atomic # 14 Polarization: 42.33 SS G_CDS: 2.03 Total: 44.36 kcal Total: -68.73 -3.58 -72.30 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647231830.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.383 kcal (2) G-P(sol) polarization free energy of solvation -68.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -124.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.577 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.304 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.687 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds