Wall clock time and date at job start Tue Mar 31 2020 14:20:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86807 * 119.99792 * 2 1 4 4 H 1.48498 * 109.46980 * 180.02562 * 3 2 1 5 5 H 1.48501 * 109.47246 * 300.00389 * 3 2 1 6 6 H 1.48500 * 109.46913 * 59.99846 * 3 2 1 7 7 C 1.37876 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99918 * 180.02562 * 7 2 1 9 9 C 1.50698 * 119.99840 * 359.97438 * 7 2 1 10 10 N 1.46499 * 109.47139 * 180.02562 * 9 7 2 11 11 C 1.46493 * 119.99999 * 270.00257 * 10 9 7 12 12 C 1.52994 * 109.47437 * 86.43404 * 11 10 9 13 13 C 1.53003 * 117.50059 * 243.74970 * 12 11 10 14 14 C 1.52999 * 117.50408 * 175.08584 * 12 11 10 15 15 C 1.34785 * 119.99981 * 89.99871 * 10 9 7 16 16 O 1.21608 * 119.99928 * 355.89987 * 15 10 9 17 17 C 1.47431 * 119.99914 * 175.90453 * 15 10 9 18 18 C 1.41287 * 126.41451 * 28.62863 * 17 15 10 19 19 N 1.30452 * 108.02203 * 179.97438 * 18 17 15 20 20 N 1.39932 * 108.89526 * 359.97438 * 19 18 17 21 21 C 1.46503 * 125.75512 * 180.02562 * 20 19 18 22 22 C 1.52995 * 109.47271 * 304.98700 * 21 20 19 23 23 H 1.09001 * 109.46872 * 304.99220 * 22 21 20 24 24 O 1.42897 * 109.47408 * 64.99278 * 22 21 20 25 25 C 1.52996 * 109.47059 * 184.99730 * 22 21 20 26 26 O 1.42903 * 109.47335 * 174.99394 * 25 22 21 27 27 C 1.34264 * 108.49579 * 359.75607 * 20 19 18 28 28 H 0.96994 * 119.99894 * 359.97438 * 1 2 3 29 29 H 1.09004 * 109.46976 * 300.00311 * 9 7 2 30 30 H 1.08999 * 109.47397 * 60.00053 * 9 7 2 31 31 H 1.09004 * 109.46883 * 206.43443 * 11 10 9 32 32 H 1.08998 * 109.47141 * 326.42891 * 11 10 9 33 33 H 1.09006 * 115.54962 * 29.41968 * 12 11 10 34 34 H 1.08997 * 117.49494 * 359.97438 * 13 12 11 35 35 H 1.08997 * 117.50124 * 145.01962 * 13 12 11 36 36 H 1.08997 * 117.50295 * 214.97943 * 14 12 11 37 37 H 1.09013 * 117.49549 * 0.02562 * 14 12 11 38 38 H 1.07995 * 125.98992 * 359.97438 * 18 17 15 39 39 H 1.09005 * 109.46749 * 64.98488 * 21 20 19 40 40 H 1.08997 * 109.47317 * 184.98268 * 21 20 19 41 41 H 0.96696 * 113.99665 * 60.00186 * 24 22 21 42 42 H 1.09001 * 109.47379 * 294.99697 * 25 22 21 43 43 H 1.09005 * 109.47510 * 54.99824 * 25 22 21 44 44 H 0.96703 * 114.00361 * 179.97438 * 26 25 22 45 45 H 1.07993 * 126.29638 * 180.24129 * 27 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 3.7091 1.3465 -0.0006 5 1 1.8903 2.3966 -1.2124 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 7 2.2032 -3.6126 -0.0005 11 6 2.6792 -4.1693 -1.2692 12 6 3.8887 -3.3685 -1.7557 13 6 3.7451 -2.6013 -3.0717 14 6 4.6061 -3.8656 -3.0123 15 6 2.6411 -4.1248 1.1667 16 8 2.3048 -3.6155 2.2185 17 6 3.5281 -5.3025 1.1684 18 6 4.4397 -5.6673 0.1525 19 7 5.0374 -6.7663 0.5222 20 7 4.5445 -7.1511 1.7740 21 6 4.9625 -8.3330 2.5321 22 6 4.7932 -9.5817 1.6644 23 1 3.7659 -9.6373 1.3043 24 8 5.6853 -9.5122 0.5503 25 6 5.1106 -10.8268 2.4950 26 8 4.8406 -11.9973 1.7210 27 6 3.6282 -6.2515 2.1659 28 1 -0.4850 0.8400 0.0004 29 1 0.6248 -2.5570 0.8897 30 1 0.6242 -2.5567 -0.8903 31 1 2.9674 -5.2104 -1.1237 32 1 1.8835 -4.1130 -2.0120 33 1 4.4987 -2.9165 -0.9736 34 1 2.7891 -2.6675 -3.5910 35 1 4.2609 -1.6448 -3.1555 36 1 5.6879 -3.7403 -3.0572 37 1 4.2161 -4.7631 -3.4928 38 1 4.6116 -5.1304 -0.7687 39 1 6.0090 -8.2292 2.8191 40 1 4.3478 -8.4266 3.4273 41 1 6.6189 -9.4604 0.7967 42 1 6.1624 -10.8146 2.7806 43 1 4.4907 -10.8332 3.3916 44 1 5.0201 -12.8262 2.1857 45 1 3.0700 -6.2686 3.0902 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001647287804.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 14:20:42 Heat of formation + Delta-G solvation = -12.288451 kcal Electronic energy + Delta-G solvation = -27734.843185 eV Core-core repulsion = 23756.082724 eV Total energy + Delta-G solvation = -3978.760461 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 323.168 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -41.28677 -38.90356 -38.33861 -36.97161 -36.25618 -34.23305 -33.53102 -32.40961 -30.38112 -29.96024 -27.86834 -26.22479 -25.91947 -23.29265 -22.51688 -22.02279 -21.26834 -20.78906 -20.41823 -18.82073 -17.93157 -17.27997 -16.84980 -16.43515 -16.27682 -15.85003 -15.45846 -15.17572 -14.79484 -14.47364 -14.28275 -14.10250 -13.84993 -13.66937 -13.34168 -13.11202 -12.71214 -12.64511 -12.37372 -12.05095 -11.73415 -11.42224 -11.30225 -11.15418 -11.07647 -10.85722 -10.79230 -10.67132 -10.56592 -10.40404 -10.20619 -9.87291 -9.59211 -9.47205 -9.27154 -8.90043 -8.40540 -8.31953 -7.55958 -5.94738 -3.96802 1.77958 2.29312 2.57006 3.35226 3.42787 3.44617 3.47087 3.92179 3.97813 4.01085 4.29234 4.38577 4.42611 4.50433 4.54302 4.61283 4.76605 4.86567 4.92861 5.00250 5.18274 5.30777 5.37513 5.40637 5.49297 5.54562 5.67276 5.84517 5.89747 5.93957 6.03120 6.17689 6.34827 6.50126 6.61433 6.72134 6.88482 7.08141 7.18995 7.36559 7.52775 7.66162 7.73541 8.02773 8.34710 8.53778 9.02121 9.22697 9.67027 11.13790 Molecular weight = 323.17amu Principal moments of inertia in cm(-1) A = 0.020247 B = 0.002986 C = 0.002753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1382.586411 B = 9376.152527 C =10167.195690 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.059 3.941 3 Si 0.894 3.106 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.285 1.285 7 C -0.509 4.509 8 H 0.059 0.941 9 C 0.249 3.751 10 N -0.588 5.588 11 C 0.134 3.866 12 C -0.162 4.162 13 C -0.158 4.158 14 C -0.193 4.193 15 C 0.581 3.419 16 O -0.546 6.546 17 C -0.270 4.270 18 C 0.062 3.938 19 N -0.278 5.278 20 N -0.368 5.368 21 C 0.104 3.896 22 C 0.099 3.901 23 H 0.110 0.890 24 O -0.528 6.528 25 C 0.047 3.953 26 O -0.561 6.561 27 C 0.103 3.897 28 H 0.260 0.740 29 H 0.042 0.958 30 H 0.032 0.968 31 H 0.081 0.919 32 H 0.073 0.927 33 H 0.107 0.893 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.092 0.908 38 H 0.203 0.797 39 H 0.091 0.909 40 H 0.107 0.893 41 H 0.371 0.629 42 H 0.053 0.947 43 H 0.057 0.943 44 H 0.381 0.619 45 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.596 -21.571 2.655 24.634 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.142 4.142 3 Si 0.722 3.278 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.548 4.548 8 H 0.077 0.923 9 C 0.130 3.870 10 N -0.318 5.318 11 C 0.009 3.991 12 C -0.181 4.181 13 C -0.195 4.195 14 C -0.231 4.231 15 C 0.368 3.632 16 O -0.425 6.425 17 C -0.285 4.285 18 C -0.125 4.125 19 N -0.097 5.097 20 N -0.149 5.149 21 C -0.019 4.019 22 C 0.038 3.962 23 H 0.127 0.873 24 O -0.332 6.332 25 C -0.033 4.033 26 O -0.366 6.366 27 C -0.045 4.045 28 H 0.070 0.930 29 H 0.060 0.940 30 H 0.049 0.951 31 H 0.099 0.901 32 H 0.092 0.908 33 H 0.125 0.875 34 H 0.113 0.887 35 H 0.109 0.891 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.219 0.781 39 H 0.109 0.891 40 H 0.125 0.875 41 H 0.217 0.783 42 H 0.071 0.929 43 H 0.075 0.925 44 H 0.228 0.772 45 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges 11.404 -21.746 2.191 24.653 hybrid contribution 0.524 1.367 1.090 1.826 sum 11.928 -20.380 3.281 23.841 Atomic orbital electron populations 1.69941 1.05921 1.26620 1.51363 1.24907 0.94803 0.99014 0.95495 0.86508 0.80075 0.83797 0.77425 1.19877 1.21135 1.21087 1.21443 0.93378 0.90395 1.49626 0.92300 1.19285 0.87218 0.82331 0.98179 1.47989 1.44980 1.35081 1.03700 1.21357 0.94791 0.96066 0.86863 1.22801 1.00081 1.03415 0.91815 1.22860 1.01156 0.95210 1.00267 1.23054 0.98564 0.98965 1.02510 1.17215 0.79802 0.81992 0.84195 1.90744 1.58862 1.61704 1.31147 1.20629 1.07942 1.02306 0.97644 1.24881 0.94200 0.93662 0.99796 1.77309 1.22029 1.15479 0.94875 1.48200 1.31232 1.19812 1.15628 1.22308 1.02665 0.83109 0.93789 1.22139 0.96894 0.89693 0.87493 0.87261 1.86782 1.19194 1.96173 1.31012 1.22826 0.99770 0.86796 0.93860 1.86572 1.90413 1.15719 1.43891 1.22859 0.92574 0.89794 0.99314 0.92985 0.94025 0.95054 0.90146 0.90844 0.87479 0.88748 0.89129 0.89149 0.88949 0.78105 0.89106 0.87485 0.78265 0.92924 0.92470 0.77229 0.80075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.89 13.29 55.43 0.74 -26.15 16 2 C 0.06 1.69 5.46 -17.82 -0.10 1.59 16 3 Si 0.89 22.20 29.54 -169.99 -5.02 17.18 16 4 H -0.27 -6.73 7.11 56.52 0.40 -6.33 16 5 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 6 H -0.28 -7.10 7.11 56.52 0.40 -6.70 16 7 C -0.51 -14.39 9.23 -34.44 -0.32 -14.71 16 8 H 0.06 1.68 7.81 -52.49 -0.41 1.27 16 9 C 0.25 6.55 5.17 -5.20 -0.03 6.52 16 10 N -0.59 -12.79 2.46 -176.33 -0.43 -13.22 16 11 C 0.13 2.30 5.22 -4.05 -0.02 2.28 16 12 C -0.16 -2.63 3.96 -90.62 -0.36 -2.99 16 13 C -0.16 -2.43 10.18 -26.69 -0.27 -2.70 16 14 C -0.19 -2.48 9.80 -26.69 -0.26 -2.74 16 15 C 0.58 12.75 7.62 -12.51 -0.10 12.65 16 16 O -0.55 -14.16 16.63 5.27 0.09 -14.07 16 17 C -0.27 -4.70 5.63 -105.07 -0.59 -5.30 16 18 C 0.06 0.97 9.55 -16.98 -0.16 0.81 16 19 N -0.28 -4.07 11.46 30.86 0.35 -3.72 16 20 N -0.37 -4.50 3.65 -60.81 -0.22 -4.72 16 21 C 0.10 0.74 6.16 -4.04 -0.02 0.72 16 22 C 0.10 0.79 3.46 -26.74 -0.09 0.69 16 23 H 0.11 1.12 8.14 -51.93 -0.42 0.69 16 24 O -0.53 -5.48 12.32 -40.08 -0.49 -5.97 16 25 C 0.05 0.24 6.68 37.16 0.25 0.49 16 26 O -0.56 -4.08 13.62 -40.08 -0.55 -4.63 16 27 C 0.10 1.45 11.36 -16.56 -0.19 1.27 16 28 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 29 H 0.04 1.23 7.48 -51.93 -0.39 0.84 16 30 H 0.03 0.84 7.93 -51.93 -0.41 0.42 16 31 H 0.08 1.24 4.67 -51.93 -0.24 1.00 16 32 H 0.07 1.23 7.68 -51.93 -0.40 0.83 16 33 H 0.11 1.96 8.14 -51.93 -0.42 1.53 16 34 H 0.09 1.44 8.03 -51.93 -0.42 1.02 16 35 H 0.09 1.41 8.14 -51.93 -0.42 0.99 16 36 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 37 H 0.09 1.06 8.14 -51.92 -0.42 0.63 16 38 H 0.20 2.96 3.91 -52.49 -0.21 2.75 16 39 H 0.09 0.50 8.14 -51.93 -0.42 0.08 16 40 H 0.11 0.45 8.06 -51.93 -0.42 0.03 16 41 H 0.37 2.52 9.04 45.56 0.41 2.93 16 42 H 0.05 0.17 8.14 -51.93 -0.42 -0.25 16 43 H 0.06 0.18 8.14 -51.93 -0.42 -0.24 16 44 H 0.38 0.92 9.12 45.56 0.42 1.33 16 45 H 0.18 2.11 8.06 -52.49 -0.42 1.68 16 LS Contribution 378.99 15.07 5.71 5.71 Total: -1.00 -38.25 378.99 -7.09 -45.35 By element: Atomic # 1 Polarization: 10.69 SS G_CDS: -5.00 Total: 5.69 kcal Atomic # 6 Polarization: 0.84 SS G_CDS: -2.26 Total: -1.43 kcal Atomic # 7 Polarization: -48.26 SS G_CDS: 0.43 Total: -47.82 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: -0.95 Total: -24.68 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Total LS contribution 5.71 Total: 5.71 kcal Total: -38.25 -7.09 -45.35 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001647287804.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.058 kcal (2) G-P(sol) polarization free energy of solvation -38.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.196 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds